LOCUS       XM_017591534            4325 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus outer dense fiber of sperm tails 2
            (Odf2), transcript variant X13, mRNA.
ACCESSION   XM_017591534
VERSION     XM_017591534.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017591534.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4325
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4325
                     /gene="Odf2"
                     /note="outer dense fiber of sperm tails 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 41 ESTs, 4 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 10 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:29479"
                     /db_xref="RGD:3229"
     CDS             345..2837
                     /gene="Odf2"
                     /codon_start=1
                     /product="outer dense fiber protein 2 isoform X11"
                     /protein_id="XP_017447023.1"
                     /db_xref="GeneID:29479"
                     /db_xref="RGD:3229"
                     /translation="MSASSSGGSPRFPSCGKNGVTSLTQKKVLRTPCGAPSVTVTKSH
                     KRGMKGDTVNVRRSVRVKTKVPWMPPGKSSARHVGCKWENPPHCLEITPPSSEKLVSV
                     MRLSDLSTEDDDSGHCKMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKE
                     ELEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDG
                     AAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLRE
                     QHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKT
                     ASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELK
                     QKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQ
                     VVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLEN
                     ERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLER
                     CDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKN
                     IDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATSTQNVE
                     FLQVIAKREEAIHQAQLRLEEKTRECGSLARQLESAIEDARRQVEQTKEQALSKERAA
                     QSKILDLETQLSRTKTELGQLRRTRDDVDRRYQSRLQDLKDRLEQSESTNRSMQNYVQ
                     FLKSSYANVFGDGPYTSSYLTSSPIRSRSPPA"
ORIGIN      
        1 cccttcctcc tcccgctaac gggcgggccg gccgcctccg tcctctccgg gccatcggca
       61 gcgctctttc cctcctctgc tgccctcggg cagggctgcg cccttctatg ggcagaaccc
      121 cgttccctct tgcccgctgg acagttgctg tgcgacttgg acagtagagg agcgcctccc
      181 aagttttcat ccaactgcca cccccaaagc ttccaccctc ctcccctcag agagaggacg
      241 tttgatgccc ggcccctgag attctcattg gcaagcccct ctgggtcccc ctgagcagag
      301 cctgccgacc caattgccca actttgcggc tttgatgctt agccatgtct gcctcatcct
      361 caggcggctc ccccaggttt ccatcgtgtg ggaagaacgg agtaacgagt ctcacacaga
      421 aaaaagtctt gagaacacct tgtggcgcac ccagtgtaac tgtgacgaaa tctcataagc
      481 gcggaatgaa aggggacacc gtgaatgtac ggcggagtgt ccgggtgaaa accaaggtac
      541 cttggatgcc ccctggaaaa tcatctgccc ggcatgtggg atgcaagtgg gagaatccac
      601 ctcattgcct ggagatcaca ccaccatctt cagaaaagct ggtctcggtg atgcgattga
      661 gtgacctttc tacagaagac gacgattctg gtcactgtaa gatgaaccgt tacgataaga
      721 agattgacag tctaatgaac gcggtcggtt gtctcaaatc tgaggtcaag atgcagaaag
      781 gtgaacgcca aatggccaaa aggttcctgg aggagaggaa ggaagaactg gaggaggtag
      841 cacatgagct tgcagagacg gagcatgaga acacagtgct cagacacaac atcgagcgca
      901 tcaaggagga gaaggacttc accatgcttc aaaagaaaca cctccagcag gagaaggaat
      961 gcctcatgtc caaactggtg gaggctgaaa tggatggggc ggctgctgcc aaacaagtca
     1021 tggccttgaa ggataccatc gggaagctga aaaccgagaa acagatgact tgcaccgaca
     1081 tcaacacctt aacgaggcag aaggaacttc tcctgcagaa gctgagcacc tttgaagaga
     1141 ccaaccgcac cctccgagat ctgttgaggg agcagcactg caaagaggat tccgagagac
     1201 taatggagca acaaggtgca ttactgaaac gtctggcaga ggccgactca gagaaagcgc
     1261 gcctgctgtt actactgcaa gacaaggaca aggaagtgga agaactcctc caggagatac
     1321 aatgtgagaa ggctcaagca aagacagcgt ctgagctctc caagtccatg gagtccatgc
     1381 gggggcattt gcaggcacag cttcgctgca aagaggctga gaacagccgc ctgtgcatgc
     1441 agatcaagaa tttagagcgc agtgggaacc agcacaaggc ggaagtagag gccatcatgg
     1501 agcagctaaa ggaactgaag caaaagggag accgagacaa agagaccctg aagaaggcca
     1561 tccgagccca gaaggagcga gctgagaaga gtgaggagta tgccgagcag ctacatgtgc
     1621 agctggccga caaggacctt tatgttgctg aagctttatc tactctggag tcatggagga
     1681 gccgttacaa ccaagttgtg aaagacaaag gagaccttga gttggagatc attgtcctaa
     1741 atgaccgggt gacagatctt gtaaaccaac aacagagctt ggaggagaag atgcgggaag
     1801 accgggacag cttggtagag agactgcacc ggcaaactgc tgagtattct gccttcaagc
     1861 tagagaacga gaggctcaag gctagctttg cccctatgga ggacaagctc aatcaggctc
     1921 acttggaggt ccagcaactg aaggcatcag tgaagaacta cgaggggatg atcgacaact
     1981 acaagagcca ggtgatgaaa acaagattgg aggctgacga agtggctgcg cagctagagc
     2041 gctgcgacaa agagaacaag atgcttaaag acgagatgaa caaagaaatc gaggcggccc
     2101 gtcggcagtt ccagtcacag ctggctgacc tacaacagct gcctgacatc ctcaagatca
     2161 cggaggccaa gctggctgag tgtcaagacc agctgcaggg ctacgagagg aagaacatcg
     2221 acctcacagc catcatttca gacctgcgca gccggatcga acatcagggg gacaagctgg
     2281 agttggcgag agagaaacat caggcttccc agaaggaaaa taaacaactg agtcagaagg
     2341 tggatgaact ggagaggaaa ctggaggcca ccagcaccca gaatgtcgag ttcctacagg
     2401 tgattgccaa gagggaggag gcaatccacc aggctcagct gcggctggag gagaaaacga
     2461 gggagtgtgg gtccttggcg aggcagttgg agagtgccat tgaagatgcc aggcgacagg
     2521 tggagcaaac caaggaacag gcgctctcca aggaacgagc agcccagagc aaaatcctgg
     2581 accttgagac ccagctgagt aggaccaaga cagaacttgg ccagctacgc cggactcgtg
     2641 atgatgtgga tcgaagatac cagagccgtc tgcaggatct gaaagatcgc ctggagcagt
     2701 ctgaaagcac caaccgcagc atgcagaatt acgtccaatt cctcaagtcc tcctatgcaa
     2761 atgtgtttgg ggatgggccc tatacatcct cctacctgac cagctcaccc atccgctctc
     2821 ggtctcctcc tgcctgaggc cacctatcca gggtctgaag cccttgcagg atgccagaca
     2881 actgtggcgt taccaaacca tagctagcaa gcccactggg tctcagatgc gatcaggggt
     2941 ctgttcctca actaatgcca gcaaagaccc tagagcagcc agggatgaat caggagggct
     3001 ctggttctct ctcctgatct gggaacctgg tggaattttc taatgatctt cacagcctta
     3061 tatttgctat attaggtact agatttttaa atccctgtga ctagagtctt cttcctttcc
     3121 tcagggaatg tttgtacaga cttcctgcag agacgccctt ctcttctgaa gcgtctctgt
     3181 cttgggtttc tttgagctga agttgcagga gtccttctct gactctgaag gcctacattg
     3241 ctttttcttt cctttttatt tatttatttt ttatttttaa taaaaataga actttatttg
     3301 tattaagaaa tagtgagggg ttggggattt agctcagtag tagagcgctt gcctagcaag
     3361 cgcaaggccc tgggtttggt ccccagctcc gaaaaaaaga aaaggaaaaa aaaatagtga
     3421 aaacatgtaa attagtaact aagcctgtgc ttttatcagc ataaaaacat gacagagaga
     3481 gagatgcaac gttcgttaga gctcatggag gtaagaggct catagctcct agctcccgtg
     3541 gaacctgtag ctacaaatgt catgaaaata tgttgttgta ataagtccct cattacatag
     3601 caactggcat gtcagagcta cagcaggtgt gttcacagtg aaatgtttga acacagacca
     3661 aactgtgtgg cacgtgtgct tgtaaccgta tgttctggtt tcacagttct ggtaacacta
     3721 actgaccacc tcttactgca agtaaagtat agagcagtgc aggaatccgc ccatcatccc
     3781 ctcacagagg ccgtggtgat ctgtgttgtt ccagcattga tggatatgct actgaagggg
     3841 aatctgcttt tctctccttg gtgagcaggg caggaagcag tgttttccac agtgccaatg
     3901 gaaacctccc atgtctgcct tttctatagg ccactggtcc tcaagctcgt cacagacgct
     3961 catggccatg cagcctgaca ttcaaattcc tatctcatta tttatccttt ctttgcatct
     4021 ctgggattca ttgatttttg acatttttgt gtggttttac aggaaataaa gtttttatag
     4081 tcagttatgt cagactcctc tgatttccct tatcaccctc tccttatttt aaaaatgatg
     4141 aagctgaggg aggtgacaca cacacctgtc ataatcactt gggagctgga ggcaaaagga
     4201 tcagttcagt cagtgttagc cacagctaca gagtggttga ggccagcctg ggctacatga
     4261 gagcatgtct ttattcagac aatcattttt aaatgactga ataaagtcag agttggagaa
     4321 catta
//
