LOCUS       NM_001399108            4151 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus outer dense fiber of sperm tails 2 (Odf2),
            transcript variant 3, mRNA.
ACCESSION   NM_001399108 XM_039104452
VERSION     NM_001399108.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4151)
  AUTHORS   Wang,C., Li,J., Takemaru,K.I., Jiang,X., Xu,G. and Wang,B.
  TITLE     Centrosomal protein Dzip1l binds Cby, promotes ciliary bud
            formation, and acts redundantly with Bromi to regulate ciliogenesis
            in the mouse
  JOURNAL   Development 145 (6) (2018)
   PUBMED   29487109
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4151)
  AUTHORS   Huang,N., Xia,Y., Zhang,D., Wang,S., Bao,Y., He,R., Teng,J. and
            Chen,J.
  TITLE     Hierarchical assembly of centriole subdistal appendages via
            centrosome binding proteins CCDC120 and CCDC68
  JOURNAL   Nat Commun 8, 15057 (2017)
   PUBMED   28422092
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 4151)
  AUTHORS   Zhang,Z., Li,W., Zhang,Y., Zhang,L., Teves,M.E., Liu,H.,
            Strauss,J.F. 3rd, Pazour,G.J., Foster,J.A., Hess,R.A. and Zhang,Z.
  TITLE     Intraflagellar transport protein IFT20 is essential for male
            fertility and spermiogenesis in mice
  JOURNAL   Mol Biol Cell 27 (23), 3705-3716 (2016)
   PUBMED   27682589
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   4  (bases 1 to 4151)
  AUTHORS   Wang,X., Wei,Y., Fu,G., Li,H., Saiyin,H., Lin,G., Wang,Z., Chen,S.
            and Yu,L.
  TITLE     Tssk4 is essential for maintaining the structural integrity of
            sperm flagellum
  JOURNAL   Mol Hum Reprod 21 (2), 136-145 (2015)
   PUBMED   25361759
REFERENCE   5  (bases 1 to 4151)
  AUTHORS   Veleri,S., Manjunath,S.H., Fariss,R.N., May-Simera,H., Brooks,M.,
            Foskett,T.A., Gao,C., Longo,T.A., Liu,P., Nagashima,K.,
            Rachel,R.A., Li,T., Dong,L. and Swaroop,A.
  TITLE     Ciliopathy-associated gene Cc2d2a promotes assembly of subdistal
            appendages on the mother centriole during cilia biogenesis
  JOURNAL   Nat Commun 5, 4207 (2014)
   PUBMED   24947469
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 4151)
  AUTHORS   Donkor,F.F., Monnich,M., Czirr,E., Hollemann,T. and Hoyer-Fender,S.
  TITLE     Outer dense fibre protein 2 (ODF2) is a self-interacting
            centrosomal protein with affinity for microtubules
  JOURNAL   J Cell Sci 117 (Pt 20), 4643-4651 (2004)
   PUBMED   15340007
  REMARK    GeneRIF: Data demonstrate that outer dense fibre protein 2 is a
            self-interacting protein that forms a fibrillar structure partially
            linked to the microtubule network.
REFERENCE   7  (bases 1 to 4151)
  AUTHORS   Sun,X.D., Yu,Z.R., Ma,J., Ge,Y.H., Li,S., Xue,S.P. and Han,D.S.
  TITLE     [Characterization of expression of the centrosomal protein,
            Cenexin, in rat spermatogenesis]
  JOURNAL   Shi Yan Sheng Wu Xue Bao 35 (1), 21-25 (2002)
   PUBMED   15344312
  REMARK    GeneRIF: The results suggested that the expression pattern of
            cenexin in rat spermatogenesis might be related to the initiation
            of the flagella formation.
REFERENCE   8  (bases 1 to 4151)
  AUTHORS   Schalles,U., Shao,X., van der Hoorn,F.A. and Oko,R.
  TITLE     Developmental expression of the 84-kDa ODF sperm protein:
            localization to both the cortex and medulla of outer dense fibers
            and to the connecting piece
  JOURNAL   Dev Biol 199 (2), 250-260 (1998)
   PUBMED   9698445
REFERENCE   9  (bases 1 to 4151)
  AUTHORS   Turner,K.J., Sharpe,R.M., Gaughan,J., Millar,M.R., Foster,P.M. and
            Saunders,P.T.
  TITLE     Expression cloning of a rat testicular transcript abundant in germ
            cells, which contains two leucine zipper motifs
  JOURNAL   Biol Reprod 57 (5), 1223-1232 (1997)
   PUBMED   9369191
REFERENCE   10 (bases 1 to 4151)
  AUTHORS   Brohmann,H., Pinnecke,S. and Hoyer-Fender,S.
  TITLE     Identification and characterization of new cDNAs encoding outer
            dense fiber proteins of rat sperm
  JOURNAL   J Biol Chem 272 (15), 10327-10332 (1997)
   PUBMED   9092585
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jan 4, 2022 this sequence version replaced XM_039104452.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643289.8401.1,
                                           SRR26360186.2318483.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-105               JAXUCZ010000003.1  33559412-33559516
            106-196             JAXUCZ010000003.1  33561832-33561922
            197-350             JAXUCZ010000003.1  33562637-33562790
            351-419             JAXUCZ010000003.1  33563076-33563144
            420-590             JAXUCZ010000003.1  33573346-33573516
            591-751             JAXUCZ010000003.1  33574611-33574771
            752-881             JAXUCZ010000003.1  33575676-33575805
            882-1013            JAXUCZ010000003.1  33576314-33576445
            1014-1085           JAXUCZ010000003.1  33583501-33583572
            1086-1157           JAXUCZ010000003.1  33584898-33584969
            1158-1274           JAXUCZ010000003.1  33585055-33585171
            1275-1460           JAXUCZ010000003.1  33585408-33585593
            1461-1570           JAXUCZ010000003.1  33585910-33586019
            1571-1706           JAXUCZ010000003.1  33588494-33588629
            1707-1817           JAXUCZ010000003.1  33591097-33591207
            1818-1922           JAXUCZ010000003.1  33591328-33591432
            1923-2081           JAXUCZ010000003.1  33592454-33592612
            2082-2182           JAXUCZ010000003.1  33593961-33594061
            2183-2345           JAXUCZ010000003.1  33596207-33596369
            2346-2471           JAXUCZ010000003.1  33596948-33597073
            2472-4151           JAXUCZ010000003.1  33603397-33605076
FEATURES             Location/Qualifiers
     source          1..4151
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p12"
     gene            1..4151
                     /gene="Odf2"
                     /note="outer dense fiber of sperm tails 2"
                     /db_xref="GeneID:29479"
                     /db_xref="RGD:3229"
     exon            1..105
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            106..196
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            197..350
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     CDS             243..2663
                     /gene="Odf2"
                     /note="isoform 3 is encoded by transcript variant 3; outer
                     dense fiber protein 2; testis-specific autoantigen;
                     cenexin; 84 kDa outer dense fiber protein; outer dense
                     fiber of sperm tails protein 2; sperm outer dense fiber
                     major protein 2; outer dense fiber of sperm tail 2"
                     /codon_start=1
                     /product="outer dense fiber protein 2 isoform 3"
                     /protein_id="NP_001386037.1"
                     /db_xref="GeneID:29479"
                     /db_xref="RGD:3229"
                     /translation="MKDRSSTPPLHVHVDENTPVHVHIKKLPKPSAASSQKSHKRGMK
                     GDTVNVRRSVRVKTKNPPHCLEITPPSSEKLVSVMRLSDLSTEDDDSGHCKMNRYDKK
                     IDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIE
                     RIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMT
                     CTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQQGALLKRLAEA
                     DSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEA
                     ENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKS
                     EEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVN
                     QQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQL
                     KASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEMNKEIEAARRQFQ
                     SQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLELA
                     REKHQASQKENKQLSQKVDELERKLEATSTQNVEFLQVIAKREEAIHQAQLRLEEKTR
                     ECGSLARQLESAIEDARRQVEQTKEQALSKERAAQSKILDLETQLSRTKTELGQLRRT
                     RDDVDRRYQSRLQDLKDRLEQSESTNRSMQNYVQFLKSSYANVFGDGPYTSSYLTSSP
                     IRSRSPPA"
     exon            351..419
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            420..590
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            591..751
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            752..881
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            882..1013
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1014..1085
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1086..1157
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1158..1274
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1275..1460
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1461..1570
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1571..1706
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1707..1817
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1818..1922
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1923..2081
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2082..2182
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2183..2345
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2346..2471
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2472..4151
                     /gene="Odf2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggagccgga ctgcatccgc cgcggcgtct ccatggcacg accctggcct ccgacttcaa
       61 cgacttcata aggagacggt tctgggcgca gccgtgccgc tcttggtttc catcgtgtgg
      121 gaagaacgga gtaacgagtc tcacacagaa aaaagtcttg agaacacctt gtggcgcacc
      181 cagtgtaact gtgacgatcg atcttttttg tgttgccctc ccctgcctgc cagaagtgaa
      241 ccatgaagga ccgatcttca actcccccct tacatgttca tgtggatgag aacactcctg
      301 tccacgtcca cataaaaaaa ctcccgaaac catcagcagc cagcagccag aaatctcata
      361 agcgcggaat gaaaggggac accgtgaatg tacggcggag tgtccgggtg aaaaccaaga
      421 atccacctca ttgcctggag atcacaccac catcttcaga aaagctggtc tcggtgatgc
      481 gattgagtga cctttctaca gaagacgacg attctggtca ctgtaagatg aaccgttacg
      541 ataagaagat tgacagtcta atgaacgcgg tcggttgtct caaatctgag gtcaagatgc
      601 agaaaggtga acgccaaatg gccaaaaggt tcctggagga gaggaaggaa gaactggagg
      661 aggtagcaca tgagcttgca gagacggagc atgagaacac agtgctcaga cacaacatcg
      721 agcgcatcaa ggaggagaag gacttcacca tgcttcaaaa gaaacacctc cagcaggaga
      781 aggaatgcct catgtccaaa ctggtggagg ctgaaatgga tggggcggct gctgccaaac
      841 aagtcatggc cttgaaggat accatcggga agctgaaaac cgagaaacag atgacttgca
      901 ccgacatcaa caccttaacg aggcagaagg aacttctcct gcagaagctg agcacctttg
      961 aagagaccaa ccgcaccctc cgagatctgt tgagggagca gcactgcaaa gaggattccg
     1021 agagactaat ggagcaacaa ggtgcattac tgaaacgtct ggcagaggcc gactcagaga
     1081 aagcgcgcct gctgttacta ctgcaagaca aggacaagga agtggaagaa ctcctccagg
     1141 agatacaatg tgagaaggct caagcaaaga cagcgtctga gctctccaag tccatggagt
     1201 ccatgcgggg gcatttgcag gcacagcttc gctgcaaaga ggctgagaac agccgcctgt
     1261 gcatgcagat caagaattta gagcgcagtg ggaaccagca caaggcggaa gtagaggcca
     1321 tcatggagca gctaaaggaa ctgaagcaaa agggagaccg agacaaagag accctgaaga
     1381 aggccatccg agcccagaag gagcgagctg agaagagtga ggagtatgcc gagcagctac
     1441 atgtgcagct ggccgacaag gacctttatg ttgctgaagc tttatctact ctggagtcat
     1501 ggaggagccg ttacaaccaa gttgtgaaag acaaaggaga ccttgagttg gagatcattg
     1561 tcctaaatga ccgggtgaca gatcttgtaa accaacaaca gagcttggag gagaagatgc
     1621 gggaagaccg ggacagcttg gtagagagac tgcaccggca aactgctgag tattctgcct
     1681 tcaagctaga gaacgagagg ctcaaggcta gctttgcccc tatggaggac aagctcaatc
     1741 aggctcactt ggaggtccag caactgaagg catcagtgaa gaactacgag gggatgatcg
     1801 acaactacaa gagccaggtg atgaaaacaa gattggaggc tgacgaagtg gctgcgcagc
     1861 tagagcgctg cgacaaagag aacaagatgc ttaaagacga gatgaacaaa gaaatcgagg
     1921 cggcccgtcg gcagttccag tcacagctgg ctgacctaca acagctgcct gacatcctca
     1981 agatcacgga ggccaagctg gctgagtgtc aagaccagct gcagggctac gagaggaaga
     2041 acatcgacct cacagccatc atttcagacc tgcgcagccg gatcgaacat cagggggaca
     2101 agctggagtt ggcgagagag aaacatcagg cttcccagaa ggaaaataaa caactgagtc
     2161 agaaggtgga tgaactggag aggaaactgg aggccaccag cacccagaat gtcgagttcc
     2221 tacaggtgat tgccaagagg gaggaggcaa tccaccaggc tcagctgcgg ctggaggaga
     2281 aaacgaggga gtgtgggtcc ttggcgaggc agttggagag tgccattgaa gatgccaggc
     2341 gacaggtgga gcaaaccaag gaacaggcgc tctccaagga acgagcagcc cagagcaaaa
     2401 tcctggacct tgagacccag ctgagtagga ccaagacaga acttggccag ctacgccgga
     2461 ctcgtgatga tgtggatcga agataccaga gccgtctgca ggatctgaaa gatcgcctgg
     2521 agcagtctga aagcaccaac cgcagcatgc agaattacgt ccaattcctc aagtcctcct
     2581 atgcaaatgt gtttggggat gggccctata catcctccta cctgaccagc tcacccatcc
     2641 gctctcggtc tcctcctgcc tgaggccacc tatccagggt ctgaagccct tgcaggatgc
     2701 cagacaactg tggcgttacc aaaccatagc tagcaagccc actgggtctc agatgcgatc
     2761 aggggtctgt tcctcaacta atgccagcaa agaccctaga gcagccaggg atgaatcagg
     2821 agggctctgg ttctctctcc tgatctggga acctggtgga attttctaat gatcttcaca
     2881 gccttatatt tgctatatta ggtactagat ttttaaatcc ctgtgactag agtcttcttc
     2941 ctttcctcag ggaatgtttg tacagacttc ctgcagagac gcccttctct tctgaagcgt
     3001 ctctgtcttg ggtttctttg agctgaagtt gcaggagtcc ttctctgact ctgaaggcct
     3061 acattgcttt ttctttcctt tttatttatt tattttttat ttttaataaa aatagaactt
     3121 tatttgtatt aagaaatagt gaggggttgg ggatttagct cagtagtaga gcgcttgcct
     3181 agcaagcgca aggccctggg tttggtcccc agctccgaaa aaaagaaaag gaaaaaaaaa
     3241 tagtgaaaac atgtaaatta gtaactaagc ctgtgctttt atcagcataa aaacatgaca
     3301 gagagagaga tgcaacgttc gttagagctc atggaggtaa gaggctcata gctcctagct
     3361 cccgtggaac ctgtagctac aaatgtcatg aaaatatgtt gttgtaataa gtccctcatt
     3421 acatagcaac tggcatgtca gagctacagc aggtgtgttc acagtgaaat gtttgaacac
     3481 agaccaaact gtgtggcacg tgtgcttgta accgtatgtt ctggtttcac agttctggta
     3541 acactaactg accacctctt actgcaagta aagtatagag cagtgcagga atccgcccat
     3601 catcccctca cagaggccgt ggtgatctgt gttgttccag cattgatgga tatgctactg
     3661 aaggggaatc tgcttttctc tccttggtga gcagggcagg aagcagtgtt ttccacagtg
     3721 ccaatggaaa cctcccatgt ctgccttttc tataggccac tggtcctcaa gctcgtcaca
     3781 gacgctcatg gccatgcagc ctgacattca aattcctatc tcattattta tcctttcttt
     3841 gcatctctgg gattcattga tttttgacat ttttgtgtgg ttttacagga aataaagttt
     3901 ttatagtcag ttatgtcaga ctcctctgat ttcccttatc accctctcct tattttaaaa
     3961 atgatgaagc tgagggaggt gacacacaca cctgtcataa tcacttggga gctggaggca
     4021 aaaggatcag ttcagtcagt gttagccaca gctacagagt ggttgaggcc agcctgggct
     4081 acatgagagc atgtctttat tcagacaatc atttttaaat gactgaataa agtcagagtt
     4141 ggagaacatt a
//
