LOCUS       NM_001000865             939 bp    mRNA    linear   ROD 24-OCT-2024
DEFINITION  Rattus norvegicus olfactory receptor 1177 (Olr1177), mRNA.
ACCESSION   NM_001000865
VERSION     NM_001000865.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 939)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 939)
  AUTHORS   Gibbs,R.A., Weinstock,G.M., Metzker,M.L., Muzny,D.M.,
            Sodergren,E.J., Scherer,S., Scott,G., Steffen,D., Worley,K.C.,
            Burch,P.E., Okwuonu,G., Hines,S., Lewis,L., DeRamo,C., Delgado,O.,
            Dugan-Rocha,S., Miner,G., Morgan,M., Hawes,A., Gill,R., Celera,
            Holt,R.A., Adams,M.D., Amanatides,P.G., Baden-Tillson,H.,
            Barnstead,M., Chin,S., Evans,C.A., Ferriera,S., Fosler,C.,
            Glodek,A., Gu,Z., Jennings,D., Kraft,C.L., Nguyen,T.,
            Pfannkoch,C.M., Sitter,C., Sutton,G.G., Venter,J.C., Woodage,T.,
            Smith,D., Lee,H.M., Gustafson,E., Cahill,P., Kana,A.,
            Doucette-Stamm,L., Weinstock,K., Fechtel,K., Weiss,R.B., Dunn,D.M.,
            Green,E.D., Blakesley,R.W., Bouffard,G.G., De Jong,P.J.,
            Osoegawa,K., Zhu,B., Marra,M., Schein,J., Bosdet,I., Fjell,C.,
            Jones,S., Krzywinski,M., Mathewson,C., Siddiqui,A., Wye,N.,
            McPherson,J., Zhao,S., Fraser,C.M., Shetty,J., Shatsman,S.,
            Geer,K., Chen,Y., Abramzon,S., Nierman,W.C., Havlak,P.H., Chen,R.,
            Durbin,K.J., Simons,R., Ren,Y., Song,X.Z., Li,B., Liu,Y., Qin,X.,
            Cawley,S., Worley,K.C., Cooney,A.J., D'Souza,L.M., Martin,K.,
            Wu,J.Q., Gonzalez-Garay,M.L., Jackson,A.R., Kalafus,K.J.,
            McLeod,M.P., Milosavljevic,A., Virk,D., Volkov,A., Wheeler,D.A.,
            Zhang,Z., Bailey,J.A., Eichler,E.E., Tuzun,E., Birney,E.,
            Mongin,E., Ureta-Vidal,A., Woodwark,C., Zdobnov,E., Bork,P.,
            Suyama,M., Torrents,D., Alexandersson,M., Trask,B.J., Young,J.M.,
            Huang,H., Wang,H., Xing,H., Daniels,S., Gietzen,D., Schmidt,J.,
            Stevens,K., Vitt,U., Wingrove,J., Camara,F., Mar Alba,M.,
            Abril,J.F., Guigo,R., Smit,A., Dubchak,I., Rubin,E.M., Couronne,O.,
            Poliakov,A., Hubner,N., Ganten,D., Goesele,C., Hummel,O.,
            Kreitler,T., Lee,Y.A., Monti,J., Schulz,H., Zimdahl,H.,
            Himmelbauer,H., Lehrach,H., Jacob,H.J., Bromberg,S.,
            Gullings-Handley,J., Jensen-Seaman,M.I., Kwitek,A.E., Lazar,J.,
            Pasko,D., Tonellato,P.J., Twigger,S., Ponting,C.P., Duarte,J.M.,
            Rice,S., Goodstadt,L., Beatson,S.A., Emes,R.D., Winter,E.E.,
            Webber,C., Brandt,P., Nyakatura,G., Adetobi,M., Chiaromonte,F.,
            Elnitski,L., Eswara,P., Hardison,R.C., Hou,M., Kolbe,D., Makova,K.,
            Miller,W., Nekrutenko,A., Riemer,C., Schwartz,S., Taylor,J.,
            Yang,S., Zhang,Y., Lindpaintner,K., Andrews,T.D., Caccamo,M.,
            Clamp,M., Clarke,L., Curwen,V., Durbin,R., Eyras,E., Searle,S.M.,
            Cooper,G.M., Batzoglou,S., Brudno,M., Sidow,A., Stone,E.A.,
            Venter,J.C., Payseur,B.A., Bourque,G., Lopez-Otin,C., Puente,X.S.,
            Chakrabarti,K., Chatterji,S., Dewey,C., Pachter,L., Bray,N.,
            Yap,V.B., Caspi,A., Tesler,G., Pevzner,P.A., Haussler,D.,
            Roskin,K.M., Baertsch,R., Clawson,H., Furey,T.S., Hinrichs,A.S.,
            Karolchik,D., Kent,W.J., Rosenbloom,K.R., Trumbower,H.,
            Weirauch,M., Cooper,D.N., Stenson,P.D., Ma,B., Brent,M.,
            Arumugam,M., Shteynberg,D., Copley,R.R., Taylor,M.S., Riethman,H.,
            Mudunuri,U., Peterson,J., Guyer,M., Felsenfeld,A., Old,S.,
            Mockrin,S. and Collins,F.
  CONSRTM   Rat Genome Sequencing Project Consortium
  TITLE     Genome sequence of the Brown Norway rat yields insights into
            mammalian evolution
  JOURNAL   Nature 428 (6982), 493-521 (2004)
   PUBMED   15057822
COMMENT     REVIEWED REFSEQ: This record has been curated by Janet Young and
            Barbara Trask (FHCRC). The reference sequence was derived from
            JAXUCZ010000008.1.
            
            Summary: Olfactory receptors interact with odorant molecules in the
            nose, to initiate a neuronal response that triggers the perception
            of a smell. The olfactory receptor proteins are members of a large
            family of G-protein-coupled receptors (GPCR) arising from single
            coding-exon genes. Olfactory receptors share a 7-transmembrane
            domain structure with many neurotransmitter and hormone receptors
            and are responsible for the recognition and G protein-mediated
            transduction of odorant signals. The olfactory receptor gene family
            is the largest in the genome. [provided by RefSeq, Jul 2008].
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-939               JAXUCZ010000008.1  26602693-26603631   c
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q13"
     gene            1..939
                     /gene="Olr1177"
                     /note="olfactory receptor 1177"
                     /db_xref="GeneID:405160"
                     /db_xref="RGD:1333851"
     CDS             1..939
                     /gene="Olr1177"
                     /note="olfactory receptor gene Olr1177"
                     /codon_start=1
                     /product="olfactory receptor Olr1177"
                     /protein_id="NP_001000865.1"
                     /db_xref="GeneID:405160"
                     /db_xref="RGD:1333851"
                     /translation="MIHNDVKNLTDVLEFHLMAISEDPDLQLFLFGLFLSVYLVTVLG
                     NLLIILLIIFDSHLHTPMYFFLSNLSLIDIFFISTTIPKMIVGLKIHSRVISYAGCLT
                     QMSLFLLFVCMDDMILTVMAYDRFVAICHPLRYTVIMNPQVCVILIVLSFPVSVFESQ
                     LHNLIAIQVTCFKDVEIANFFCHPSQLLNLACSNTLSSNIVIYFIGVILGIFPVLGII
                     LSYCKIVFSILKIPSSSRKYKAFSTCGSHLSVVCLFYGTGIGVYLGSAVSHSPQKNAV
                     ASLIYTAVSPMLNPFIYSLRNRDISSALKRFHSRVF"
     exon            1..939
                     /gene="Olr1177"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgattcata atgatgtaaa gaatttaaca gatgtcttgg aattccatct catggcaatt
       61 tcagaggatc cagatctgca gcttttcctc tttggattat tcctatcagt ttacctggtc
      121 acagtgcttg ggaacctgct catcatcctg ctcatcatct ttgactcaca cctccatacc
      181 cctatgtact ttttcctgtc caacttatct ttgattgata tatttttcat ctctaccacc
      241 atcccaaaga tgattgtggg cctcaaaata catagcagag ttatttccta tgcaggctgc
      301 ttgacacaaa tgtctctttt tctacttttt gtatgtatgg atgacatgat tctaactgtg
      361 atggcttatg accgatttgt ggccatctgt catccacttc gttacactgt cattatgaac
      421 cctcaggtct gtgttatctt aattgtgttg tcttttccag tcagtgtttt tgagtcacag
      481 ctgcacaact tgattgccat acaagttact tgcttcaagg acgtggaaat tgcaaatttc
      541 ttctgtcatc cttcacaact ccttaatctt gcttgttcta atacactcag cagtaacata
      601 gtaatatatt ttattggtgt catacttggc atttttcctg tcctagggat cattttatca
      661 tactgtaaaa tcgttttctc cattctgaaa atcccatcct ccagtaggaa atataaagcc
      721 ttctccacct gcggttctca tctgtcagta gtttgtttgt tttatggaac tgggattggt
      781 gtgtaccttg gctcagctgt gtcacattct ccacaaaaga atgcagtggc ttcactgata
      841 tacactgcag tgagccctat gcttaatcct ttcatctaca gcctgaggaa tagagatatc
      901 agtagtgccc tgaagagatt ccacagtagg gttttctaa
//
