LOCUS       XM_039095347            3918 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus optineurin (Optn), transcript variant
            X9, mRNA.
ACCESSION   XM_039095347
VERSION     XM_039095347.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051352.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3918
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3918
                     /gene="Optn"
                     /gene_synonym="Fip2"
                     /note="optineurin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 55 ESTs, 3 long SRA
                     reads, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 59 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:246294"
                     /db_xref="RGD:628886"
     CDS             384..1787
                     /gene="Optn"
                     /gene_synonym="Fip2"
                     /codon_start=1
                     /product="optineurin isoform X9"
                     /protein_id="XP_038951275.1"
                     /db_xref="GeneID:246294"
                     /db_xref="RGD:628886"
                     /translation="MTEGEAEGAMKEMRNSAGPTRTDSISMGKCTEDARTCVEFEELT
                     VSQLLLCLREGNQKVERLEIALREAKERISDFEKKANGHSAIETQTEGSTQKEEEDKD
                     PESVGIEVETLNVQVASLFKELQEAHTKLSEAELMKKRLQEKCQALERKNSATPSELN
                     EKQELVYSNRKLELQVESMRSEIKMEQAKTEEEKSRLATLQATHDKLLQEHNKALRTI
                     EELTKQQAEKVDKVQLQELSEKLELAEQALASKQLQMDEMKQTIAKQEEDLETMAVLR
                     AQMEVYCSDFHAERAAREKIHEEKEQLALQLAILLKENNDFEDGGRCGRLPQSVYGDH
                     RTGVSSLPQSVYGDHRTGVSSLPQSVYGDHRTGVSSLPHSVYGDHRTGVSSLPHSVYG
                     DHRTGRQSLMEMQCRHGARTSDSDQQAYLFQRGAEDMSWQHGQQPRSIPIHSCPKCGE
                     VLPDIDTLQIHVMDCII"
ORIGIN      
        1 gagcgggcgc tgcggtcagc tgagcggcgc ctggcgggtc gcgaggccgc gcgtcaccgt
       61 ccagctgccc ggtcgccgcc ccctggccgg tccctggcgg gcgtcggcat ccagagcttt
      121 gggacaagat gccaacgaag cagtgacctg agaggagcgg atctctgtgg ccggacatca
      181 caggtagatg cgggtttccc agaaccgact tggagcagga agtggagcaa ctgaagaggc
      241 aggtggagca ggaagtggag catctgaaga accaggtgag gcgccttcag gctgagaaag
      301 cggacctgct gggcatcgtc tcagaactgc agctcaagct caactccagc ggctcctcag
      361 aagactcctt cgtggagatc aggatgactg aaggagaggc ggaaggggca atgaaggaga
      421 tgaggaacag cgctggaccc acaaggacag actccatcag catgggcaaa tgtacagagg
      481 acgccaggac ttgtgtggag tttgaggaac tgactgtgag ccaactcctg ctttgcctca
      541 gggaaggaaa ccaaaaggtg gagagactcg agatcgcgct cagagaagcc aaagaaagaa
      601 tttcagattt tgaaaagaaa gcaaacggcc attctgcgat tgagacccag acagagggga
      661 gcacacaaaa agaagaggag gacaaagacc cagagagtgt gggaatcgaa gtggaaactc
      721 tgaatgttca agtggcctct ctgtttaagg agcttcaaga ggcgcacaca aagctcagtg
      781 aggccgagct gatgaagaag agacttcaag aaaagtgtca ggctctggaa aggaagaact
      841 ctgcaacccc atcggagctg aatgaaaagc aagagctcgt ttacagtaac aggaagttag
      901 agctgcaggt ggagagcatg cgctcggaaa tcaagatgga gcaggccaag acagaggagg
      961 agaaatccag gttagccact cttcaggcaa cacacgacaa gcttcttcag gaacacaata
     1021 aagctctgag aacaattgaa gaactaacca aacaacaggc agaaaaagtg gacaaggtgc
     1081 agctgcagga gctcagcgag aagctggagc tggcggagca ggctctggcg tccaagcagc
     1141 tccagatgga tgagatgaag cagaccatcg ccaagcagga ggaggacctg gagaccatgg
     1201 ccgtcctcag ggctcagatg gaggtgtact gttcagattt ccatgctgag agggcagcaa
     1261 gggagaagat ccatgaggaa aaggagcagc tggccttgca gctcgccatt ttgctgaaag
     1321 agaacaatga ctttgaagat ggaggcaggt gtggacgctt gccacaatct gtgtacggag
     1381 atcacaggac aggagtcagt tccctgccac agtctgtgta cggagatcac aggacaggag
     1441 tcagttccct gccacagtct gtgtatggag atcacaggac aggagtcagt tccctgccac
     1501 actctgtgta tggagatcac aggacaggag tcagttccct gccacactct gtgtatggag
     1561 atcacaggac aggtaggcag tccttgatgg aaatgcagtg ccggcatggg gcgagaacca
     1621 gcgactctga ccagcaggct tacctgtttc aaagaggagc cgaggacatg agctggcagc
     1681 atgggcagca gccccggagt attcccattc actcgtgccc caagtgtggg gaggtcctgc
     1741 cggacattga cacgcttcag atacatgtga tggactgtat catctgaggg ccctccactc
     1801 cccaaagctg ttggtaaacg ccagatttct gctccaacac ttgtacttct gtcttctttg
     1861 ttgtcacgca aatatttttg ccacattatc ctaatctctg gagaaaggaa gtgtacccct
     1921 cctaaggaga gcatcttctg gactgacagg aagtcacaac gaagaatcta attagtgccc
     1981 ttccagtaag atagccagtg tttttatgtt ctgctcatga gagtctctga gagcagtcag
     2041 ccagaatggg acaccaagtg accaagctca cgaatgacat gggagaaatt cactgacatg
     2101 tggttgagaa cctgtgagag acaggaaatt gaaatggtcg ggaatcatga ctgcagtgtt
     2161 tttctaggta aatcttcacc tagcaggatc ttgttgttct gtgtgtaatt atgtggaaat
     2221 tacgtgtggt tctttctgac tgaacacggt ggtatctgtt gatcccggga caggtgagaa
     2281 tggggaatgc agctcaggcc cagggtactt ccctaagctg ttcagtgtgg cgttaccgtc
     2341 agcctctctg tgtactggag gtgtacaggg tttattttta aaagaacagc tattttcttt
     2401 gcaggtgagg tagcagctta cagatctcag ttattacaaa gtaaactttt gtgacatatc
     2461 tgtcccactg ctcatatgtg accagcaaca ctgtaatgtg tctattctgc attgagctca
     2521 ctagacttga tttggtcatg agaagtagga gcagatcctt ttaaaggagg gccagtgcat
     2581 gtctgaatag attcccgata aaaaagtaca gagagccaag catgctggtg cagggcacac
     2641 ccgcatggga gaccgaggca gcagatcccc cagctcatga ccagacacgt ctacacataa
     2701 taaatgggga tttgccatat tttgtgttaa aaatgttagc aagaactaaa caaatccaaa
     2761 agtaaacagc attgagtcct aaaacatttg agaagtcttg tgtttagcac aggacctctg
     2821 gttaaataca cacagacgtg tatgtaaaca aaatcagaat agttcattca tctcaaagga
     2881 acatagtgtt cagataagtt atcttcacct gaacagttac ccctccaaga cagtagaaca
     2941 ctgcactgtg catcagtcat tagatcccct cagaccctag aagccattag attagattcc
     3001 tcctcagacc ctaggagcca ttagattaga cccccctcag accctaggag ccattagatt
     3061 agatcccctc agaccctagg agccattaga ttagatcccc tcagacccta ggagccatta
     3121 gattagatcc cctcagaccc taggagccat tagattagat ccccctcaga ccctagggac
     3181 aatattcgat agtgacattt ctaaaattac atttttcctt ttcttattct ttctagtata
     3241 aatttcttta tattttatac tggataaagt aggtttctat agtaccccag acacaggagg
     3301 aaaccagttt cacaatgaag ttactgggga aatccttttt actttgttca agtataatta
     3361 tctgataaat ctaaactgtg aattgaaaac ccaaatggtc ttagtaatgc tatgaccaaa
     3421 gcatttgttt gatcatgaag aagattacag atgaaggcat gttcagacta agattgttgg
     3481 agagagatca gtgtacagca tcttccacag cagctaggat acagggcagc ctaggcatcc
     3541 attgctggag tttggatagg gaaaacacag tacacagata aagtgaaaca gtatccagcc
     3601 ttgggaaaga aggggattct atcacttgat aacatagatg gacctggaga ggacatcatg
     3661 tcaagtgaag taagccaggc acgaatatca catgatgtca cttacatgtg gaccctgaag
     3721 aaacatagtt catagatatt gagagctgaa tagtggtttg caggacagga gggaaggtgt
     3781 gggaagggtg agatgttgct caaaggtacg aagtctcagg agggataaac tgtagtgatc
     3841 tactgtacag aagagtgact gtaataattt gtatattaag gctatatccc cagtttagta
     3901 aacaacttgt aaaccctc
//
