LOCUS       XM_006248852             800 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus oncomodulin (Ocm), transcript variant
            X1, mRNA.
ACCESSION   XM_006248852
VERSION     XM_006248852.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086030) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006248852.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..800
                     /gene="Ocm"
                     /gene_synonym="Ocm2; OM"
                     /note="oncomodulin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 2 ESTs, 6 long SRA reads,
                     12 Proteins"
                     /db_xref="GeneID:25503"
                     /db_xref="RGD:3222"
     CDS             158..547
                     /gene="Ocm"
                     /gene_synonym="Ocm2; OM"
                     /codon_start=1
                     /product="oncomodulin isoform X1"
                     /protein_id="XP_006248914.1"
                     /db_xref="GeneID:25503"
                     /db_xref="RGD:3222"
                     /translation="MSWHLLRTPSASAVPGWGEKMSITDILSAEDIAAALQECQDPDT
                     FEPQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESE
                     TKSLMDAADNDGDGKIGADEFQEMVHS"
     polyA_site      800
                     /gene="Ocm"
                     /gene_synonym="Ocm2; OM"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tgggtatgaa gagctgagca tttaggactt taaaatccca cctagctcca gcatccaggg
       61 ctcttggtga ctgagctgcg atgacaagcc cctcccagga aaccagccag aggccagcga
      121 ggtcaggctt tcagcatgtc tggatgggtg aggtgcaatg agttggcacc tcctgaggac
      181 tccgtctgca tcagcagtgc caggatgggg tgagaaaatg agcatcacgg acatcctgag
      241 cgctgaggac attgcggcag ccctgcagga atgccaagac ccagacacct ttgaaccaca
      301 aaagttcttc cagacatcgg gcctctccaa gatgtctgcc agccaagtga aggatatctt
      361 ccggttcata gacaacgacc agagtggata cctggatgga gatgagctca agtatttcct
      421 acagaagttc cagagtgacg ccagagaact gactgagtca gagaccaagt ccttgatgga
      481 cgcggcggac aacgacggag acgggaagat tggggcggat gaattccagg aaatggtgca
      541 ctcttaaggc ccaagtctac ggaagagaga gaggggaagg ggcaaatctg cctgaaggtt
      601 tcaaaagccc tgggactggg aagctcccca acctctcccg aactacttta ccgagtcccc
      661 cgaagccctt ctgcaccatg ttccttgttg agggaatgca atggtttgtg atggtgggta
      721 ggtcctgata acctctgtaa gcaccccccc cccggcagac aatgccttta aaaaccaccc
      781 aataaaatca tttctcatca
//
