LOCUS       XM_008766421             684 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus oocyte expressed protein (Ooep), mRNA.
ACCESSION   XM_008766421
VERSION     XM_008766421.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008766421.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008766421.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-248               JACYVU010000199.1  11839123-11839370   c
            249-431             JACYVU010000199.1  11838744-11838926   c
            432-505             JACYVU010000199.1  11838385-11838458   c
            506-684             JACYVU010000199.1  11838204-11838382   c
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..684
                     /gene="Ooep"
                     /note="oocyte expressed protein; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: deleted 2
                     bases in 1 codon; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 Proteins, and 87%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 15 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:301100"
                     /db_xref="RGD:1311103"
     CDS             50..571
                     /gene="Ooep"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 2 bases in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: oocyte-expressed protein
                     homolog"
                     /protein_id="XP_008764643.1"
                     /db_xref="GeneID:301100"
                     /db_xref="RGD:1311103"
                     /translation="MGPHKADAHAKPEKPTQDLSLINSQKLLSVPPVSLRLRVLPWWF
                     PVQELSNPMVFYLESWVAERIIGSDQDEISEIEWMSQALLSVNLANSGKLAEITIYGR
                     PSAQIRMKNILLNMVAWYKEDEVQRAVKLKQVEEFLKQHASSIITQASKGVRLKLTCS
                     PPLLEGREARMDS"
ORIGIN      
        1 gctaagccgc gcacctcctg gagcttgcag tctgagagtt ctttccagta tgggacctca
       61 caaggctgat gctcacgcca agccagaaaa accgactcag gacctctctc tcataaactc
      121 tcagaagctg ctcagcgtcc cgcctgtgtc cctgcgactt cgtgtgctgc cttggtggtt
      181 cccagtccag gaactcagca atcctatggt gttctacctg gaatcttggg tggcagaaag
      241 aatcattggc tcagaccaag acgaaatctc agaaatagag tggatgagcc aggccttgct
      301 gagcgtgaac ttggccaact ctgggaaact agctgaaatc accatctatg gacgacccag
      361 tgcacagatt cgaatgaaaa atattctctt gaacatggtg gcttggtaca aagaagacga
      421 agtccaaaga gctgtgaagc tgaaacaagt tgaagagttt ttaaaacaac atgcgtcctc
      481 aatcataacc caagcgtcaa agggcgttag actcaagctg acttgcagcc cgcctctgct
      541 ggagggaaga gaagcacgga tggattctta aatcactaca ggtgttttct tacctgcctt
      601 catgagcacc ttctggattt tgtttttttt ctttgcaaat agcaattcgt tgaactattc
      661 caataaaaaa aatttttttt ggta
//
