LOCUS       NM_001191933            1751 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus opsin 3 (Opn3), mRNA.
ACCESSION   NM_001191933 XM_573517
VERSION     NM_001191933.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1751)
  AUTHORS   Barez-Lopez,S., Bishop,P., Searby,D., Murphy,D. and Greenwood,M.P.
  TITLE     Male rat hypothalamic extraretinal photoreceptor Opsin3 is
            sensitive to osmotic stimuli and light
  JOURNAL   J Neuroendocrinol 36 (2), e13363 (2024)
   PUBMED   38192267
  REMARK    GeneRIF: Male rat hypothalamic extraretinal photoreceptor Opsin3 is
            sensitive to osmotic stimuli and light.
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Jul 17, 2010 this sequence version replaced XM_573517.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582419.1841282.1,
                                           SRR26360181.2224283.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-452               JAXUCZ010000013.1  90151625-90152076   c
            453-772             JAXUCZ010000013.1  90124370-90124689   c
            773-1024            JAXUCZ010000013.1  90122706-90122957   c
            1025-1751           JAXUCZ010000013.1  90121560-90122286   c
FEATURES             Location/Qualifiers
     source          1..1751
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q24"
     gene            1..1751
                     /gene="Opn3"
                     /note="opsin 3"
                     /db_xref="GeneID:498289"
                     /db_xref="RGD:1594385"
     exon            1..452
                     /gene="Opn3"
                     /inference="alignment:Splign:2.1.0"
     CDS             86..1288
                     /gene="Opn3"
                     /codon_start=1
                     /product="opsin-3"
                     /protein_id="NP_001178862.1"
                     /db_xref="GeneID:498289"
                     /db_xref="RGD:1594385"
                     /translation="MYSGNRSGGQGYWEDGAGAEGAAPAGTRSPAPLFSPTAYERLAL
                     LLGCLALLGVGGNLLVLLLYSKFPRLRTPTHLFLVNLSLGDLLVSLFGVTFTFASCLR
                     NGWVWDAVGCAWDGFSGSLFGFVSITTLTVLAYERYIRVVHARVINFSWAWRAITYIW
                     LYSLAWAGAPLLGWNRYILDVHGLGCTVDWKSKDANDSSFVLFLFLGCLVVPMGIIAH
                     CYGHILYSVRMLRCVEDLQTIQVIKMLRYEKKVAKMCFLMAFVFLTCWMPYVVTRFLV
                     VNGYGHLVTPTVSIVSYLFAKSSTVYNPVIYIFMIRKFRRSLLQLLCFRLLRCQRPAK
                     NLPAAESEMQIRPIVMSQKDGDRPKKKVTFNSSSIIFIITSDESLSVEDSDRSSASKV
                     DVIQVRPL"
     exon            453..772
                     /gene="Opn3"
                     /inference="alignment:Splign:2.1.0"
     exon            773..1024
                     /gene="Opn3"
                     /inference="alignment:Splign:2.1.0"
     exon            1025..1751
                     /gene="Opn3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgagcgtgag ctccacccgg ttcgctgcgt ggcgggcagc cgggcgcacg gagccctctc
       61 cctcacggcg cgtcggcgtc gggccatgta ctcggggaac cgtagcggcg gccagggcta
      121 ctgggaggac ggggcgggcg ccgagggcgc agcaccggcc ggcacgcgga gccccgcgcc
      181 tctcttcagc cccaccgcgt acgagcgcct ggcgctgctg ctcggttgcc tcgcgctgct
      241 gggcgtcggc ggcaacctgc tggtgctgct tctctactcc aagttcccgc gactgcgcac
      301 gcccacccac ctcttcctgg tcaacctcag tctgggcgat ctgctggtat ccctgttcgg
      361 agtcaccttc accttcgcgt cgtgcctgcg gaacggctgg gtgtgggacg ccgtgggctg
      421 cgcgtgggac gggtttagcg gcagcctctt tgggtttgtt tccattacca ccctcactgt
      481 gctggcttat gaacgttata tccgtgtggt acatgccaga gtgatcaatt tttcctgggc
      541 ctggagggcc attacctata tctggctcta ctctttggca tgggcaggag cgcctctcct
      601 gggctggaac aggtacatcc tcgatgtaca tggactgggc tgtactgtgg actggaaatc
      661 caaggatgcc aacgactcct cctttgtgct cttcctgttt cttggctgtc tggtggtgcc
      721 catgggcatc atagcccatt gctacggtca tattctgtat tctgttcgaa tgcttcgctg
      781 tgttgaagat cttcagacaa ttcaagtgat caagatgttg cgatacgaaa agaaagttgc
      841 caagatgtgc tttttgatgg cctttgtctt tctcacctgc tggatgcctt atgttgtaac
      901 ccgcttcttg gtggtcaatg gctatggaca cctggtcacc ccaactgtgt ctatcgtttc
      961 ttatctcttt gctaaatcga gcactgtgta caacccagtt atctacatct tcatgatcag
     1021 aaagtttcgg aggtcccttc tgcaactcct ctgtttccgc ctgctgagat gccagaggcc
     1081 tgctaaaaac ctcccagcag ctgagagtga aatgcagatc aggcccattg tgatgtcaca
     1141 gaaagatggg gacaggccaa agaagaaagt gacatttaac tcttcctcca tcatcttcat
     1201 catcaccagt gatgagtccc tgtcagtcga ggacagcgac agaagcagcg catctaaggt
     1261 cgatgtaatc caagtgcgtc ctttatgaga acggaagaca gtcttacctc agctgcgaca
     1321 cagtggccct gtcaggagtg ccccccagag ttcccatttg gtataacagt gacagaatct
     1381 ctgtggccct gcagggaatc cgaatggccc atgcgctgtc tgtcttcaag aagtgacgga
     1441 gcaagacaaa ttactttaac tcaatgggtg ctttttaact tgagaaactc ctggtggcac
     1501 aagatgagcg tctggcacca ccgtctccta tgccaggatt taatatttga acgactgtat
     1561 ttgccaaagc acataataca ttttgtctat caaatgtgtc ccactataaa actaactgtc
     1621 tcacatacac gtgtacaatg actggacatc tggagtatgt tgcagtattg ggtcctattt
     1681 tgtgccatgt tgtgtgtttg accaattcaa tctactgaga taataaatca acccccactt
     1741 ttatctgaaa a
//
