LOCUS       NM_001001111             966 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor family 10 subfamily AL member
            4C (Or10al4c), mRNA.
ACCESSION   NM_001001111
VERSION     NM_001001111.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 966)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 966)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000020.1.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-966               JAXUCZ010000020.1  757706-758671       c
FEATURES             Location/Qualifiers
     source          1..966
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..966
                     /gene="Or10al4c"
                     /gene_synonym="Olr1697"
                     /note="olfactory receptor family 10 subfamily AL member
                     4C"
                     /db_xref="GeneID:406010"
                     /db_xref="RGD:1334404"
     CDS             1..966
                     /gene="Or10al4c"
                     /gene_synonym="Olr1697"
                     /note="olfactory receptor gene Olr1697; olfactory receptor
                     1697"
                     /codon_start=1
                     /product="olfactory receptor Olr1697"
                     /protein_id="NP_001001111.1"
                     /db_xref="GeneID:406010"
                     /db_xref="RGD:1334404"
                     /translation="MSVNCSLWQENSLSVKRFAFTKFSEVPGECFLLFTLILLMFLVS
                     LTGNALIALAIYTSPSLHTPMYFFLANLSLLEIGYTCSVIPKMLQSLVSEAREISQVG
                     CATQMFFFIFFGITECCLLAAMAFDRYMAICSPLHYATRMSREVCAHLAIVSWVMGCI
                     VGLGQTNFIFSLNFCGPCEIDHFFCDLPPLLALACGDTSQIEASTFVVVVLCISSPFL
                     LIIYSYVRILVAVLVMPSPEGRHKALSTCSSHLLVVTLFYGSGSVTYLRPKSSHSPGT
                     DKLLALFYTAVTSMLNPIIYSLRNKEVKAALKRTLGLEKILSINT"
     exon            1..966
                     /gene="Or10al4c"
                     /gene_synonym="Olr1697"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgagtgtca actgttcgct gtggcaggag aatagtttgt ctgtcaaacg ctttgcattt
       61 accaagttct ctgaggtccc tggagaatgc ttcctcctgt tcaccctcat ccttctcatg
      121 ttcttagtat cactaacagg aaatgctctc atagcccttg ctatttatac cagtccatct
      181 ctacacaccc ccatgtactt ctttctggcc aacttgtctc tcctggagat tggctatact
      241 tgctctgtca tacccaagat gctgcagagt cttgtgagtg aggcccgaga gatctctcag
      301 gtgggatgtg ccacacagat gtttttcttc atattctttg gtataactga gtgctgccta
      361 ttggcagcca tggcctttga ccgctatatg gctatatgtt ccccactcca ctatgcaacc
      421 cgaatgagtc gtgaggtatg tgcccacttg gcaattgttt catgggtgat gggatgcata
      481 gtaggtctgg gacagaccaa ttttattttc tccttgaact tctgtggacc ctgtgagata
      541 gaccacttct tctgtgacct tccacctctc ctggcacttg cctgtggtga tacatcccaa
      601 attgaggctt ccacctttgt ggtagttgtc ctctgcatat ctagcccttt tttgctgatc
      661 atttattcct atgtcagaat tctcgttgca gtgctggtga tgccttcacc tgaggggcgc
      721 cacaaagccc tttcaacctg ttcctcccac ctacttgtag tcacactttt ttatggttca
      781 ggatctgtta cctatttgag gcctaagtct agccactcac caggaacgga caaactcttg
      841 gccctcttct acacagcagt gacatccatg ctgaacccta tcatctatag tttaaggaat
      901 aaggaagtca aggcagcact gaaaagaact ctgggcctgg aaaaaattct gtcaataaat
      961 acgtaa
//
