LOCUS       NM_001389270            1837 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus opsin 5 (Opn5), mRNA.
ACCESSION   NM_001389270
VERSION     NM_001389270.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1837)
  AUTHORS   Yamashita,T., Ono,K., Ohuchi,H., Yumoto,A., Gotoh,H., Tomonari,S.,
            Sakai,K., Fujita,H., Imamoto,Y., Noji,S., Nakamura,K. and
            Shichida,Y.
  TITLE     Evolution of mammalian Opn5 as a specialized UV-absorbing pigment
            by a single amino acid mutation
  JOURNAL   J Biol Chem 289 (7), 3991-4000 (2014)
   PUBMED   24403072
REFERENCE   2  (bases 1 to 1837)
  AUTHORS   Kojima,D., Mori,S., Torii,M., Wada,A., Morishita,R. and Fukada,Y.
  TITLE     UV-sensitive photoreceptor protein OPN5 in humans and mice
  JOURNAL   PLoS One 6 (10), e26388 (2011)
   PUBMED   22043319
REFERENCE   3  (bases 1 to 1837)
  AUTHORS   Nieto,P.S., Valdez,D.J., Acosta-Rodriguez,V.A. and Guido,M.E.
  TITLE     Expression of novel opsins and intrinsic light responses in the
            mammalian retinal ganglion cell line RGC-5. Presence of OPN5 in the
            rat retina
  JOURNAL   PLoS One 6 (10), e26417 (2011)
   PUBMED   22022612
  REMARK    GeneRIF: The presence of Opn5 in the ganglion cell layer of the rat
            retina suggests the existence of a novel type of photoreceptor
            cell.
REFERENCE   4  (bases 1 to 1837)
  AUTHORS   Fredriksson,R., Hoglund,P.J., Gloriam,D.E., Lagerstrom,M.C. and
            Schioth,H.B.
  TITLE     Seven evolutionarily conserved human rhodopsin G protein-coupled
            receptors lacking close relatives
  JOURNAL   FEBS Lett 554 (3), 381-388 (2003)
   PUBMED   14623098
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000009.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1780381.1 [ECO:0000332]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-153               JAXUCZ010000009.1  25865610-25865762
            154-273             JAXUCZ010000009.1  25869732-25869851
            274-444             JAXUCZ010000009.1  25879323-25879493
            445-779             JAXUCZ010000009.1  25882995-25883329
            780-1021            JAXUCZ010000009.1  25893004-25893245
            1022-1079           JAXUCZ010000009.1  25896551-25896608
            1080-1837           JAXUCZ010000009.1  25912558-25913315
FEATURES             Location/Qualifiers
     source          1..1837
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q13"
     gene            1..1837
                     /gene="Opn5"
                     /gene_synonym="Gpr136"
                     /note="opsin 5"
                     /db_xref="GeneID:316259"
                     /db_xref="RGD:727869"
     exon            1..153
                     /gene="Opn5"
                     /gene_synonym="Gpr136"
                     /inference="alignment:Splign:2.1.0"
     CDS             24..1157
                     /gene="Opn5"
                     /gene_synonym="Gpr136"
                     /note="G protein-coupled receptor 136"
                     /codon_start=1
                     /product="opsin-5"
                     /protein_id="NP_001376199.1"
                     /db_xref="GeneID:316259"
                     /db_xref="RGD:727869"
                     /translation="MALNHTALPQDERLPHYLRDEDPFASKLSWEADLVAGFYLTIIG
                     ILSTFGNGYVLYMSSRRKKKLRPAEIMTINLAVCDLGISVVGKPFTIISCFCHRWVFG
                     WFGCRWYGWAGFFFGCGSLITMTAVSLDRYLKICYLSYGVWLKRKHAYICLAVIWAYA
                     SFWTTMPLVGLGDYAPEPFGTSCTLDWWLAQASGGGQVFILSILFFCLLLPTAVIVFS
                     YAKIIAKVKSSSKEVAHFDSRIHSSHVLEVKLTKVAMLICAGFLIAWIPYAVVSVWSA
                     FGRPNSIPIQLSVVPTLLAKSAAMYNPIIYQVIDYRFACCQTGGLRATKKKSLEDFRL
                     HTVTAVRKSSAVVEIHQESSSRFTSAHVMDGESHRNDGDCGKK"
     exon            154..273
                     /gene="Opn5"
                     /gene_synonym="Gpr136"
                     /inference="alignment:Splign:2.1.0"
     exon            274..444
                     /gene="Opn5"
                     /gene_synonym="Gpr136"
                     /inference="alignment:Splign:2.1.0"
     exon            445..779
                     /gene="Opn5"
                     /gene_synonym="Gpr136"
                     /inference="alignment:Splign:2.1.0"
     exon            780..1021
                     /gene="Opn5"
                     /gene_synonym="Gpr136"
                     /inference="alignment:Splign:2.1.0"
     exon            1022..1079
                     /gene="Opn5"
                     /gene_synonym="Gpr136"
                     /inference="alignment:Splign:2.1.0"
     exon            1080..1837
                     /gene="Opn5"
                     /gene_synonym="Gpr136"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acccttgggg gtgtgaggac agcatggcct tgaaccacac tgccctgcct caggatgagc
       61 gcctgcccca ctatcttcga gacgaggacc cctttgcttc caaactttcc tgggaagcgg
      121 atttggtggc tggcttttac ctaacaataa tcgggattct ctccacattt ggaaatgggt
      181 atgtccttta tatgtcttct agacgcaaga agaagctgag acctgcggaa ataatgacta
      241 ttaatttagc agtctgtgat ctggggattt cagttgtagg caagccattc accatcatct
      301 cttgcttctg ccaccgctgg gtgtttggct ggtttggctg ccgctggtat ggatgggctg
      361 gatttttctt tggctgtgga agcctgatta ccatgactgc tgtcagcctg gaccgctatc
      421 tgaagatctg ttatctgtct tatggggtct ggctgaagag aaagcatgcc tacatctgcc
      481 tggcagtcat ctgggcttat gcttccttct ggaccaccat gcccttggtg ggcctggggg
      541 actatgcacc tgagcccttc ggaacctcgt gcaccctgga ctggtggctg gcccaggctt
      601 cgggtggggg tcaggtattc atcctgagca tcctcttctt ctgcctcctg ctgccaacgg
      661 ctgtgattgt tttctcatac gcgaagatca ttgccaaggt gaaatcttct tctaaagagg
      721 tagcacattt cgacagtcgg attcatagca gccatgtgct cgaggtgaag ctgaccaagg
      781 tggcgatgct gatttgtgct ggtttcctca ttgcctggat tccttacgcg gtagtctccg
      841 tgtggtcagc ttttggaagg ccgaactcca tccctataca gctctccgtg gtgcccacgc
      901 tcctcgcaaa atctgcagcg atgtacaacc caatcatcta ccaggtcatt gattacagat
      961 ttgcctgttg ccagactggt ggtttgagag caacaaagaa gaagtctttg gaagacttta
     1021 ggctgcacac tgtaaccgca gtcaggaagt cttctgctgt ggtggagatc catcaagaga
     1081 gcagttccag atttactagt gcccatgtta tggatggaga gagtcaccgt aatgacggtg
     1141 actgtggcaa gaaataagca tctgtgttct gaggccgaga aaccccgcag ctgtccatca
     1201 gggcttcaga aataagtggc cagcttcaat atactctttg aaatgctgaa aaaaaagcta
     1261 tagtgtattc tttgcatttg ttttaagttt gagaaactat atggtcagcg ttgactgcgg
     1321 tgacgatatt gaagtttaat catgagtgca tagcatgtga agtgtccact ctttaggctt
     1381 tatagatgat gaaaatggtc taagaagaaa agcacatcct aagcttggga agtgcatcat
     1441 tcctcaagct ttctattcat tgtgatagta atggagcttg ctaatgcatt gatgactgtg
     1501 aacatgcctt tgaaaccgtc aacctcttct tgtccatggt tagaatgttg aacatttatc
     1561 tgggaagctt ctaacagcat actctgtcaa gtcaacctgt acatagtatt tgtaagtact
     1621 ctctatgaga acattcagaa gatgttttag tgtttgactc atttgtttcg tcccagttgt
     1681 gtgtcggact gaagaagttt gttgaccgta ccaggaaagg atggattact acttttcatc
     1741 tctgtccgtc tctctttgcc acactgaaat aattttcttt tgaagccata gctgctgttc
     1801 aagtactttt ttttaaataa agaaaatata ttgcacc
//
