LOCUS       NM_031015               1634 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus opsin 1, short wave sensitive (Opn1sw), mRNA.
ACCESSION   NM_031015
VERSION     NM_031015.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1634)
  AUTHORS   Ahmedli,N.B., Gribanova,Y., Njoku,C.C., Naidu,A., Young,A.,
            Mendoza,E., Yamashita,C.K., Ozgul,R.K., Johnson,J.E., Fox,D.A. and
            Farber,D.B.
  TITLE     Dynamics of the rhomboid-like protein RHBDD2 expression in mouse
            retina and involvement of its human ortholog in retinitis
            pigmentosa
  JOURNAL   J Biol Chem 288 (14), 9742-9754 (2013)
   PUBMED   23386608
REFERENCE   2  (bases 1 to 1634)
  AUTHORS   Sun,X., Haley,J., Bulgakov,O.V., Cai,X., McGinnis,J. and Li,T.
  TITLE     Tubby is required for trafficking G protein-coupled receptors to
            neuronal cilia
  JOURNAL   Cilia 1 (1), 21 (2012)
   PUBMED   23351594
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1634)
  AUTHORS   Sun,H.
  TITLE     Membrane receptors and transporters involved in the function and
            transport of vitamin A and its derivatives
  JOURNAL   Biochim Biophys Acta 1821 (1), 99-112 (2012)
   PUBMED   21704730
  REMARK    Review article
REFERENCE   4  (bases 1 to 1634)
  AUTHORS   Hagstrom,S.A., Watson,R.F., Pauer,G.J. and Grossman,G.H.
  TITLE     Tulp1 is involved in specific photoreceptor protein transport
            pathways
  JOURNAL   Adv Exp Med Biol 723, 783-789 (2012)
   PUBMED   22183407
REFERENCE   5  (bases 1 to 1634)
  AUTHORS   Li,Y., Tao,W., Luo,L., Huang,D., Kauper,K., Stabila,P.,
            Lavail,M.M., Laties,A.M. and Wen,R.
  TITLE     CNTF induces regeneration of cone outer segments in a rat model of
            retinal degeneration
  JOURNAL   PLoS One 5 (3), e9495 (2010)
   PUBMED   20209167
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 1634)
  AUTHORS   Katti,C., Dalal,J.S., Dose,A.C., Burnside,B. and Battelle,B.A.
  TITLE     Cloning and distribution of myosin 3B in the mouse retina:
            differential distribution in cone outer segments
  JOURNAL   Exp Eye Res 89 (2), 224-237 (2009)
   PUBMED   19332056
REFERENCE   7  (bases 1 to 1634)
  AUTHORS   Zhao,Y., Hong,D.H., Pawlyk,B., Yue,G., Adamian,M., Grynberg,M.,
            Godzik,A. and Li,T.
  TITLE     The retinitis pigmentosa GTPase regulator (RPGR)- interacting
            protein: subserving RPGR function and participating in disk
            morphogenesis
  JOURNAL   Proc Natl Acad Sci U S A 100 (7), 3965-3970 (2003)
   PUBMED   12651948
REFERENCE   8  (bases 1 to 1634)
  AUTHORS   Hirano,A.A., Hack,I., Wassle,H. and Duvoisin,R.M.
  TITLE     Cloning and immunocytochemical localization of a cyclic
            nucleotide-gated channel alpha-subunit to all cone photoreceptors
            in the mouse retina
  JOURNAL   J Comp Neurol 421 (1), 80-94 (2000)
   PUBMED   10813773
REFERENCE   9  (bases 1 to 1634)
  AUTHORS   Hong,D.H., Pawlyk,B.S., Shang,J., Sandberg,M.A., Berson,E.L. and
            Li,T.
  TITLE     A retinitis pigmentosa GTPase regulator (RPGR)-deficient mouse
            model for X-linked retinitis pigmentosa (RP3)
  JOURNAL   Proc Natl Acad Sci U S A 97 (7), 3649-3654 (2000)
   PUBMED   10725384
REFERENCE   10 (bases 1 to 1634)
  AUTHORS   Zhao,X., Haeseleer,F., Fariss,R.N., Huang,J., Baehr,W., Milam,A.H.
            and Palczewski,K.
  TITLE     Molecular cloning and localization of rhodopsin kinase in the
            mammalian pineal
  JOURNAL   Vis Neurosci 14 (2), 225-232 (1997)
   PUBMED   9147475
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Nov 30, 2020 this sequence version replaced NM_031015.1.
            
            Sequence Note: This sequence has been modified as follows: removed
            29 bp suspected to be vector contamination from the 3' end.
            
            ##Evidence-Data-START##
            Transcript exon combination :: U63972.1, AF051163.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760393,
                                           SAMN06680440 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-384               JAXUCZ010000004.1  58945442-58945825   c
            385-553             JAXUCZ010000004.1  58945102-58945270   c
            554-719             JAXUCZ010000004.1  58944686-58944851   c
            720-959             JAXUCZ010000004.1  58944069-58944308   c
            960-1634            JAXUCZ010000004.1  58942685-58943359   c
FEATURES             Location/Qualifiers
     source          1..1634
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q22"
     gene            1..1634
                     /gene="Opn1sw"
                     /note="opsin 1, short wave sensitive"
                     /db_xref="GeneID:81644"
                     /db_xref="RGD:621033"
     exon            1..384
                     /gene="Opn1sw"
                     /inference="alignment:Splign:2.1.0"
     CDS             39..1079
                     /gene="Opn1sw"
                     /note="blue-sensitive opsin; BOP; s opsin; blue cone
                     photoreceptor pigment; short wavelength-sensitive cone
                     opsin; blue cone opsin-like pigment; opsin 1 (cone
                     pigments), short-wave-sensitive (color blindness, tritan)"
                     /codon_start=1
                     /product="short-wave-sensitive opsin 1"
                     /protein_id="NP_112277.2"
                     /db_xref="GeneID:81644"
                     /db_xref="RGD:621033"
                     /translation="MSGEDEFYLFQNISSVGPWDGPQYHIAPVWAFHLQAAFMGFVFF
                     AGTPLNATVLVATLHYKKLRQPLNYILVNVSLGGFLFCIFSVFTVFIASCHGYFLFGR
                     HVCALEAFLGSVAGLVTGWSLAFLAFERYLVICKPFGNIRFNSKHALTVVLITWTIGI
                     GVSIPPFFGWSRFIPEGLQCSCGPDWYTVGTKYRSEHYTWFLFIFCFIIPLSLICFSY
                     FQLLRTLRAVAAQQQESATTQKAEREVSHMVVVMVGSFCLCYVPYAALAMYMVNNRNH
                     GLDLRLVTIPAFFSKSSCVYNPIIYCFMNKQFRACILEMVCRKPMTDESDMSGSQKTE
                     VSTVSSSKVGPH"
     exon            385..553
                     /gene="Opn1sw"
                     /inference="alignment:Splign:2.1.0"
     exon            554..719
                     /gene="Opn1sw"
                     /inference="alignment:Splign:2.1.0"
     exon            720..959
                     /gene="Opn1sw"
                     /inference="alignment:Splign:2.1.0"
     exon            960..1634
                     /gene="Opn1sw"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagaccagag gtggtggtga ggccatccca agcgcaagat gtcgggagag gacgagtttt
       61 acctgtttca gaatatctcc tcagtggggc cctgggatgg gcctcagtac cacattgctc
      121 ccgtctgggc cttccacctc caggcagcct tcatgggatt tgtcttcttt gcagggaccc
      181 cactcaatgc cacagtgttg gtggccacac tgcactacaa aaagttgcgg cagcccctca
      241 actacattct ggtcaatgta tccctcggag gcttcctctt ctgcatcttc tctgtcttca
      301 cagtcttcat cgccagctgt catggatact tcctctttgg tcgccacgtt tgtgctctgg
      361 aggccttctt gggctctgta gcaggtctag tgacaggatg gtccttggct ttcctggcct
      421 ttgagcgcta ccttgtcatc tgtaaaccct ttggcaacat ccgcttcaac tccaagcacg
      481 cactgacggt ggttctgatt acttggacca ttggcatcgg ggtgtccatc ccgcccttct
      541 ttggctggag caggttcatc cctgagggcc tgcagtgctc ctgtggcccg gactggtaca
      601 ccgtgggcac caagtatcga agcgagcact atacctggtt tctgttcatc ttctgtttca
      661 tcattcctct ttccctcatc tgtttctcct acttccagtt gctgaggact ctcagagctg
      721 tggcggccca gcagcaagag tcagctacaa ctcaaaaggc tgaacgggag gtgagccata
      781 tggtggtggt gatggtggga tccttctgtc tctgctacgt gccctatgct gccctggcca
      841 tgtacatggt caacaatcgt aaccacgggc tggacttacg gcttgtcacc atccccgcct
      901 tcttttccaa gagttcatgt gtctacaacc ccatcatcta ctgcttcatg aataagcagt
      961 tccgggcctg catcctggag atggtgtgca ggaagcccat gacagacgaa tctgacatgt
     1021 ctggctctca gaaaacagaa gtttctactg tttcttccag caaagttggc cctcactaag
     1081 gaccctcagt tggcctgctg gcagcaacca tggggccaca ttgaattatc tacatctcca
     1141 ttagaattca aaccattaac aatgtaggga acagacagga gcagtggcat ctggccggtc
     1201 agtttcattt tcctgttact ctctccctgt cagcagggcc acacgggcca tttcaacagt
     1261 cacagtttct aagtgatacc ttcatctctg gagaactgtg agagaagggc cgtgcctctg
     1321 gtgtatgggt aacacctggt tgttctttta ttccgtgctg ggatctgagt tgatatatcc
     1381 tgttagaata agcttggcat ggggcagtgt gaagaaaaag cagcagacac caaacacctg
     1441 cagtgagctg aagctttcct atgcggcctc tcccagttgc tgccgtctgg gctatggctg
     1501 ccctgcccag aactgcccct cctcactcat ctgacagtta ttctaagtct tctcccctcc
     1561 atttggctaa atgtatccat ttaaagctgt gtgttgatta aagttagtgt cttaatctct
     1621 tgacgacctc aaaa
//
