LOCUS       XM_017591533            4331 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus outer dense fiber of sperm tails 2
            (Odf2), transcript variant X12, mRNA.
ACCESSION   XM_017591533
VERSION     XM_017591533.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017591533.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4331
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4331
                     /gene="Odf2"
                     /note="outer dense fiber of sperm tails 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 41 ESTs, 4 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 4 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:29479"
                     /db_xref="RGD:3229"
     CDS             339..2843
                     /gene="Odf2"
                     /codon_start=1
                     /product="outer dense fiber protein 2 isoform X10"
                     /protein_id="XP_017447022.1"
                     /db_xref="GeneID:29479"
                     /db_xref="RGD:3229"
                     /translation="MSASSSGGSPRFPSCGKNGVTSLTQKKVLRTPCGAPSVTVTKSH
                     KRGMKGDTVNVRRSVRVKTKNPPHCLEITPPSSEKLVSVMRLSDLSTEDDDSGHCKMN
                     RYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVL
                     RHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKT
                     EKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKELCLKVPECARQHRP
                     GRERQEDCQDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKA
                     QAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQL
                     KELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRS
                     RYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAF
                     KLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAA
                     QLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGY
                     ERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKLEATST
                     QNVEFLQVIAKREEAIHQAQLRLEEKTRECGSLARQLESAIEDARRQVEQTKEQALSK
                     ERAAQSKILDLETQLSRTKTELGQLRRTRDDVDRRYQSRLQDLKDRLEQSESTNRSMQ
                     NYVQFLKSSYANVFGDGPYTSSYLTSSPIRSRSPPA"
ORIGIN      
        1 ccttcctcct cccgctaacg ggcgggccgg ccgcctccgt cctctccggg ccatcggcag
       61 cgctctttcc ctcctctgct gccctcgggc agggctgcgc ccttctatgg gcagaacccc
      121 gttccctctt gcccgctgtt gctgtgcgac ttggacagta gaggagcgcc tcccaagttt
      181 tcatccaact gccaccccca aagcttccac cctcctcccc tcagagagag gacgtttgat
      241 gcccggcccc tgagattctc attggcaagc ccctctgggt ccccctgagc agagcctgcc
      301 gacccaattg cccaactttg cggctttgat gcttagccat gtctgcctca tcctcaggcg
      361 gctcccccag gtttccatcg tgtgggaaga acggagtaac gagtctcaca cagaaaaaag
      421 tcttgagaac accttgtggc gcacccagtg taactgtgac gaaatctcat aagcgcggaa
      481 tgaaagggga caccgtgaat gtacggcgga gtgtccgggt gaaaaccaag aatccacctc
      541 attgcctgga gatcacacca ccatcttcag aaaagctggt ctcggtgatg cgattgagtg
      601 acctttctac agaagacgac gattctggtc actgtaagat gaaccgttac gataagaaga
      661 ttgacagtct aatgaacgcg gtcggttgtc tcaaatctga ggtcaagatg cagaaaggtg
      721 aacgccaaat ggccaaaagg ttcctggagg agaggaagga agaactggag gaggtagcac
      781 atgagcttgc agagacggag catgagaaca cagtgctcag acacaacatc gagcgcatca
      841 aggaggagaa ggacttcacc atgcttcaaa agaaacacct ccagcaggag aaggaatgcc
      901 tcatgtccaa actggtggag gctgaaatgg atggggcggc tgctgccaaa caagtcatgg
      961 ccttgaagga taccatcggg aagctgaaaa ccgagaaaca gatgacttgc accgacatca
     1021 acaccttaac gaggcagaag gaacttctcc tgcagaagct gagcaccttt gaagagacca
     1081 accgcaccct ccgagatctg ttgagggagc agcactgcaa agagctgtgc ctgaaagttc
     1141 ctgaatgtgc gaggcagcac aggcctggga gggagaggca ggaggattgt caggattccg
     1201 agagactaat ggagcaacaa ggtgcattac tgaaacgtct ggcagaggcc gactcagaga
     1261 aagcgcgcct gctgttacta ctgcaagaca aggacaagga agtggaagaa ctcctccagg
     1321 agatacaatg tgagaaggct caagcaaaga cagcgtctga gctctccaag tccatggagt
     1381 ccatgcgggg gcatttgcag gcacagcttc gctgcaaaga ggctgagaac agccgcctgt
     1441 gcatgcagat caagaattta gagcgcagtg ggaaccagca caaggcggaa gtagaggcca
     1501 tcatggagca gctaaaggaa ctgaagcaaa agggagaccg agacaaagag accctgaaga
     1561 aggccatccg agcccagaag gagcgagctg agaagagtga ggagtatgcc gagcagctac
     1621 atgtgcagct ggccgacaag gacctttatg ttgctgaagc tttatctact ctggagtcat
     1681 ggaggagccg ttacaaccaa gttgtgaaag acaaaggaga ccttgagttg gagatcattg
     1741 tcctaaatga ccgggtgaca gatcttgtaa accaacaaca gagcttggag gagaagatgc
     1801 gggaagaccg ggacagcttg gtagagagac tgcaccggca aactgctgag tattctgcct
     1861 tcaagctaga gaacgagagg ctcaaggcta gctttgcccc tatggaggac aagctcaatc
     1921 aggctcactt ggaggtccag caactgaagg catcagtgaa gaactacgag gggatgatcg
     1981 acaactacaa gagccaggtg atgaaaacaa gattggaggc tgacgaagtg gctgcgcagc
     2041 tagagcgctg cgacaaagag aacaagatgc ttaaagacga gatgaacaaa gaaatcgagg
     2101 cggcccgtcg gcagttccag tcacagctgg ctgacctaca acagctgcct gacatcctca
     2161 agatcacgga ggccaagctg gctgagtgtc aagaccagct gcagggctac gagaggaaga
     2221 acatcgacct cacagccatc atttcagacc tgcgcagccg gatcgaacat cagggggaca
     2281 agctggagtt ggcgagagag aaacatcagg cttcccagaa ggaaaataaa caactgagtc
     2341 agaaggtgga tgaactggag aggaaactgg aggccaccag cacccagaat gtcgagttcc
     2401 tacaggtgat tgccaagagg gaggaggcaa tccaccaggc tcagctgcgg ctggaggaga
     2461 aaacgaggga gtgtgggtcc ttggcgaggc agttggagag tgccattgaa gatgccaggc
     2521 gacaggtgga gcaaaccaag gaacaggcgc tctccaagga acgagcagcc cagagcaaaa
     2581 tcctggacct tgagacccag ctgagtagga ccaagacaga acttggccag ctacgccgga
     2641 ctcgtgatga tgtggatcga agataccaga gccgtctgca ggatctgaaa gatcgcctgg
     2701 agcagtctga aagcaccaac cgcagcatgc agaattacgt ccaattcctc aagtcctcct
     2761 atgcaaatgt gtttggggat gggccctata catcctccta cctgaccagc tcacccatcc
     2821 gctctcggtc tcctcctgcc tgaggccacc tatccagggt ctgaagccct tgcaggatgc
     2881 cagacaactg tggcgttacc aaaccatagc tagcaagccc actgggtctc agatgcgatc
     2941 aggggtctgt tcctcaacta atgccagcaa agaccctaga gcagccaggg atgaatcagg
     3001 agggctctgg ttctctctcc tgatctggga acctggtgga attttctaat gatcttcaca
     3061 gccttatatt tgctatatta ggtactagat ttttaaatcc ctgtgactag agtcttcttc
     3121 ctttcctcag ggaatgtttg tacagacttc ctgcagagac gcccttctct tctgaagcgt
     3181 ctctgtcttg ggtttctttg agctgaagtt gcaggagtcc ttctctgact ctgaaggcct
     3241 acattgcttt ttctttcctt tttatttatt tattttttat ttttaataaa aatagaactt
     3301 tatttgtatt aagaaatagt gaggggttgg ggatttagct cagtagtaga gcgcttgcct
     3361 agcaagcgca aggccctggg tttggtcccc agctccgaaa aaaagaaaag gaaaaaaaaa
     3421 tagtgaaaac atgtaaatta gtaactaagc ctgtgctttt atcagcataa aaacatgaca
     3481 gagagagaga tgcaacgttc gttagagctc atggaggtaa gaggctcata gctcctagct
     3541 cccgtggaac ctgtagctac aaatgtcatg aaaatatgtt gttgtaataa gtccctcatt
     3601 acatagcaac tggcatgtca gagctacagc aggtgtgttc acagtgaaat gtttgaacac
     3661 agaccaaact gtgtggcacg tgtgcttgta accgtatgtt ctggtttcac agttctggta
     3721 acactaactg accacctctt actgcaagta aagtatagag cagtgcagga atccgcccat
     3781 catcccctca cagaggccgt ggtgatctgt gttgttccag cattgatgga tatgctactg
     3841 aaggggaatc tgcttttctc tccttggtga gcagggcagg aagcagtgtt ttccacagtg
     3901 ccaatggaaa cctcccatgt ctgccttttc tataggccac tggtcctcaa gctcgtcaca
     3961 gacgctcatg gccatgcagc ctgacattca aattcctatc tcattattta tcctttcttt
     4021 gcatctctgg gattcattga tttttgacat ttttgtgtgg ttttacagga aataaagttt
     4081 ttatagtcag ttatgtcaga ctcctctgat ttcccttatc accctctcct tattttaaaa
     4141 atgatgaagc tgagggaggt gacacacaca cctgtcataa tcacttggga gctggaggca
     4201 aaaggatcag ttcagtcagt gttagccaca gctacagagt ggttgaggcc agcctgggct
     4261 acatgagagc atgtctttat tcagacaatc atttttaaat gactgaataa agtcagagtt
     4321 ggagaacatt a
//
