LOCUS       NM_001106572            5867 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus olfactomedin-like 2A (Olfml2a), mRNA.
ACCESSION   NM_001106572 XM_001060614 XM_006234074 XM_231192
VERSION     NM_001106572.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5867)
  AUTHORS   Manabe,R., Tsutsui,K., Yamada,T., Kimura,M., Nakano,I., Shimono,C.,
            Sanzen,N., Furutani,Y., Fukuda,T., Oguri,Y., Shimamoto,K.,
            Kiyozumi,D., Sato,Y., Sado,Y., Senoo,H., Yamashina,S., Fukuda,S.,
            Kawai,J., Sugiura,N., Kimata,K., Hayashizaki,Y. and Sekiguchi,K.
  TITLE     Transcriptome-based systematic identification of extracellular
            matrix proteins
  JOURNAL   Proc Natl Acad Sci U S A 105 (35), 12849-12854 (2008)
   PUBMED   18757743
REFERENCE   2  (bases 1 to 5867)
  AUTHORS   Furutani,Y., Manabe,R., Tsutsui,K., Yamada,T., Sugimoto,N.,
            Fukuda,S., Kawai,J., Sugiura,N., Kimata,K., Hayashizaki,Y. and
            Sekiguchi,K.
  TITLE     Identification and characterization of photomedins: novel
            olfactomedin-domain-containing proteins with chondroitin
            sulphate-E-binding activity
  JOURNAL   Biochem J 389 (Pt 3), 675-684 (2005)
   PUBMED   15836428
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On or before Jan 6, 2022 this sequence version replaced
            XM_006234074.3, NM_001106572.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.13798.1,
                                           SRR26360186.853208.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760386, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-180               JAXUCZ010000003.1  43098299-43098478
            181-444             JAXUCZ010000003.1  43106758-43107021
            445-552             JAXUCZ010000003.1  43112431-43112538
            553-762             JAXUCZ010000003.1  43114372-43114581
            763-1027            JAXUCZ010000003.1  43116683-43116947
            1028-1282           JAXUCZ010000003.1  43118147-43118401
            1283-1468           JAXUCZ010000003.1  43121230-43121415
            1469-5867           JAXUCZ010000003.1  43123223-43127621
FEATURES             Location/Qualifiers
     source          1..5867
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q12"
     gene            1..5867
                     /gene="Olfml2a"
                     /note="olfactomedin-like 2A"
                     /db_xref="GeneID:296708"
                     /db_xref="RGD:1311651"
     exon            1..180
                     /gene="Olfml2a"
                     /inference="alignment:Splign:2.1.0"
     CDS             76..2073
                     /gene="Olfml2a"
                     /note="olfactomedin-like protein 2A"
                     /codon_start=1
                     /product="olfactomedin-like protein 2A precursor"
                     /protein_id="NP_001100042.2"
                     /db_xref="GeneID:296708"
                     /db_xref="RGD:1311651"
                     /translation="MEAAAVLPRCLQLRLLLVLLLLVLLRAGPVWPDSKVFSDLDQVR
                     MTSEGSDCRCKCIMRPLSKDACSRVRSGRARVEDFYTVETLSSGADCRCSCTAPPSSL
                     NPCENEWKMEKLKKQAPELLKLQSMVDLLEGALYSMDLMKVHAYIQKVASQMNTLEES
                     IKTNLSLENEVVKDSVRHLSEQLKSYENQSAIMMSIKKELSNLGLQLLQRDAAAIPAS
                     APASSSDNKAQDTAGGQGKELNKYGGIQKSFSDKSLAKPPKEKLLKVEKLKKETIKGR
                     IPPHPTARPRALAQQQAVIRGFTYYKAGRQEARQEAPKAAADNTLKGASWLEKLPPKT
                     EAKLPEPNSAKHDDIRLQASEGANLAPDFSTTTTTTTTTTTTTTTTTPTPITTPWPTE
                     PPLHPEVPSQGREDSCEGTLRAVDPPVKHHSYGRHEGAWMKDPAAPDDRIYVTNYYYG
                     NSLVEFRNLENFKQGRWSNMYKLPYNWIGTGHVVYQGAFYYNRAFTKNIIKYDLRQRF
                     VASWALLPDVVYEDTTPWKWRGHSDIDFAVDESGLWVIYPAMDEHGETQHEVIVVSRL
                     DPADLSVHRETTWKTRLRRNSYGNCFLVCGILYTVDTYNQHEGQVAYAFDTHTGTDAY
                     PQLPFLNEYSYTTQVDYNPKERVLYAWDNGHQLTYTLHFVV"
     exon            181..444
                     /gene="Olfml2a"
                     /inference="alignment:Splign:2.1.0"
     exon            445..552
                     /gene="Olfml2a"
                     /inference="alignment:Splign:2.1.0"
     exon            553..762
                     /gene="Olfml2a"
                     /inference="alignment:Splign:2.1.0"
     exon            763..1027
                     /gene="Olfml2a"
                     /inference="alignment:Splign:2.1.0"
     exon            1028..1282
                     /gene="Olfml2a"
                     /inference="alignment:Splign:2.1.0"
     exon            1283..1468
                     /gene="Olfml2a"
                     /inference="alignment:Splign:2.1.0"
     exon            1469..5867
                     /gene="Olfml2a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccacctcgg cagagctggg ctgcagcgcc gagctcgcag tactcgcgcg cagaggcgtc
       61 ggagcccaca cagctatgga agccgcagct gtcttgccta gatgcctcca gctgaggctg
      121 ctgctggtgc tgctgctgct ggttttgctt cgggctggtc ctgtgtggcc cgacagtaag
      181 gtgttcagtg acctggacca ggtgcggatg acctcggagg gctctgactg ccgctgcaaa
      241 tgcatcatgc gaccgctgag caaggatgcg tgcagccggg tgcgaagtgg gcgcgcacga
      301 gtcgaggatt tctacacagt ggagacactg agctcagggg ccgactgccg gtgctcctgc
      361 accgccccgc cctcctcact caacccctgt gagaacgagt ggaagatgga gaaactgaag
      421 aagcaggcac ccgagctcct caagctgcag tctatggtgg atctcctgga gggtgccctg
      481 tacagcatgg atctgatgaa agtacatgcc tacatccaga aggtggcctc gcagatgaat
      541 acgctggagg agagcatcaa gaccaacctg agcctggaga acgaggtggt gaaagacagc
      601 gtacgtcacc tcagcgagca actgaagagc tatgaaaacc agtcagccat catgatgagc
      661 atcaagaagg agctgtctaa cctgggcctc cagttgctgc agagggatgc ggctgccatc
      721 cctgccagtg ccccagcctc aagctccgac aacaaggctc aggacacagc tggagggcaa
      781 ggtaaagagc tcaataaata tggcggcata cagaagagtt tctcagacaa gagcctcgca
      841 aagcctccca aggagaagct gctgaaggtg gagaagctga agaaggagac catcaagggc
      901 agaatacccc cccaccccac cgccaggcca cgagctttag ctcagcagca agccgtgatc
      961 cgaggcttca cctactacaa ggcgggcaga caggaggcca gacaggaagc gcccaaggct
     1021 gccgctgaca acaccctcaa aggtgcttcc tggctggaga agttaccacc caagacagag
     1081 gccaagcttc cggagcctaa ctctgccaaa catgatgaca tcaggctgca ggcttcagag
     1141 ggagccaact tggcccctga tttctccacc accaccacca ccaccactac aaccaccact
     1201 accaccacca ccaccacccc aacccctatc accactccct ggcccactga gccccctttg
     1261 catccagaag tccccagcca aggtcgggag gacagctgtg agggcacgct ccgagctgtg
     1321 gatccccctg tgaagcatca cagttatggg cgccacgagg gagcctggat gaaggaccct
     1381 gcagctccag atgacaggat ctatgtcacc aactactact acggaaacag cctggtggaa
     1441 tttcgaaacc tggaaaattt caaacaaggc cggtggagta atatgtacaa gctgccctac
     1501 aactggatag gcacaggcca cgttgtgtac cagggtgcct tctactacaa ccgtgccttc
     1561 accaagaata tcatcaaata tgacctgcgc caacgctttg tggcctcctg ggctctgctg
     1621 cccgatgtgg tctatgagga taccacaccc tggaagtggc gtggccactc ggacattgac
     1681 tttgctgtgg atgagagtgg cctgtgggtc atctacccag ccatggatga gcatggcgaa
     1741 acacagcatg aggtgattgt ggtgagccgc ttggaccctg cagacctctc tgtgcaccgg
     1801 gagaccacat ggaagacgcg gctgaggagg aactcctatg ggaactgctt tctggtgtgc
     1861 ggcatcctct acacggtgga cacttacaac cagcatgaag gccaagtggc ctatgcgttc
     1921 gatacccaca ccggcactga tgcttaccca cagttgccct tcctcaatga atattcctat
     1981 accacccagg ttgactacaa ccccaaggag cgggtgctct atgcctggga caatggccac
     2041 cagctcacct acactctcca ctttgtcgtc tgaatgggga cccatggtca caaaggaggg
     2101 cagcagaaga gaaggggcta tccttagcaa cccctgcaat tgatataagt atcagttggg
     2161 ggtgtcctgg gctaggtatt ggctttgatg gctttgagta ctttcttagt gcccagtagg
     2221 tgacacttgc acagcaatgc tgtgctagga gcttttcctg cgcttaccct tttgactctt
     2281 tctacttctt cccttgaagg cagaggttcc taagcccatt gaacagatga agtgactaaa
     2341 gcccaaagga gcagcattcc agatgggcag gctacgtcct cacagtagcc acatttgaca
     2401 gatgagaatc cctcctccag tccccttcca gggctctgca gagcctgagg tctttgggac
     2461 ctatgcagtg gtgtcctgca gctccaggcc tctcctctga ctgaatgctg gtaaccttga
     2521 gcttagagct tcttgaccta tggtcagccc ctgtgctctc ttgctcttct gtctaaccac
     2581 attccaaaag ttcatcatca cagacactaa gcagtcactg aagcaaatgc tggccaggtc
     2641 catggccctt cctctgtagc gacttcttgt ccctatgttc cttgcacatt ttgcagcaga
     2701 tgggaagata taggcagcta agctctggca gtgttggtgc tggcctgagc ttccccccat
     2761 ttcaactcct ctaccagaag tcctcgcctt ggccatccac taggcctcgg ctccttcctt
     2821 agcccttccc aaagccttgg gccaggggcc ttttctgggc cttgaaagct attctgtcca
     2881 cactcaggga ttgctaagag taaggccttt gtccccagag agggtggcca caagatggaa
     2941 caggttctgt ttcccttgtt gatcgaagtc tggtcatttg gtgggttgat tcagcagcct
     3001 gggaatctga gggagacagg acagcagggt tcagaggaga cttctcagtt cgcaggacaa
     3061 aacccggagg tagaggcagg ggagggtaga ctgcggtctc agcaccagga ttttctttga
     3121 gatgggactt gggtttgtgg acacacaact gaacatatat aagctacctt aaaataggat
     3181 tggcagctag ctgtcctggt acggcttgtg gccctcagag ccttcagacc cagatagccc
     3241 tgagaacaag accttgcaag ccagcctatg gcagctttgg gcattctttt taaagctgga
     3301 gggaagttct ttttcccatc ttgttttacc aaagaaaata taggtcccaa tggttctagg
     3361 gtatggacgg agtcatacag tgcgaggtac agctgatctc ctttggaaaa gccctatact
     3421 gagacagctc tgcctgcaaa aaacaacaga tccccagtac cttgaaggtg tctactgctg
     3481 cccctggacc ctggacactt ccttgtgccc tgtgcccgct cctaggatac ccgcagtgaa
     3541 atatgaacca atttatgaaa tcccgctgtg cagtactctg tagagcgatt caggttctgt
     3601 gcagccttgc tgtcttctgg acattgttgg gagatgtttt acttaaggaa caactccctc
     3661 ctgaaataaa gagggacagt ggtagccagc ccagccaggt ctgactcaca gtggtagcca
     3721 catccagctt cccccaccca gctgaccacc acaggctact cctccagcct cttcagagaa
     3781 cttggaggcc ccggccttcc ccttggccct gggtgtgggt cttttcaaga ctctgtgttt
     3841 tgtgatgtca tagtccaacc atgtgagagg tgctcaggca acagcctgag tagagggaac
     3901 gctaggacac actggttttg aaaagtaaac atgtggcata gtttcctggg gtgggacaca
     3961 gggcctcaat tgtcctcaag tgtcctccag gccccttcag gcctttgtgt gttgtatggt
     4021 aaacacagtt catttcctca cttgtaaacg gtcataccgg atgccaagta actcacttgt
     4081 cacataggct ggtaatgaaa gaaccaggct tccaaatcag gtaagctgtc actgtcatct
     4141 ggaaaccatc agtgtgctgg acatactgtg gaaagtaaac tacaaaaggc gccatggaca
     4201 ggtgaggaca atgacaggaa tttactcagg atcacacaag caatgtggtc tggggcaagg
     4261 ctaggggttc aaggctcatc agagcatgtt tcctgctgtc aacaaattcc aaaagtttgc
     4321 tggtagttgc agtcagtcaa gatggcctgg gcaagagctc cccaaaaggc ccggttctac
     4381 aaagctttga acaccaagcc aaggagggcc acatctagcc ttgtctagga cacaactgag
     4441 tcaattaaca gagccaagga aattccaaca gtttctaatt agattttgtc ctattggtaa
     4501 tgagaaacat gcaagggatt ttgctaagga gcctgaatct gccaatctgt gaactctaaa
     4561 ggagacccca gctcccacta ccacacacac aaacacacac acactcacag acacctatgc
     4621 acacttacca catacatgcc acacatatac acactatgca catctttaca cacatacact
     4681 tctcacatcc cacacgaaca catgtgtgca ctcacacata ccttgggtag catttttctg
     4741 gggaatagat acttcataga aggagggatc tggactgtac agaactgccc ccgacctttc
     4801 tataaggaca gagcatcctg cacctctgaa cagctctaca ggtgaatggg ctttggcttc
     4861 catcactgat tcctctctgg aggttgccag gccttgagtg gtgctgggca caactcggga
     4921 cccagtagag aatcttattc tccctcctgc attgaagatc cagcactgtg tgactgtcag
     4981 agtcctaggt gcaggggaat tgggagcccg ggttagtttc cagttggcct ccttctcagg
     5041 ctgagtaggg gtattaactc cctcacagaa gtgggactaa ggcttagtga gaacacaaga
     5101 ccttaggaga cctcacagca cttcccagaa ctggaagtca ctttgacctg cagtctatac
     5161 taacccacct tggaatcccc aattggcagt gtcttctctc attataggtt atgaacctcg
     5221 agttcagaga aattgagcta ttcggtcagg gtccggtacc tggcatatgg aggtgagatt
     5281 cgaactaggt ctctttaaac caaagccccc agctaactgt tgaagtagtc atgtttttgt
     5341 ttttgctttc gtggtttaga acaataggaa gctcaacgac aagtttgaga ttattttaaa
     5401 tgcttatatg gagtttaacc agcttcattc tagctctttg catgtacctt taccccgatt
     5461 tatttttatt ctactgtatt ttttatactg tatttttttg taaggtgcca caagatcttt
     5521 ttgcaacagg gtagcatata cataaataaa acccatgact atagctggat gtggtggctc
     5581 aggcctttgg tccatgtgcc tgggaggcag gggcagacag atttctgaat tcaaggccag
     5641 cctggtctac aaatcaagtt ccaggactcc cagagctaca cagagaaact atctcaaaaa
     5701 gaaaaagaaa aatgtactga aagctttatt taaactctta agcactgtgg actacaacct
     5761 tgggtatagc tccatgtcag agcgcttgcc tagtgtgtat gagggcctga gtctggttcc
     5821 cagcatcaag catcaatcaa taaataaagt gtttctgggt cggtata
//
