LOCUS       NM_145777               3910 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus olfactomedin 3 (Olfm3), mRNA.
ACCESSION   NM_145777
VERSION     NM_145777.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3910)
  AUTHORS   Schwenk,J., Harmel,N., Brechet,A., Zolles,G., Berkefeld,H.,
            Muller,C.S., Bildl,W., Baehrens,D., Huber,B., Kulik,A., Klocker,N.,
            Schulte,U. and Fakler,B.
  TITLE     High-resolution proteomics unravel architecture and molecular
            diversity of native AMPA receptor complexes
  JOURNAL   Neuron 74 (4), 621-633 (2012)
   PUBMED   22632720
REFERENCE   2  (bases 1 to 3910)
  AUTHORS   Grinchuk,O., Kozmik,Z., Wu,X. and Tomarev,S.
  TITLE     The Optimedin gene is a downstream target of Pax6
  JOURNAL   J Biol Chem 280 (42), 35228-35237 (2005)
   PUBMED   16115881
  REMARK    GeneRIF: Pax6 regulation of Optimedin in the eye and brain may
            directly affect multiple developmental processes, including cell
            migration and axon growth
REFERENCE   3  (bases 1 to 3910)
  AUTHORS   Torrado,M., Trivedi,R., Zinovieva,R., Karavanova,I. and
            Tomarev,S.I.
  TITLE     Optimedin: a novel olfactomedin-related protein that interacts with
            myocilin
  JOURNAL   Hum Mol Genet 11 (11), 1291-1301 (2002)
   PUBMED   12019210
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Nov 27, 2020 this sequence version replaced NM_145777.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF442822.1, SRR26643298.13178.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-222               JAXUCZ010000002.1  205598959-205599180
            223-369             JAXUCZ010000002.1  205607485-205607631
            370-525             JAXUCZ010000002.1  205614075-205614230
            526-745             JAXUCZ010000002.1  205618926-205619145
            746-852             JAXUCZ010000002.1  205635918-205636024
            853-3910            JAXUCZ010000002.1  205637422-205640479
FEATURES             Location/Qualifiers
     source          1..3910
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q42"
     gene            1..3910
                     /gene="Olfm3"
                     /note="olfactomedin 3"
                     /db_xref="GeneID:252920"
                     /db_xref="RGD:628672"
     exon            1..222
                     /gene="Olfm3"
                     /inference="alignment:Splign:2.1.0"
     CDS             94..1530
                     /gene="Olfm3"
                     /note="noelin-3; optimedin"
                     /codon_start=1
                     /product="noelin-3 precursor"
                     /protein_id="NP_665720.1"
                     /db_xref="GeneID:252920"
                     /db_xref="RGD:628672"
                     /translation="MSAPLLKLGAVLSTMAMISNWMSQTLPSLVGLNTTRLSAPDTLT
                     QISPKEGWQVYSSAQDPDGRCICTVVAPEQNLCSRDAKSRQLRQLLEKVQNMSQSIEV
                     LNLRTQRDFQYVLKMETQMKGLKAKFRQIEDDRKTLMTKHFQELKEKMDELLPLIPVL
                     EQYKTDAKLITQFKEEIRNLSSVLTGIQEEIGAYDYEELHQRVLSLETRLRDCMKKLT
                     CGKLMKITGPITVKTSGTRFGAWMTDPLASEKNNRVWYMDSYTNNKIVREYKSIADFV
                     SGAESRTYNLPFKWAGTNHVVYNGSLYFNKYQSNIIIKYSFDLGRVLAQRSLEYAGFH
                     NVYPYTWGGFSDIDLMADEIGLWAVYATNQNAGNIVISQLNQDTLEVMKSWSTGYPKR
                     SAGESFMICGTLYVTNSHLTGAKVYYSYSTKTSTYEYTDIPFHNQYFHISMLDYNARD
                     RALYAWNNGHQVLFNVTLFHIIKTEDDT"
     exon            223..369
                     /gene="Olfm3"
                     /inference="alignment:Splign:2.1.0"
     exon            370..525
                     /gene="Olfm3"
                     /inference="alignment:Splign:2.1.0"
     exon            526..745
                     /gene="Olfm3"
                     /inference="alignment:Splign:2.1.0"
     exon            746..852
                     /gene="Olfm3"
                     /inference="alignment:Splign:2.1.0"
     exon            853..3910
                     /gene="Olfm3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtagatgtgg cttgctgcag tcacgcctcc cgctgccagc cggggctccg ggatcctaat
       61 cagtcactat gaaaactcat tagctcttca gcaatgagtg ctccactgct gaagctgggc
      121 gctgtgctca gcaccatggc aatgatctca aactggatgt cccaaactct cccatccctt
      181 gtaggactga acaccacaag gctgtcggcg ccagatacct taactcagat tagccccaaa
      241 gaagggtggc aagtgtacag ctcagcacag gaccccgatg gacgatgcat ttgtactgtg
      301 gtggctccag aacaaaacct gtgttccaga gatgccaaaa gcaggcagct ccgccagcta
      361 ctggaaaagg tacagaatat gtcccagtct atagaagtct taaacttgag aactcagaga
      421 gattttcaat acgtcttaaa gatggaaacc caaatgaaag ggctgaaggc caagtttcgg
      481 cagattgaag atgatcggaa gacgctaatg accaagcatt ttcaagagtt gaaagagaaa
      541 atggacgagc tactgcccct catcccagtg ttggagcagt acaaaaccga cgcaaagctc
      601 atcacgcagt tcaaggagga aatccggaac ctgtcttcag tcctcactgg gattcaggag
      661 gaaatcggtg cctatgacta tgaagaactg caccaacggg tcctcagctt agaaactagg
      721 cttcgtgact gcatgaaaaa gctaacgtgt ggcaaactga tgaaaatcac aggccccatc
      781 acagtcaaga catctggaac tcgatttggt gcttggatga ctgatccttt agcatcagaa
      841 aagaataaca gagtctggta catggacagt tacactaaca ataaaatagt tcgtgagtac
      901 aagtccattg cagactttgt tagtggagct gaatcaagga catacaacct ccctttcaag
      961 tgggcaggaa ctaaccacgt ggtctacaat ggctccctct actttaacaa gtatcaaagt
     1021 aatatcatca tcaagtacag ctttgattta gggagagtgc tagcccaaag aagcctggag
     1081 tatgctggtt ttcacaatgt gtacccctac acgtggggtg gattctccga cattgaccta
     1141 atggctgatg aaattgggct gtgggctgta tatgcaacta accagaatgc aggcaatatt
     1201 gtcatcagcc agcttaatca agataccttg gaggtgatga agagctggag cactggctat
     1261 cccaagagaa gtgcagggga atccttcatg atctgtggga ctctgtatgt caccaattcc
     1321 cacttaacag gagccaaagt gtattattcc tattccacaa aaacctccac atatgagtac
     1381 acagacatcc ccttccataa ccaatacttt cacatatcta tgcttgacta caatgcaaga
     1441 gatagagctc tttatgcctg gaacaatggc caccaagtcc tattcaatgt taccctgttc
     1501 cacatcatta agactgaaga tgacacatag acaaatgtca tttcttttca tctatctata
     1561 ctgtcattca tgataaactc tataggaccc tgtctgtgtt taattttttt ctccttgact
     1621 ggcttgtcat catttctcca atgcaaagaa ttttattgta tgtttggagt ttcaaaaagt
     1681 gtttgtctaa gttagcatat tggaaacaaa tcttaaatcc aaaatctgca gggcctatcc
     1741 tgcccttgtc atgcaaagca ctaaaaagag tttaagtggc tagagtcata gtttcgcaaa
     1801 agattaatga tctgccttgt attagaatca gattaatggt ggcttaaatg catgaatgtc
     1861 ttctcttttt aactgtcttc tttttactgt ctcttgctct acatcaagaa atattttcat
     1921 aggaattaag gtaaaagaaa agcactttcc caacatttat ttctacaaga agatttaaag
     1981 attttattta tatgggaaac attatcaatc atgttactct taccacattc cctgatgcgg
     2041 tgctgtgcag tcatttctaa atctcttgct cgcattttcc tggctatacg tatttctatt
     2101 gctgtcacca ctatcacaca attgtattcc ttcacttctg tgaaagtaat attttttata
     2161 aagtgcacta aaatttaatc tcagtaatta ctcaagtcag ttctcaagtc tgattaagaa
     2221 agaccttctt ggcttgccct ttctcataag cactataaaa ttaaaaaaaa aatcagacat
     2281 tctctataga atgtttgttt tatcccccat tctactgttg gctctgaatt tgaacaccaa
     2341 ttcaatgtag tgattccctg atttctagaa gtattcacat aattgtttgt aaaatacgtc
     2401 actgtgttaa aaagactaga gttgattcta ttcatttatc attattagta ttagtaccat
     2461 atattagtat tttaacacat tttgcataca attttcaata gtttatttct tatacaatat
     2521 gaagcacatg aagattatta agaaaaggaa atttatgcaa tgttttctat attaaaatta
     2581 taaaccctgg agagttattg gcaaacttgt ataaaaaaat tatcaaaaga actgggagtt
     2641 gtttattgtt tcaaatgtat aaataaccaa ttcagaaaat gaaatgagaa ttcaatcccc
     2701 tgataacttg cctcactgtg tgtggaaaat taaagtgaaa gtcaaaactt tgataacatt
     2761 tgtgttacct gttctacaaa tactgaacaa atcaatgagt ttagaagtaa tttccctatg
     2821 ttaaaaagaa ttccgctgag gcaacactat gaaaactaat agagatgcat tttaaatttc
     2881 taaaaatata ttctaagatg aatgacacat aacttacagt gcaatttttg tctcacatgt
     2941 atacaatacc acaataataa gataaacaat gataatgaag acacagcact ctataaaaag
     3001 atactgatac ttagaataat tcatttcaag ttctacaagt gaagagtcat tctcaactat
     3061 catcctatca aggaggaaaa cctaagtact ttaatattga aacccaagat tgaatgagta
     3121 gatttttttc tttttagttt ttgtttgttt gtttggtttg gtttggtttt tttgtcaaca
     3181 aaagttaagc atgatctaat gggaacactg catcttttta taatgatgtc ttcttctctt
     3241 accaaaagtt catgtaagct ccagtctaca agtaagagtt agaaaattta ggagaatcat
     3301 ttgtcatact acacatatca caaaagcaag cagttcatat tttgtatagc aatttgtata
     3361 aggttaaaaa aatcatgtca gttttagaaa tgaatcaatt tttaggtaga cagactctaa
     3421 taggaacact tcctgttttt aacaacatgc tacgtggtat cacatacatt caaaatatgg
     3481 atgatcatgg cttttcgtga ggtgtgcatc ttgtacagag ccctgttgtt ttgtatgtat
     3541 gttttcatca ccctatctat ttatagcgta tgtgctgcta gagcaagcta agattttatt
     3601 gtcactagaa atggggtaac atgagcttta aaatatgact tgcattaaac actaaccgtt
     3661 tatgagcatt ttccttaata aattatgttc agttttgtgc ctgaaataaa taagaattta
     3721 atcactgttt cctttttaat ttccagcaaa taaagtaatt ttatgaggaa aataatgagt
     3781 attttaaaat catccataga gtctaagcag tgcagaaatc taaactcaga aaaccatcat
     3841 cctaagtgaa ctatgtaact gatattttct aaattaatca aatcattaaa gtacttccat
     3901 gtcattcaaa
//
