LOCUS       NM_001105927            1637 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus 2-oxoglutarate and iron-dependent oxygenase
            domain containing 2 (Ogfod2), mRNA.
ACCESSION   NM_001105927 XM_001079132 XM_213776
VERSION     NM_001105927.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1637)
  AUTHORS   Li,H., Gu,X., Dawson,V.L. and Dawson,T.M.
  TITLE     Identification of calcium- and nitric oxide-regulated genes by
            differential analysis of library expression (DAzLE)
  JOURNAL   Proc Natl Acad Sci U S A 101 (2), 647-652 (2004)
   PUBMED   14701905
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1, AI578257.1 and CD567922.1.
            
            On Mar 12, 2021 this sequence version replaced NM_001105927.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.50438.1,
                                           SRR26643295.45379.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840107,
                                           SAMN12840109 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-22                JAXUCZ010000012.1  38146609-38146630   c
            23-462              AI578257.1         1-440
            463-543             JAXUCZ010000012.1  38144670-38144750   c
            544-801             JAXUCZ010000012.1  38144234-38144491   c
            802-1345            JAXUCZ010000012.1  38143621-38144164   c
            1346-1551           CD567922.1         291-496
            1552-1637           JAXUCZ010000012.1  38143329-38143414   c
FEATURES             Location/Qualifiers
     source          1..1637
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q15"
     gene            1..1637
                     /gene="Ogfod2"
                     /gene_synonym="RGD1310594"
                     /note="2-oxoglutarate and iron-dependent oxygenase domain
                     containing 2"
                     /db_xref="GeneID:288657"
                     /db_xref="RGD:1310594"
     exon            1..144
                     /gene="Ogfod2"
                     /gene_synonym="RGD1310594"
                     /inference="alignment:Splign:2.1.0"
     CDS             16..1065
                     /gene="Ogfod2"
                     /gene_synonym="RGD1310594"
                     /codon_start=1
                     /product="2-oxoglutarate and iron-dependent oxygenase
                     domain-containing protein 2"
                     /protein_id="NP_001099397.1"
                     /db_xref="GeneID:288657"
                     /db_xref="RGD:1310594"
                     /translation="MATAAPRRFCRCACFCSQNLYVARYGLHLRFRDEQQLRRDYGPL
                     LRSRGCVTPRDFQQLLEELEQEVGRRRRLGQESAARKAVIASSYHPARPEVYSSLQDA
                     ALAPEFKAAAEYSGSPGADLEGLLQRLETVSEEKRIYRVPVFSAKFCQTLLEELEHFE
                     QSDMPKGRPNTMNNHGVLMHELGLDDPLVTPLRERFLLPLMALLYPDCGGGHLDSHRA
                     FVVKYALGQDLELGCHYDNAELTLNVALGKDFTGGALYFGGFFQAPEALTETLEVDHV
                     VGHGILHRGGQLHGARPLSTGERWNLVVWLRASAVRNSLCPMCCQKPDLVDDEGFGDG
                     FTREEPAMVDVCMLT"
     exon            145..201
                     /gene="Ogfod2"
                     /gene_synonym="RGD1310594"
                     /inference="alignment:Splign:2.1.0"
     exon            202..315
                     /gene="Ogfod2"
                     /gene_synonym="RGD1310594"
                     /inference="alignment:Splign:2.1.0"
     exon            316..415
                     /gene="Ogfod2"
                     /gene_synonym="RGD1310594"
                     /inference="alignment:Splign:2.1.0"
     exon            416..543
                     /gene="Ogfod2"
                     /gene_synonym="RGD1310594"
                     /inference="alignment:Splign:2.1.0"
     exon            544..801
                     /gene="Ogfod2"
                     /gene_synonym="RGD1310594"
                     /inference="alignment:Splign:2.1.0"
     exon            802..1637
                     /gene="Ogfod2"
                     /gene_synonym="RGD1310594"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgcggccgct tcaccatggc gacggccgcc ccgcggcgct tctgccgctg cgcctgcttc
       61 tgctcccaga acttgtatgt ggcgcgctac gggctgcatc ttcgcttcag ggacgagcag
      121 cagctgcgcc gtgactacgg cccgctcctg cgcagccgtg gctgtgtcac ccccagggac
      181 ttccagcaac tcttggagga gcttgagcag gaggtcgggc gtcgccgaag gctgggacag
      241 gaatcagctg ccaggaaggc tgtcatcgcc agctcttacc acccggcaag gcctgaggtc
      301 tacagctcac tgcaggatgc tgctctggcc cctgaattta aggctgcagc tgaatatagc
      361 gggtccccag gcgcagatct tgagggcctt ctccagcgcc tggagacagt gtcggaggag
      421 aagcgcattt atcgggtgcc agtgttctct gccaagttct gccagaccct gctggaggag
      481 ctggagcatt ttgagcagtc ggacatgccc aagggaaggc ccaacaccat gaacaaccac
      541 ggggtcctga tgcatgagtt aggcctagac gacccactgg tgacaccgct tcgggaacgc
      601 ttcctgctgc cgctgatggc cttgctgtac ccagactgcg gtgggggcca cctcgatagc
      661 caccgtgcct ttgtggtcaa gtatgcactg ggccaggacc tggagctggg ctgtcactac
      721 gataacgccg agctcaccct caatgtggct ctgggcaagg acttcacagg gggtgcccta
      781 tactttgggg gcttcttcca ggcacctgaa gccctgacgg agaccctgga agtggatcac
      841 gtggtaggcc atggtatcct gcaccgtggc ggccagctgc atggggcccg gcccctgagc
      901 acgggagagc gctggaacct tgtcgtgtgg ctccgagcat ctgccgttcg gaatagcctc
      961 tgtcccatgt gctgccagaa gccagacctg gtggatgatg agggtttcgg tgacggcttc
     1021 acccgtgagg agcctgccat ggtggatgta tgtatgttga cttgagcctg gttttcccgg
     1081 agttgtcggc gctgtggcag caaaaaactt gccatcttgg gcagggaggg cagaaataaa
     1141 ctctgtggcc acaccatcgc tcaggtcaga aggacacgca gacttctggg tcattctttg
     1201 gacggatgat ctgtagtaag gcagagctgc tgagagataa gccttgcttg agttaaagta
     1261 ctgagggtcc agggcagggc aggcccagga agagaagaag ccaggaaaag acatggtttt
     1321 catctaggtt ttcatctaat gacgtctggc ctcagcctca gccctgggga gctctgagtg
     1381 aggaggaagt cagtggctca gagatgggac tggatagcaa gggggctgga ggggggcggg
     1441 ggtgtctcag cagacatcta cctcagagag ggtggctccg ggaacttaag ttcactgctc
     1501 tgactatcag caatgctgga gagtggagga tgggggtcca gactttctag ctggcatgcc
     1561 cagctgtgca cctctggact atctagggcc ctggttgttg tgactgccca aggagttgat
     1621 gtttataaag cacttta
//
