LOCUS       XM_017591535            4220 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus outer dense fiber of sperm tails 2
            (Odf2), transcript variant X14, mRNA.
ACCESSION   XM_017591535
VERSION     XM_017591535.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017591535.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4220
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4220
                     /gene="Odf2"
                     /note="outer dense fiber of sperm tails 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 45 ESTs, 6 long SRA reads, 7 Proteins, and
                     99% coverage of the annotated genomic feature by RNAseq
                     alignments, including 238 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:29479"
                     /db_xref="RGD:3229"
     CDS             255..2732
                     /gene="Odf2"
                     /codon_start=1
                     /product="outer dense fiber protein 2 isoform X12"
                     /protein_id="XP_017447024.1"
                     /db_xref="GeneID:29479"
                     /db_xref="RGD:3229"
                     /translation="MKDRSSTPPLHVHVDENTPVHVHIKKLPKPSAASSQKSHKRGMK
                     GDTVNVRRSVRVKTKVPWMPPGKSSARHVGCKWENPPHCLEITPPSSEKLVSVMRLSD
                     LSTEDDDSGHCKMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEV
                     AHELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAK
                     QVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKE
                     DSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELS
                     KSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDR
                     DKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDK
                     GDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKA
                     SFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKEN
                     KMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTA
                     IISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQNVEFLQVI
                     AKREEAIHQAQLRLEEKTRECGSLARQLESAIEDARRQVEQTKEQALSKERAAQSKIL
                     DLETQLSRTKTELGQLRRTRDDVDRRYQSRLQDLKDRLEQSESTNRSMQNYVQFLKSS
                     YANVFGDGPYTSSYLTSSPIRSRSPPA"
ORIGIN      
        1 aggagccgcc gcgggagccg gactgcatcc gccgcggcgt ctccatggca cgaccctggc
       61 ctccgacttc aacgacttca taaggagacg gttctgggcg cagccgtgcc gctcttggtt
      121 tccatcgtgt gggaagaacg gagtaacgag tctcacacag aaaaaagtct tgagaacacc
      181 ttgtggcgca cccagtgtaa ctgtgacgat cgatcttttt tgtgttgccc tcccctgcct
      241 gccagaagtg aaccatgaag gaccgatctt caactccccc cttacatgtt catgtggatg
      301 agaacactcc tgtccacgtc cacataaaaa aactcccgaa accatcagca gccagcagcc
      361 agaaatctca taagcgcgga atgaaagggg acaccgtgaa tgtacggcgg agtgtccggg
      421 tgaaaaccaa ggtaccttgg atgccccctg gaaaatcatc tgcccggcat gtgggatgca
      481 agtgggagaa tccacctcat tgcctggaga tcacaccacc atcttcagaa aagctggtct
      541 cggtgatgcg attgagtgac ctttctacag aagacgacga ttctggtcac tgtaagatga
      601 accgttacga taagaagatt gacagtctaa tgaacgcggt cggttgtctc aaatctgagg
      661 tcaagatgca gaaaggtgaa cgccaaatgg ccaaaaggtt cctggaggag aggaaggaag
      721 aactggagga ggtagcacat gagcttgcag agacggagca tgagaacaca gtgctcagac
      781 acaacatcga gcgcatcaag gaggagaagg acttcaccat gcttcaaaag aaacacctcc
      841 agcaggagaa ggaatgcctc atgtccaaac tggtggaggc tgaaatggat ggggcggctg
      901 ctgccaaaca agtcatggcc ttgaaggata ccatcgggaa gctgaaaacc gagaaacaga
      961 tgacttgcac cgacatcaac accttaacga ggcagaagga acttctcctg cagaagctga
     1021 gcacctttga agagaccaac cgcaccctcc gagatctgtt gagggagcag cactgcaaag
     1081 aggattccga gagactaatg gagcaacaag gtgcattact gaaacgtctg gcagaggccg
     1141 actcagagaa agcgcgcctg ctgttactac tgcaagacaa ggacaaggaa gtggaagaac
     1201 tcctccagga gatacaatgt gagaaggctc aagcaaagac agcgtctgag ctctccaagt
     1261 ccatggagtc catgcggggg catttgcagg cacagcttcg ctgcaaagag gctgagaaca
     1321 gccgcctgtg catgcagatc aagaatttag agcgcagtgg gaaccagcac aaggcggaag
     1381 tagaggccat catggagcag ctaaaggaac tgaagcaaaa gggagaccga gacaaagaga
     1441 ccctgaagaa ggccatccga gcccagaagg agcgagctga gaagagtgag gagtatgccg
     1501 agcagctaca tgtgcagctg gccgacaagg acctttatgt tgctgaagct ttatctactc
     1561 tggagtcatg gaggagccgt tacaaccaag ttgtgaaaga caaaggagac cttgagttgg
     1621 agatcattgt cctaaatgac cgggtgacag atcttgtaaa ccaacaacag agcttggagg
     1681 agaagatgcg ggaagaccgg gacagcttgg tagagagact gcaccggcaa actgctgagt
     1741 attctgcctt caagctagag aacgagaggc tcaaggctag ctttgcccct atggaggaca
     1801 agctcaatca ggctcacttg gaggtccagc aactgaaggc atcagtgaag aactacgagg
     1861 ggatgatcga caactacaag agccaggtga tgaaaacaag attggaggct gacgaagtgg
     1921 ctgcgcagct agagcgctgc gacaaagaga acaagatgct taaagacgag atgaacaaag
     1981 aaatcgaggc ggcccgtcgg cagttccagt cacagctggc tgacctacaa cagctgcctg
     2041 acatcctcaa gatcacggag gccaagctgg ctgagtgtca agaccagctg cagggctacg
     2101 agaggaagaa catcgacctc acagccatca tttcagacct gcgcagccgg atcgaacatc
     2161 agggggacaa gctggagttg gcgagagaga aacatcaggc ttcccagaag gaaaataaac
     2221 aactgagtca gaaggtggat gaactggaga ggaaactgga ggccaccagc acccagaatg
     2281 tcgagttcct acaggtgatt gccaagaggg aggaggcaat ccaccaggct cagctgcggc
     2341 tggaggagaa aacgagggag tgtgggtcct tggcgaggca gttggagagt gccattgaag
     2401 atgccaggcg acaggtggag caaaccaagg aacaggcgct ctccaaggaa cgagcagccc
     2461 agagcaaaat cctggacctt gagacccagc tgagtaggac caagacagaa cttggccagc
     2521 tacgccggac tcgtgatgat gtggatcgaa gataccagag ccgtctgcag gatctgaaag
     2581 atcgcctgga gcagtctgaa agcaccaacc gcagcatgca gaattacgtc caattcctca
     2641 agtcctccta tgcaaatgtg tttggggatg ggccctatac atcctcctac ctgaccagct
     2701 cacccatccg ctctcggtct cctcctgcct gaggccacct atccagggtc tgaagccctt
     2761 gcaggatgcc agacaactgt ggcgttacca aaccatagct agcaagccca ctgggtctca
     2821 gatgcgatca ggggtctgtt cctcaactaa tgccagcaaa gaccctagag cagccaggga
     2881 tgaatcagga gggctctggt tctctctcct gatctgggaa cctggtggaa ttttctaatg
     2941 atcttcacag ccttatattt gctatattag gtactagatt tttaaatccc tgtgactaga
     3001 gtcttcttcc tttcctcagg gaatgtttgt acagacttcc tgcagagacg cccttctctt
     3061 ctgaagcgtc tctgtcttgg gtttctttga gctgaagttg caggagtcct tctctgactc
     3121 tgaaggccta cattgctttt tctttccttt ttatttattt attttttatt tttaataaaa
     3181 atagaacttt atttgtatta agaaatagtg aggggttggg gatttagctc agtagtagag
     3241 cgcttgccta gcaagcgcaa ggccctgggt ttggtcccca gctccgaaaa aaagaaaagg
     3301 aaaaaaaaat agtgaaaaca tgtaaattag taactaagcc tgtgctttta tcagcataaa
     3361 aacatgacag agagagagat gcaacgttcg ttagagctca tggaggtaag aggctcatag
     3421 ctcctagctc ccgtggaacc tgtagctaca aatgtcatga aaatatgttg ttgtaataag
     3481 tccctcatta catagcaact ggcatgtcag agctacagca ggtgtgttca cagtgaaatg
     3541 tttgaacaca gaccaaactg tgtggcacgt gtgcttgtaa ccgtatgttc tggtttcaca
     3601 gttctggtaa cactaactga ccacctctta ctgcaagtaa agtatagagc agtgcaggaa
     3661 tccgcccatc atcccctcac agaggccgtg gtgatctgtg ttgttccagc attgatggat
     3721 atgctactga aggggaatct gcttttctct ccttggtgag cagggcagga agcagtgttt
     3781 tccacagtgc caatggaaac ctcccatgtc tgccttttct ataggccact ggtcctcaag
     3841 ctcgtcacag acgctcatgg ccatgcagcc tgacattcaa attcctatct cattatttat
     3901 cctttctttg catctctggg attcattgat ttttgacatt tttgtgtggt tttacaggaa
     3961 ataaagtttt tatagtcagt tatgtcagac tcctctgatt tcccttatca ccctctcctt
     4021 attttaaaaa tgatgaagct gagggaggtg acacacacac ctgtcataat cacttgggag
     4081 ctggaggcaa aaggatcagt tcagtcagtg ttagccacag ctacagagtg gttgaggcca
     4141 gcctgggcta catgagagca tgtctttatt cagacaatca tttttaaatg actgaataaa
     4201 gtcagagttg gagaacatta
//
