LOCUS       XM_039104455            3489 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus outer dense fiber of sperm tails 2
            (Odf2), transcript variant X19, mRNA.
ACCESSION   XM_039104455
VERSION     XM_039104455.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039104455.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3489
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3489
                     /gene="Odf2"
                     /note="outer dense fiber of sperm tails 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 38 ESTs, 3 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:29479"
                     /db_xref="RGD:3229"
     CDS             160..2001
                     /gene="Odf2"
                     /codon_start=1
                     /product="outer dense fiber protein 2 isoform X17"
                     /protein_id="XP_038960383.1"
                     /db_xref="GeneID:29479"
                     /db_xref="RGD:3229"
                     /translation="MTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKELCL
                     KVPECARQHRPGRERQEDCQDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVE
                     ELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQH
                     KAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVA
                     EALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVER
                     LHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVM
                     KTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAK
                     LAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVD
                     ELERKLEATSTQNVEFLQVIAKREEAIHQAQLRLEEKTRECGSLARQLESAIEDARRQ
                     VEQTKEQALSKERAAQSKILDLETQLSRTKTELGQLRRTRDDVDRRYQSRLQDLKDRL
                     EQSESTNRSMQNYVQFLKSSYANVFGDGPYTSSYLTSSPIRSRSPPA"
ORIGIN      
        1 tctaggctgg gggagggcac acctaactgc tcagtcccaa cccccccact ctctcacttc
       61 ctgggccttg gtcccttgaa gatgacctct gttgatcagg gcatctaagg agaccaaatc
      121 atgggccact tgggatcaca gtgagtcaag gagaaacaga tgacttgcac cgacatcaac
      181 accttaacga ggcagaagga acttctcctg cagaagctga gcacctttga agagaccaac
      241 cgcaccctcc gagatctgtt gagggagcag cactgcaaag agctgtgcct gaaagttcct
      301 gaatgtgcga ggcagcacag gcctgggagg gagaggcagg aggattgtca ggattccgag
      361 agactaatgg agcaacaagg tgcattactg aaacgtctgg cagaggccga ctcagagaaa
      421 gcgcgcctgc tgttactact gcaagacaag gacaaggaag tggaagaact cctccaggag
      481 atacaatgtg agaaggctca agcaaagaca gcgtctgagc tctccaagtc catggagtcc
      541 atgcgggggc atttgcaggc acagcttcgc tgcaaagagg ctgagaacag ccgcctgtgc
      601 atgcagatca agaatttaga gcgcagtggg aaccagcaca aggcggaagt agaggccatc
      661 atggagcagc taaaggaact gaagcaaaag ggagaccgag acaaagagac cctgaagaag
      721 gccatccgag cccagaagga gcgagctgag aagagtgagg agtatgccga gcagctacat
      781 gtgcagctgg ccgacaagga cctttatgtt gctgaagctt tatctactct ggagtcatgg
      841 aggagccgtt acaaccaagt tgtgaaagac aaaggagacc ttgagttgga gatcattgtc
      901 ctaaatgacc gggtgacaga tcttgtaaac caacaacaga gcttggagga gaagatgcgg
      961 gaagaccggg acagcttggt agagagactg caccggcaaa ctgctgagta ttctgccttc
     1021 aagctagaga acgagaggct caaggctagc tttgccccta tggaggacaa gctcaatcag
     1081 gctcacttgg aggtccagca actgaaggca tcagtgaaga actacgaggg gatgatcgac
     1141 aactacaaga gccaggtgat gaaaacaaga ttggaggctg acgaagtggc tgcgcagcta
     1201 gagcgctgcg acaaagagaa caagatgctt aaagacgaga tgaacaaaga aatcgaggcg
     1261 gcccgtcggc agttccagtc acagctggct gacctacaac agctgcctga catcctcaag
     1321 atcacggagg ccaagctggc tgagtgtcaa gaccagctgc agggctacga gaggaagaac
     1381 atcgacctca cagccatcat ttcagacctg cgcagccgga tcgaacatca gggggacaag
     1441 ctggagttgg cgagagagaa acatcaggct tcccagaagg aaaataaaca actgagtcag
     1501 aaggtggatg aactggagag gaaactggag gccaccagca cccagaatgt cgagttccta
     1561 caggtgattg ccaagaggga ggaggcaatc caccaggctc agctgcggct ggaggagaaa
     1621 acgagggagt gtgggtcctt ggcgaggcag ttggagagtg ccattgaaga tgccaggcga
     1681 caggtggagc aaaccaagga acaggcgctc tccaaggaac gagcagccca gagcaaaatc
     1741 ctggaccttg agacccagct gagtaggacc aagacagaac ttggccagct acgccggact
     1801 cgtgatgatg tggatcgaag ataccagagc cgtctgcagg atctgaaaga tcgcctggag
     1861 cagtctgaaa gcaccaaccg cagcatgcag aattacgtcc aattcctcaa gtcctcctat
     1921 gcaaatgtgt ttggggatgg gccctataca tcctcctacc tgaccagctc acccatccgc
     1981 tctcggtctc ctcctgcctg aggccaccta tccagggtct gaagcccttg caggatgcca
     2041 gacaactgtg gcgttaccaa accatagcta gcaagcccac tgggtctcag atgcgatcag
     2101 gggtctgttc ctcaactaat gccagcaaag accctagagc agccagggat gaatcaggag
     2161 ggctctggtt ctctctcctg atctgggaac ctggtggaat tttctaatga tcttcacagc
     2221 cttatatttg ctatattagg tactagattt ttaaatccct gtgactagag tcttcttcct
     2281 ttcctcaggg aatgtttgta cagacttcct gcagagacgc ccttctcttc tgaagcgtct
     2341 ctgtcttggg tttctttgag ctgaagttgc aggagtcctt ctctgactct gaaggcctac
     2401 attgcttttt ctttcctttt tatttattta ttttttattt ttaataaaaa tagaacttta
     2461 tttgtattaa gaaatagtga ggggttgggg atttagctca gtagtagagc gcttgcctag
     2521 caagcgcaag gccctgggtt tggtccccag ctccgaaaaa aagaaaagga aaaaaaaata
     2581 gtgaaaacat gtaaattagt aactaagcct gtgcttttat cagcataaaa acatgacaga
     2641 gagagagatg caacgttcgt tagagctcat ggaggtaaga ggctcatagc tcctagctcc
     2701 cgtggaacct gtagctacaa atgtcatgaa aatatgttgt tgtaataagt ccctcattac
     2761 atagcaactg gcatgtcaga gctacagcag gtgtgttcac agtgaaatgt ttgaacacag
     2821 accaaactgt gtggcacgtg tgcttgtaac cgtatgttct ggtttcacag ttctggtaac
     2881 actaactgac cacctcttac tgcaagtaaa gtatagagca gtgcaggaat ccgcccatca
     2941 tcccctcaca gaggccgtgg tgatctgtgt tgttccagca ttgatggata tgctactgaa
     3001 ggggaatctg cttttctctc cttggtgagc agggcaggaa gcagtgtttt ccacagtgcc
     3061 aatggaaacc tcccatgtct gccttttcta taggccactg gtcctcaagc tcgtcacaga
     3121 cgctcatggc catgcagcct gacattcaaa ttcctatctc attatttatc ctttctttgc
     3181 atctctggga ttcattgatt tttgacattt ttgtgtggtt ttacaggaaa taaagttttt
     3241 atagtcagtt atgtcagact cctctgattt cccttatcac cctctcctta ttttaaaaat
     3301 gatgaagctg agggaggtga cacacacacc tgtcataatc acttgggagc tggaggcaaa
     3361 aggatcagtt cagtcagtgt tagccacagc tacagagtgg ttgaggccag cctgggctac
     3421 atgagagcat gtctttattc agacaatcat ttttaaatga ctgaataaag tcagagttgg
     3481 agaacatta
//
