LOCUS       XM_039108420            1942 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus 8-oxoguanine DNA glycosylase (Ogg1),
            transcript variant X4, mRNA.
ACCESSION   XM_039108420
VERSION     XM_039108420.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039108420.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1942
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1942
                     /gene="Ogg1"
                     /note="8-oxoguanine DNA glycosylase; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 18
                     ESTs, 1 long SRA read, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 117
                     samples with support for all annotated introns"
                     /db_xref="GeneID:81528"
                     /db_xref="RGD:621168"
     CDS             444..1010
                     /gene="Ogg1"
                     /codon_start=1
                     /product="N-glycosylase/DNA lyase isoform X2"
                     /protein_id="XP_038964348.1"
                     /db_xref="GeneID:81528"
                     /db_xref="RGD:621168"
                     /translation="MVERLCQAFGPRLVQLDDVTYHGFPNLHALAGPEVETHLRKLGL
                     GYRARYVCASAKAILEEQGGPAWLQQLRVASYEEAHKALCTLPGVGTKVADCICLMAL
                     DKPQAVPVDIHVWQIAHRDYGWQPKTSQTKGPSPLANKELGNFFRNLWGPYAGWAQAV
                     LFSADLRQQNLSREPPAKRKKGSKKTEG"
ORIGIN      
        1 cagaatgggt agtttaggtc tgttatagcg agctggaggc tttcctaaag gaaagggaga
       61 ctcaaattca acagggacac aaattaaaat tacaccagat ccagaatcta ggacccaagg
      121 tgctacgttc tgggtgtgaa tggtcacttg tgtgtgaggc cgtaggacgt gggaaagtcg
      181 aattctgatt ggacgtaatg ggctggggac tgctatccaa atgttattca gttccagcct
      241 gtctagcagc atgagacatc gcaccctaac ctccagcccg gccctctggg cctctattcc
      301 gtgtccacgc tctgagctgc gtctggacct ggttttagct tctggacagt ccttccggtg
      361 tgaggctgct gagacaagac cccactgaat gccttttctc tttcatctgt tcttccaaca
      421 acaacattgc tcgcatcact ggcatggtgg aacggctgtg ccaggccttt ggacctcgac
      481 tcgttcagct tgatgatgtc acttatcatg gcttcccaaa ccttcatgcc ctggctggtc
      541 cagaagtaga gacccacctc aggaagttgg gcctggggta ccgtgcccgc tatgtatgtg
      601 ccagtgctaa agccatccta gaagagcaag gtgggccggc ttggctgcag cagcttcgag
      661 tggcctctta tgaagaggcc cacaaggccc tctgcaccct gcctggagtg ggcaccaagg
      721 tggctgactg catctgctta atggccctgg acaaacccca ggctgtgcct gtggacatcc
      781 atgtgtggca gattgcccat cgtgactacg gctggcagcc taagacatcg cagactaagg
      841 gcccgagccc tctggccaac aaagaactgg gaaacttttt ccggaatctg tggggacctt
      901 atgctggctg ggcccaagca gtgctgttca gtgctgacct tcgtcaacaa aacctgtctc
      961 gggagccacc agcaaagcgc aaaaagggat ctaagaagac agaaggctag gtagggccca
     1021 ggggacaaaa gatgtcactg atattttccc ctttgttctc catttctctc ccttgtcctc
     1081 acccaagtca gaaaggctta acattcctac ctccaaggca aacatcccaa atcaaagtca
     1141 ggttttacaa caggggacaa ggaagctatt tgagaaaatg gaactgtttt gttttatctt
     1201 ccctttatta caagaaggaa caataaaata gaaacatttg tatggaaaat gcagtgaaga
     1261 gtgagagggg agggaagaag tatggggtca gaaactcccc agttctgggg tgaggaggaa
     1321 gcaggctgcc tccaacccct cacggacgaa accctgactc cttgatgttc agtccatggc
     1381 cctagagctt gggggtggtg cagggggcag ttctgagcct ggctccacac agcagtctcg
     1441 acagcagcag ccagctgctg gccctgtgtg gaaggaaagg gcaagggcag ctgcagagcg
     1501 ggcgtcagct ccagccttgt gcttcttcac agaccaccta tgcccttcca caagaccctg
     1561 gttcttaccc ccagctgtgg gtgtcagcag ctctccgtgg ctagctgtct gtccctgtcc
     1621 ctcctggctg gtgcccagct gcagcttcct catgtgccga accacagcgg tagcattgaa
     1681 agcttgctgt ggaaagaggg aaggggactg ctgaaagggg gccttattaa gggcttaggg
     1741 tcggcaaagg gagtctcccc aagtcctccc cagactcagt caggtgctac taaactatat
     1801 ttagttatac atgcagcaca tgtataaaag catacaaagg aacataaaac tataattcat
     1861 gtaaacaaca tttatgtgtc tacatagctc tgagcacagt gcatggtcat tcattcatta
     1921 aatcctcaca tcctctgagt ca
//
