LOCUS       XM_039091346            3493 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus odr-4 GPCR localization factor homolog
            (Odr4), transcript variant X1, mRNA.
ACCESSION   XM_039091346
VERSION     XM_039091346.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091346.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3493
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3493
                     /gene="Odr4"
                     /note="odr-4 GPCR localization factor homolog; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 27 ESTs, 3 long SRA reads, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 156 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:304863"
                     /db_xref="RGD:1307830"
     CDS             172..1515
                     /gene="Odr4"
                     /codon_start=1
                     /product="protein odr-4 homolog isoform X1"
                     /protein_id="XP_038947274.1"
                     /db_xref="GeneID:304863"
                     /db_xref="RGD:1307830"
                     /translation="MGRTYIVEETVGQYLSSINLQGKPFVSGLLIGQCSSQKDYVILA
                     TRTPPKEEQNDNLKHPKSKLDNLDEEWATEHANQVSRMLPGGLVVLGVFIITTLELAD
                     DFQNAMRRLIFSMEKSMSRKRLWNVTEDEVSERVTLHICSSTKKISCRTYDVHDPKSS
                     ARPADWKYQSRVSASWLSLDCTIHVNIHIPLSATSVTYTLEKNTKSGLTRWAKQIENG
                     VYLINGQVKGNDCDLLEGQKKNRGNTQAAAHSFDVRVLTQLLLNSDHRSTATVQICSG
                     SVNLRGNVRCRAYIHSNRPKVKDAVQAVKRDILNTVADRCEILFEDLLLNETPEKKNY
                     ELPQRVFVPLPGSTVMLCDYKFGDESAEEIRDHFSDMLDHEIQIEDVEIAEEVNTACM
                     PSCVNSEASLTNTNDEQPEQPNKTIGVKIQQNIGVIAALAVAAFAAGISFHYFSD"
ORIGIN      
        1 gtcgctttct gatgagatca ttggccgtgg cagtgggacc tgagtggcac ctggcctttg
       61 aaggtagcta cttgtaccct aactcgagtt cttttgctga cagaaggttc gagggactta
      121 tttgccacat gtgcacattc tgagaacaag ctgttgaatc ggctgtcaat aatgggaaga
      181 acctacattg tagaagagac tgttggccag tatctttcaa gcatcaacct ccagggaaaa
      241 ccttttgtct ctggtctttt gataggacag tgttcatcac aaaaggatta tgtgattctt
      301 gccactagaa caccacccaa agaggaacaa aatgacaacc tcaaacatcc gaaatctaag
      361 ttggataatt tggatgaaga atgggccaca gaacatgcta accaggtgtc cagaatgctc
      421 cctggaggac ttgtggttct tggagtattt attatcacaa ctttagaact agcagatgat
      481 tttcaaaatg ccatgcgcag actaatattt tctatggaaa aatctatgag tagaaaaaga
      541 ctatggaatg tcacagagga cgaggtctca gaacgagtga cacttcacat ttgctcttct
      601 acaaaaaaaa tatcttgtcg aacttacgat gtccacgatc caaagagttc agcaagacct
      661 gcagattgga agtatcagag tagagtgtct gcctcatggc tgtctctaga ctgtactatt
      721 cacgttaaca ttcacatccc actgtcggct acttctgtca cttacactct ggaaaaaaac
      781 acaaagagtg gacttacacg gtgggccaag caaatagaaa atggtgttta tctgattaat
      841 ggacaagtta aaggcaacga ttgtgaccta ttagaaggac agaaaaaaaa tagaggaaat
      901 acgcaagcag ctgctcattc ctttgatgtc cgagtgctaa cacagttgct cctgaattca
      961 gaccacagat ccacagccac agtccagatc tgcagcgggt ctgtcaacct tcggggaaat
     1021 gtgaggtgca gagcttatat ccatagcaac agacccaagg ttaaagatgc tgtgcaggca
     1081 gtgaagagag atattttgaa cacagttgct gatcgctgtg aaatactatt tgaggacctg
     1141 cttttgaatg aaactccaga aaaaaaaaat tatgaacttc ctcagcgagt ttttgtcccc
     1201 cttcctggat ctactgtaat gttgtgtgac tataaatttg gtgatgaatc agctgaagaa
     1261 atcagagacc acttttcaga tatgttagat catgagattc aaatagaaga cgtggaaatt
     1321 gcagaggaag taaacacagc ttgtatgcct tcctgtgtga atagtgaggc ttcactgacc
     1381 aacacaaatg atgaacagcc agagcaacca aacaaaacca taggagtgaa aattcagcaa
     1441 aacataggtg tgatcgcagc actagcagtt gcagcatttg ctgcaggcat ctccttccat
     1501 tacttcagtg actaggggaa ggcccaaaga gctccctgac catccagaaa tcactggtcc
     1561 acagctacga aagctaagat gtaaatgccc accccacaga agccggcacc gagctctgcc
     1621 tcgatcaggt cgtctgttag atgatgtgtt tctgacgacg cacatgaatc accagctgcc
     1681 ctgttagccc tgcttttact atctggtcag gctcccaaaa gtaaactgcg catctaagtg
     1741 gagttgcatg taacaaacca ctgttctgta ttttcagaag ggtcaaatgt gagctatttt
     1801 aagagctcag tgctattgaa ctagatcaca cattgatcag aatagtgaag cttcaggcag
     1861 tcagtagcaa ccatagcaga cgtatcatca gtagttttct ggtaagttca tctagaggac
     1921 ttttctaata tgtacccagt tgcagtatgt tatagacatt gattaaattg gaggccatga
     1981 atactattct aagcatacac atggaccatg gttttctttt ttctttcttt ttcttttttc
     2041 ttttttcttt ttttaataat tttatttttc ttgaatattt tatgtattta catttcaaat
     2101 attatccccc ttcctccttt tccataccct ctccccctac cccctgcttt tatgaggatg
     2161 ctcccattcc catctaccca ctccaacctc aacacctggc attaccctac aatggggaaa
     2221 caagctttca caggacctag ggcttttccg cccattgatg ctcgacaatg ccattctctg
     2281 ctatgtatgt ggctggagtc atgggtccct ccatgtgtct ctttggttgg tagtttagtc
     2341 cctaggagct cgggcggggg ggggggggtt tggttggttg gtattgttgt tcttcctatg
     2401 gtgttgcaaa ccccttcagc tccttcagcc ttttctctag ctcctccatt ggggttccct
     2461 tgttcagtcc aatggttagc tgcaagcatc tggcagaggc cagtagcagc actgaggtgt
     2521 actgtttgcc tccaaccaga aacaaagagg aatgtaaacc tgagatgcta tcctaattag
     2581 ggcagttact attcagcacc tctcccttgt agttctatgt agctcctggc agaataaact
     2641 agaaatattt ctaacttaga cccaagactc ccatcaatta tgaccaagca atattttttc
     2701 ctgattttat atcatgaggt acaaatgcag tgaaatgggg agagataaac tataggaaaa
     2761 aaattaaagt catttcctga ggtttacatc aacagtgtag agaataacgg tagagccata
     2821 gtgtggatga aagccaagta gtgttcctcg gaataacgag gacgctcttt aaaggaagag
     2881 aggaaactgc agattattta gtgggagtag actcagctga agagatcaga gaaatggaag
     2941 gtggagcagc aggaaggctg tagggaggga ggagtgacac agtctaggag caccctgagg
     3001 gagaatggaa gagaggcagc ccttggcaac gggtttctga cactcattag caaaacagac
     3061 ttagtgaaca aacaaacaag caaatccaca agtaaaccac aagtctgaaa caaggttcct
     3121 aaaaaagcca aagtggctat aaagatggtc aggtaagccg tcagtcacat gcacagtgca
     3181 ccgccagtag caacagtgta tccaggaagt ggtaaaacac cttcattgtt gtgaggggaa
     3241 ctgtgggaac tggaaactgg tgcaaggtga aactcaaaca aaccctcatt aaagaaactg
     3301 aagaaggatg gtctttgata agaaaaatta ctcaagaagc aagatttgga attgaagtgt
     3361 tcatgaacag acaaaatcaa tattgtaaat ttaaagtgtt atttgtataa agcaatcata
     3421 atgaagtatt taaagaaatt gtagaaattg taaacacatt taacactgaa taaatattgt
     3481 tatgcaacat taa
//
