LOCUS       XM_017591519            4185 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus outer dense fiber of sperm tails 2
            (Odf2), transcript variant X1, mRNA.
ACCESSION   XM_017591519
VERSION     XM_017591519.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017591519.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017591519.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4185
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4185
                     /gene="Odf2"
                     /note="outer dense fiber of sperm tails 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 38 ESTs, 4 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 36 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:29479"
                     /db_xref="RGD:3229"
     CDS             4..2697
                     /gene="Odf2"
                     /codon_start=1
                     /product="outer dense fiber protein 2 isoform X1"
                     /protein_id="XP_017447008.1"
                     /db_xref="GeneID:29479"
                     /db_xref="RGD:3229"
                     /translation="MGELPTGCRKRRRKRGGAAAGAGLHPPRRLHGTTLASDFNDFIR
                     RRFWAQPCRSWFPSCGKNGVTSLTQKKVLRTPCGAPSVTVTKSHKRGMKGDTVNVRRS
                     VRVKTKVPWMPPGKSSARHVGCKWENPPHCLEITPPSSEKLVSVMRLSDLSTEDDDSG
                     HCKMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEH
                     ENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTI
                     GKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKELCLKVPECA
                     RQHRPGRERQEDCQDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEI
                     QCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKNLERSGNQHKAEVEA
                     IMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTL
                     ESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTA
                     EYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEA
                     DEVAAQLERCDKENKMLKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQD
                     QLQGYERKNIDLTAIISDLRSRIEHQGDKLELAREKHQASQKENKQLSQKVDELERKL
                     EATSTQNVEFLQVIAKREEAIHQAQLRLEEKTRECGSLARQLESAIEDARRQVEQTKE
                     QALSKERAAQSKILDLETQLSRTKTELGQLRRTRDDVDRRYQSRLQDLKDRLEQSEST
                     NRSMQNYVQFLKSSYANVFGDGPYTSSYLTSSPIRSRSPPA"
ORIGIN      
        1 ccaatgggcg agctgccgac cggttgtcgg aaaaggaggc ggaagcgggg aggagccgcc
       61 gcgggagccg gactgcatcc gccgcggcgt ctccatggca cgaccctggc ctccgacttc
      121 aacgacttca taaggagacg gttctgggcg cagccgtgcc gctcttggtt tccatcgtgt
      181 gggaagaacg gagtaacgag tctcacacag aaaaaagtct tgagaacacc ttgtggcgca
      241 cccagtgtaa ctgtgacgaa atctcataag cgcggaatga aaggggacac cgtgaatgta
      301 cggcggagtg tccgggtgaa aaccaaggta ccttggatgc cccctggaaa atcatctgcc
      361 cggcatgtgg gatgcaagtg ggagaatcca cctcattgcc tggagatcac accaccatct
      421 tcagaaaagc tggtctcggt gatgcgattg agtgaccttt ctacagaaga cgacgattct
      481 ggtcactgta agatgaaccg ttacgataag aagattgaca gtctaatgaa cgcggtcggt
      541 tgtctcaaat ctgaggtcaa gatgcagaaa ggtgaacgcc aaatggccaa aaggttcctg
      601 gaggagagga aggaagaact ggaggaggta gcacatgagc ttgcagagac ggagcatgag
      661 aacacagtgc tcagacacaa catcgagcgc atcaaggagg agaaggactt caccatgctt
      721 caaaagaaac acctccagca ggagaaggaa tgcctcatgt ccaaactggt ggaggctgaa
      781 atggatgggg cggctgctgc caaacaagtc atggccttga aggataccat cgggaagctg
      841 aaaaccgaga aacagatgac ttgcaccgac atcaacacct taacgaggca gaaggaactt
      901 ctcctgcaga agctgagcac ctttgaagag accaaccgca ccctccgaga tctgttgagg
      961 gagcagcact gcaaagagct gtgcctgaaa gttcctgaat gtgcgaggca gcacaggcct
     1021 gggagggaga ggcaggagga ttgtcaggat tccgagagac taatggagca acaaggtgca
     1081 ttactgaaac gtctggcaga ggccgactca gagaaagcgc gcctgctgtt actactgcaa
     1141 gacaaggaca aggaagtgga agaactcctc caggagatac aatgtgagaa ggctcaagca
     1201 aagacagcgt ctgagctctc caagtccatg gagtccatgc gggggcattt gcaggcacag
     1261 cttcgctgca aagaggctga gaacagccgc ctgtgcatgc agatcaagaa tttagagcgc
     1321 agtgggaacc agcacaaggc ggaagtagag gccatcatgg agcagctaaa ggaactgaag
     1381 caaaagggag accgagacaa agagaccctg aagaaggcca tccgagccca gaaggagcga
     1441 gctgagaaga gtgaggagta tgccgagcag ctacatgtgc agctggccga caaggacctt
     1501 tatgttgctg aagctttatc tactctggag tcatggagga gccgttacaa ccaagttgtg
     1561 aaagacaaag gagaccttga gttggagatc attgtcctaa atgaccgggt gacagatctt
     1621 gtaaaccaac aacagagctt ggaggagaag atgcgggaag accgggacag cttggtagag
     1681 agactgcacc ggcaaactgc tgagtattct gccttcaagc tagagaacga gaggctcaag
     1741 gctagctttg cccctatgga ggacaagctc aatcaggctc acttggaggt ccagcaactg
     1801 aaggcatcag tgaagaacta cgaggggatg atcgacaact acaagagcca ggtgatgaaa
     1861 acaagattgg aggctgacga agtggctgcg cagctagagc gctgcgacaa agagaacaag
     1921 atgcttaaag acgagatgaa caaagaaatc gaggcggccc gtcggcagtt ccagtcacag
     1981 ctggctgacc tacaacagct gcctgacatc ctcaagatca cggaggccaa gctggctgag
     2041 tgtcaagacc agctgcaggg ctacgagagg aagaacatcg acctcacagc catcatttca
     2101 gacctgcgca gccggatcga acatcagggg gacaagctgg agttggcgag agagaaacat
     2161 caggcttccc agaaggaaaa taaacaactg agtcagaagg tggatgaact ggagaggaaa
     2221 ctggaggcca ccagcaccca gaatgtcgag ttcctacagg tgattgccaa gagggaggag
     2281 gcaatccacc aggctcagct gcggctggag gagaaaacga gggagtgtgg gtccttggcg
     2341 aggcagttgg agagtgccat tgaagatgcc aggcgacagg tggagcaaac caaggaacag
     2401 gcgctctcca aggaacgagc agcccagagc aaaatcctgg accttgagac ccagctgagt
     2461 aggaccaaga cagaacttgg ccagctacgc cggactcgtg atgatgtgga tcgaagatac
     2521 cagagccgtc tgcaggatct gaaagatcgc ctggagcagt ctgaaagcac caaccgcagc
     2581 atgcagaatt acgtccaatt cctcaagtcc tcctatgcaa atgtgtttgg ggatgggccc
     2641 tatacatcct cctacctgac cagctcaccc atccgctctc ggtctcctcc tgcctgaggc
     2701 cacctatcca gggtctgaag cccttgcagg atgccagaca actgtggcgt taccaaacca
     2761 tagctagcaa gcccactggg tctcagatgc gatcaggggt ctgttcctca actaatgcca
     2821 gcaaagaccc tagagcagcc agggatgaat caggagggct ctggttctct ctcctgatct
     2881 gggaacctgg tggaattttc taatgatctt cacagcctta tatttgctat attaggtact
     2941 agatttttaa atccctgtga ctagagtctt cttcctttcc tcagggaatg tttgtacaga
     3001 cttcctgcag agacgccctt ctcttctgaa gcgtctctgt cttgggtttc tttgagctga
     3061 agttgcagga gtccttctct gactctgaag gcctacattg ctttttcttt cctttttatt
     3121 tatttatttt ttatttttaa taaaaataga actttatttg tattaagaaa tagtgagggg
     3181 ttggggattt agctcagtag tagagcgctt gcctagcaag cgcaaggccc tgggtttggt
     3241 ccccagctcc gaaaaaaaga aaaggaaaaa aaaatagtga aaacatgtaa attagtaact
     3301 aagcctgtgc ttttatcagc ataaaaacat gacagagaga gagatgcaac gttcgttaga
     3361 gctcatggag gtaagaggct catagctcct agctcccgtg gaacctgtag ctacaaatgt
     3421 catgaaaata tgttgttgta ataagtccct cattacatag caactggcat gtcagagcta
     3481 cagcaggtgt gttcacagtg aaatgtttga acacagacca aactgtgtgg cacgtgtgct
     3541 tgtaaccgta tgttctggtt tcacagttct ggtaacacta actgaccacc tcttactgca
     3601 agtaaagtat agagcagtgc aggaatccgc ccatcatccc ctcacagagg ccgtggtgat
     3661 ctgtgttgtt ccagcattga tggatatgct actgaagggg aatctgcttt tctctccttg
     3721 gtgagcaggg caggaagcag tgttttccac agtgccaatg gaaacctccc atgtctgcct
     3781 tttctatagg ccactggtcc tcaagctcgt cacagacgct catggccatg cagcctgaca
     3841 ttcaaattcc tatctcatta tttatccttt ctttgcatct ctgggattca ttgatttttg
     3901 acatttttgt gtggttttac aggaaataaa gtttttatag tcagttatgt cagactcctc
     3961 tgatttccct tatcaccctc tccttatttt aaaaatgatg aagctgaggg aggtgacaca
     4021 cacacctgtc ataatcactt gggagctgga ggcaaaagga tcagttcagt cagtgttagc
     4081 cacagctaca gagtggttga ggccagcctg ggctacatga gagcatgtct ttattcagac
     4141 aatcattttt aaatgactga ataaagtcag agttggagaa catta
//
