LOCUS       NM_031817               1803 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus osteomodulin (Omd), mRNA.
ACCESSION   NM_031817
VERSION     NM_031817.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1803)
  AUTHORS   Couble,M.L., Bleicher,F., Farges,J.C., Peyrol,S., Lucchini,M.,
            Magloire,H. and Staquet,M.J.
  TITLE     Immunodetection of osteoadherin in murine tooth extracellular
            matrices
  JOURNAL   Histochem Cell Biol 121 (1), 47-53 (2004)
   PUBMED   14673660
REFERENCE   2  (bases 1 to 1803)
  AUTHORS   Petersson,U., Hultenby,K. and Wendel,M.
  TITLE     Identification, distribution and expression of osteoadherin during
            tooth formation
  JOURNAL   Eur J Oral Sci 111 (2), 128-136 (2003)
   PUBMED   12648264
  REMARK    GeneRIF: may play an important role during tooth development and
            biomineralization of dentin
REFERENCE   3  (bases 1 to 1803)
  AUTHORS   Shen,Z., Gantcheva,S., Sommarin,Y. and Heinegard,D.
  TITLE     Tissue distribution of a novel cell binding protein, osteoadherin,
            in the rat
  JOURNAL   Matrix Biol 18 (6), 533-542 (1999)
   PUBMED   10607915
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On May 30, 2015 this sequence version replaced NM_031817.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF104362.1, SRR26360194.259899.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840107,
                                           SAMN12840111 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-299               JAXUCZ010000017.1  15274572-15274870   c
            300-1247            JAXUCZ010000017.1  15267945-15268892   c
            1248-1803           JAXUCZ010000017.1  15266646-15267201   c
FEATURES             Location/Qualifiers
     source          1..1803
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p14"
     gene            1..1803
                     /gene="Omd"
                     /gene_synonym="OSAD"
                     /note="osteomodulin"
                     /db_xref="GeneID:83717"
                     /db_xref="RGD:621818"
     exon            1..299
                     /gene="Omd"
                     /gene_synonym="OSAD"
                     /inference="alignment:Splign:2.1.0"
     exon            300..1247
                     /gene="Omd"
                     /gene_synonym="OSAD"
                     /inference="alignment:Splign:2.1.0"
     CDS             308..1579
                     /gene="Omd"
                     /gene_synonym="OSAD"
                     /note="osteoadherin; KSPG osteomodulin; keratan sulfate
                     proteoglycan osteomodulin"
                     /codon_start=1
                     /product="osteomodulin precursor"
                     /protein_id="NP_114005.2"
                     /db_xref="GeneID:83717"
                     /db_xref="RGD:621818"
                     /translation="MGFLSPIYVLFFCFGVRVYGQYEAYQWDEDYEQEPSEDYEPEFQ
                     FHQNIEYGAPFYQNILGCAKECFCPTNFPTSMYCDNRKLKTIPDIPMHIQQLNLQFND
                     IEAVTADSFINATHLKEINLSHNKIKSQKIDYGVFAKLSNLQQLHLDHNNLEEFPFPL
                     PKSLERLLLGYNEISTLPTHAMDGLVNVTMLDLCYNHLSDSTLKGKILSKLEKLMQLN
                     LCNNRLESMPPGLPSSLMYLSLENNSISSIPEDYFQKLPKLHALRISHNKLEDIPYDI
                     FNLSNLIELNVGHNKLKQAFYIPRNLEHLYLQNNEIQSINVTMMCPSLDPLHHHHLTY
                     LRVDQNKLKEPISSYIFFCFPRIHSIYYGEQRSTNGETIQLKTQVFRRYQDEEEEEED
                     DSQDHTLEGQEETEEHFNSHYYEMQAWQNTI"
     exon            1248..1803
                     /gene="Omd"
                     /gene_synonym="OSAD"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caaaattaag gagaaaagaa agaagtaagc cacataaatc tgaccaagaa cacaaacatc
       61 ttgctttgaa tccacaaaat tctgtataat gaaaagaagt acaaaatttt aattcaaccc
      121 aagtgttttc caagcagatt gtatttactt aaattgctac agtaattcaa aggacagccc
      181 tgtctggaca cagagttact gtggattttt aagaaactcc gttaaagaat ttaggcactt
      241 ctgattcagt taaaggattg ccaattcatc aatccctgaa accaaagcaa tctcaacagg
      301 agaagaaatg ggctttttaa gtccaatata tgtcctcttc ttctgttttg gagttagagt
      361 atacggccaa tatgaagctt accagtggga tgaagattat gagcaagagc caagtgagga
      421 ttatgagcca gaattccagt ttcaccaaaa tatcgaatat ggagctccct tttatcagaa
      481 tattttaggt tgtgctaagg aatgcttctg tccaactaac tttccaacat caatgtactg
      541 tgacaaccgc aaactcaaga ctatcccaga tattccaatg cacattcagc aactcaacct
      601 tcagttcaat gatattgagg ctgtgactgc agattcattc atcaatgcaa ctcatcttaa
      661 agaaattaac cttagccaca acaaaattaa atctcaaaag attgattatg gtgtgtttgc
      721 taaactttca aatctacagc aacttcatct agatcacaat aacttagaag aatttccatt
      781 tcctcttcct aaatctctgg aaagactcct tcttggttat aatgaaatct ctacacttcc
      841 aacacatgcc atggatgggc tggtaaatgt cactatgctt gacctctgct ataaccatct
      901 ctctgactcc acgttaaaag gaaagattct ttccaaactg gaaaagctca tgcagcttaa
      961 cctgtgcaat aacaggttag agtcaatgcc ccctgggttg ccgtcatcac ttatgtatct
     1021 atctttagaa aataattcaa tttcatctat accagaggat tactttcaga aacttccaaa
     1081 acttcatgct ctaagaatat cacacaacaa acttgaagac attccatatg acatctttaa
     1141 tctttccaat cttatagaac tcaatgttgg acataacaaa ctgaagcaag cattctacat
     1201 tccaaggaat ttggaacatc tatacctaca aaataatgaa atacaaagca tcaatgtgac
     1261 aatgatgtgt ccttctcttg atccattaca ccatcaccat ttaacatacc ttcgtgtgga
     1321 ccaaaataag ctgaaggaac caataagttc atatatcttc ttctgcttcc ctcggataca
     1381 cagtatttat tatggtgagc agaggagcac taatggtgaa acaatacaac tgaagaccca
     1441 agttttcagg cgctatcaag atgaggaaga ggaagaggaa gacgacagtc aggaccacac
     1501 tcttgagggt caagaagaaa cagaagagca ctttaattct cattactatg aaatgcaagc
     1561 atggcaaaat actatatagg tacatattta tgactccata aagccttact aattacaaat
     1621 gtaagcgtat acctgctcat aataatatat ctagaagtat gtgctagtat aaagacccga
     1681 attgcatttg agatgttagt gagaatggtt ttacttcata ggcgtagtgc ttactagaaa
     1741 cgatgcaaac cttaagaaat ataaagtaga atggcaagtg ggaataaaca aactaagctc
     1801 aaa
//
