LOCUS       NM_024126                969 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus outer dense fiber of sperm tails 1 (Odf1), mRNA.
ACCESSION   NM_024126
VERSION     NM_024126.5
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 969)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   2  (bases 1 to 969)
  AUTHORS   Bhullar,B., Zhang,Y., Junco,A., Oko,R. and van der Hoorn,F.A.
  TITLE     Association of kinesin light chain with outer dense fibers in a
            microtubule-independent fashion
  JOURNAL   J Biol Chem 278 (18), 16159-16168 (2003)
   PUBMED   12594206
REFERENCE   3  (bases 1 to 969)
  AUTHORS   Zarsky,H.A., Tarnasky,H.A., Cheng,M. and van der Hoorn,F.A.
  TITLE     Novel RING finger protein OIP1 binds to conserved amino acid
            repeats in sperm tail protein ODF1
  JOURNAL   Biol Reprod 68 (2), 543-552 (2003)
   PUBMED   12533418
  REMARK    GeneRIF: OIP1 binds to evolutionarily conserved Cys-Gly-Pro repeats
            in C-terminus of ODF1.
            Erratum:[Biol Reprod. 2003 Oct;69(4):1447]
REFERENCE   4  (bases 1 to 969)
  AUTHORS   Nakamura,Y., Tanaka,H., Koga,M., Miyagawa,Y., Iguchi,N., Egydio de
            Carvalho,C., Yomogida,K., Nozaki,M., Nojima,H., Matsumiya,K.,
            Okuyama,A. and Nishimune,Y.
  TITLE     Molecular cloning and characterization of oppo 1: a haploid germ
            cell-specific complementary DNA encoding sperm tail protein
  JOURNAL   Biol Reprod 67 (1), 1-7 (2002)
   PUBMED   12079992
REFERENCE   5  (bases 1 to 969)
  AUTHORS   Shao,X., Tarnasky,H.A., Lee,J.P., Oko,R. and van der Hoorn,F.A.
  TITLE     Spag4, a novel sperm protein, binds outer dense-fiber protein Odf1
            and localizes to microtubules of manchette and axoneme
  JOURNAL   Dev Biol 211 (1), 109-123 (1999)
   PUBMED   10373309
REFERENCE   6  (bases 1 to 969)
  AUTHORS   Morales,C.R., Oko,R. and Clermont,Y.
  TITLE     Molecular cloning and developmental expression of an mRNA encoding
            the 27 kDa outer dense fiber protein of rat spermatozoa
  JOURNAL   Mol Reprod Dev 37 (2), 229-240 (1994)
   PUBMED   8179907
REFERENCE   7  (bases 1 to 969)
  AUTHORS   Burfeind,P., Belgardt,B., Szpirer,C. and Hoyer-Fender,S.
  TITLE     Structure and chromosomal assignment of a gene encoding the major
            protein of rat sperm outer dense fibres
  JOURNAL   Eur J Biochem 216 (2), 497-505 (1993)
   PUBMED   8375388
REFERENCE   8  (bases 1 to 969)
  AUTHORS   Hoyer-Fender,S.
  TITLE     Identity of two rat testis cDNAs
  JOURNAL   Dev Biol 157 (2), 553 (1993)
   PUBMED   8500659
REFERENCE   9  (bases 1 to 969)
  AUTHORS   Burfeind,P. and Hoyer-Fender,S.
  TITLE     Sequence and developmental expression of a mRNA encoding a putative
            protein of rat sperm outer dense fibers
  JOURNAL   Dev Biol 148 (1), 195-204 (1991)
   PUBMED   1936558
REFERENCE   10 (bases 1 to 969)
  AUTHORS   van der Hoorn,F.A., Tarnasky,H.A. and Nordeen,S.K.
  TITLE     A new rat gene RT7 is specifically expressed during spermatogenesis
  JOURNAL   Dev Biol 142 (1), 147-154 (1990)
   PUBMED   1699827
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC078708.1.
            
            On Oct 3, 2006 this sequence version replaced NM_024126.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC078708.1, M88759.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..969
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q22"
     gene            1..969
                     /gene="Odf1"
                     /note="outer dense fiber of sperm tails 1"
                     /db_xref="GeneID:24610"
                     /db_xref="RGD:3228"
     exon            1..356
                     /gene="Odf1"
                     /inference="alignment:Splign:2.1.0"
     CDS             79..816
                     /gene="Odf1"
                     /note="RTS 5/1; Sperm outer dense fiber major protein 1"
                     /codon_start=1
                     /product="outer dense fiber protein 1"
                     /protein_id="NP_077040.2"
                     /db_xref="GeneID:24610"
                     /db_xref="RGD:3228"
                     /translation="MAALSCLLDSVRRDIKKVDRELRQLRCIDEISSRCLCDLYMHPY
                     CCCDLHPYPYCLCYSKRSRSCGLCDLYYPCCLCDYKLYCLRPSLRSLERLRRTTNRIL
                     ASSCCSSNILGSVNVCGFEPDQVKVRVKDGKVCVSAERENRYDCLGSKKYSYMNICKE
                     FSLPPCVDEKDVTYSYGLGSCVKIESPCYPCTSPCNPCNPCSPCSPCGPCGPCGPCGP
                     CGPCGPCDPCNPCYPCGSRFSCRKMIL"
     exon            357..934
                     /gene="Odf1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgagaagagc ttagaacaat tttttcctct gagtgccatt tcccaaaggt actcacagaa
       61 caataaggtg tgaccataat ggccgcactg agttgtcttt tggacagtgt tagaagggac
      121 ataaagaagg tggacagaga actaagacaa ttgagatgta tcgacgaaat cagctcccgc
      181 tgcctgtgtg acttatacat gcacccttac tgctgctgcg acctgcaccc ctacccctac
      241 tgcctctgct actccaagcg atcccgctcc tgtggcctgt gtgacctcta ctacccgtgc
      301 tgcctgtgtg actacaagct gtactgcctc cgcccatcgc tccgcagctt agagagactc
      361 agaaggacga caaatagaat tctggcctcc tcttgctgca gcagtaacat tttaggatcg
      421 gtgaacgtct gcggctttga acctgatcag gtcaaagtgc gcgttaaaga tggaaaggtc
      481 tgcgtatcgg ccgagaggga aaacaggtac gactgcctcg gatccaaaaa gtacagttac
      541 atgaacatct gcaaagagtt cagtctgccg ccgtgcgtgg atgagaaaga cgtgacctac
      601 tcctacgggc tcggcagttg tgtcaagatc gagtctccat gctacccttg cacgtctccc
      661 tgcaacccct gcaacccctg cagcccctgc agcccctgcg gcccctgcgg tccttgcggt
      721 ccctgtggcc cctgtggtcc ctgcggcccc tgcgaccctt gcaacccctg ctatccctgt
      781 ggaagccgat tctcctgtag gaagatgatc ttgtaaggtg tatgataaga actatgtctt
      841 agcagaagtc agtattccaa ccaggcagct cttcagcatt tctcatcccc ttcccacagc
      901 ccgtgtagga aacttaatac ataactgcat ctgaaaaaaa aaaaaaaaaa aaaaaaaaaa
      961 aaaaaaaaa
//
