LOCUS       XM_056985109            1197 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus olfactory receptor 94, pseudogene 1
            (Olfr94-ps1), mRNA.
ACCESSION   XM_056985109
VERSION     XM_056985109.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_056985109.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio            :: 1% of CDS bases
            frameshifts          :: corrected 2 indels
            internal stop codons :: corrected 3 genomic stop codons
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-33                JACYVU010000320.1  1383425-1383457
            34-258              JACYVU010000320.1  1383459-1383683
            259-260             "NN"               1-2
            261-1197            JACYVU010000320.1  1383684-1384620
FEATURES             Location/Qualifiers
     source          1..1197
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1197
                     /gene="Olfr94-ps1"
                     /note="olfactory receptor 94, pseudogene 1; The sequence
                     of the model RefSeq transcript was modified relative to
                     its source genomic sequence to represent the inferred CDS:
                     inserted 2 bases in 1 codon; deleted 1 base in 1 codon;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 Protein, and 20% coverage of the
                     annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:502409"
                     /db_xref="RGD:1563740"
     CDS             1..1197
                     /gene="Olfr94-ps1"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 2 bases in 1 codon;
                     deleted 1 base in 1 codon; substituted 3 bases at 3
                     genomic stop codons"
                     /codon_start=1
                     /transl_except=(pos:97..99,aa:OTHER)
                     /transl_except=(pos:211..213,aa:OTHER)
                     /transl_except=(pos:217..219,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: putative olfactory receptor
                     2I1"
                     /protein_id="XP_056841089.1"
                     /db_xref="GeneID:502409"
                     /db_xref="RGD:1563740"
                     /translation="MKLCNKTKTWALLSSLAEFIPYWGFLLVVDSGXTRSYYIALELT
                     RQTRLASNSEISGLCFPVQGLHHRVLXHXTFLSHPSEPPWSFXPQANHSSAERFLLLG
                     FTDWPSLQPVFFVLVLLCYLLTLTGNAALVLLAIRDPRLHTPMYYFLCHLALVDVGFT
                     TSVVPPLLASLRGSVLQLPRAWCMAQLCSSLALGSAECVLLAVMALDRAAAVCNPLRY
                     ASLASPLLCRTLAGASWLGGLANSAAQTALLAARPLCAPRCLDHFICELPALLQLACR
                     GGRSATERQMFAARVVILLVPSAVILASYIAVGRAVWGMHSSSGWRKAASTCGSHLTA
                     VCLFYGSATYTYLQPTHSYNQGRGKFVSLFYTVVTPALNPLIYTLRNKEVKGAALRLL
                     RSLGRL"
ORIGIN      
        1 atgaaactat gtaacaaaac taaaacttgg gcactgcttt cctctcttgc ggagtttatc
       61 ccatattggg ggttcttgtt agttgtggat agtggttaga caaggtctta ctatatagct
      121 ctggaactta ctaggcagac caggctggcc tcgaactcag aaatttctgg cctttgcttc
      181 ccagtgcaag gcctgcacca ccgcgtcctc tagcattaaa catttttgtc tcacccttcc
      241 gaacctcctt ggagtttcnn ccctcaggcc aaccacagct cagcggagcg cttcctgctg
      301 ctgggtttca ccgactggcc ctctctgcag ccggtcttct tcgttctggt ccttctctgc
      361 tacctactaa cgctgaccgg caacgcggca ttggtgctgc tggccattcg cgaccctcgc
      421 ctgcacacac ccatgtacta cttcctctgc cacttggctc tagtggatgt gggcttcacc
      481 actagtgtgg tgccaccgct gctggccagc ctgcgcggct cagtgctgca gctaccgcgc
      541 gcctggtgca tggcgcagct gtgctcatcg ctggccctgg gctcagccga gtgcgtgctg
      601 ctggccgtta tggctctgga ccgcgcggct gccgtatgca accctctacg ttacgcctca
      661 ctcgcctccc cgcttctgtg ccgcacattg gccggagcct cctggctcgg tggcctggcc
      721 aactccgcag cgcagaccgc cctgctggcc gcgcgtccgc tgtgcgcgcc ccgctgtctg
      781 gaccatttta tctgcgagct gcccgcgctg ctgcagctgg cctgccgcgg cggccgcagc
      841 gccaccgagc gccagatgtt cgccgcccgt gtggtcatcc tgttggtgcc ttcggcggtc
      901 atcctggcct cctacatcgc cgtgggccgc gcggtctggg gcatgcactc cagctccggc
      961 tggcggaaag ccgcgagcac atgtggctct cacttgaccg ccgtctgcct attttatggt
     1021 tcagccacct acacttatct gcaacccacg catagttaca accagggccg cgggaagttc
     1081 gtctcgctct tctacacggt ggtgacaccc gcgctcaatc ctctcatcta cacactgagg
     1141 aacaaggaag tgaagggggc agcactgagg ctcttgcgga gtctggggag actgtag
//
