LOCUS       NM_001271181            1664 bp    mRNA    linear   ROD 19-SEP-2024
DEFINITION  Rattus norvegicus OCIA domain containing 2 (Ociad2), mRNA.
ACCESSION   NM_001271181 XM_002728098 XM_003752720 XM_003752721
VERSION     NM_001271181.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1664)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 1664)
  AUTHORS   Archambaud,C., Nahori,M.A., Soubigou,G., Becavin,C., Laval,L.,
            Lechat,P., Smokvina,T., Langella,P., Lecuit,M. and Cossart,P.
  TITLE     Impact of lactobacilli on orally acquired listeriosis
  JOURNAL   Proc Natl Acad Sci U S A 109 (41), 16684-16689 (2012)
   PUBMED   23012479
REFERENCE   3  (bases 1 to 1664)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
REFERENCE   4  (bases 1 to 1664)
  AUTHORS   Da Cruz,S., Xenarios,I., Langridge,J., Vilbois,F., Parone,P.A. and
            Martinou,J.C.
  TITLE     Proteomic analysis of the mouse liver mitochondrial inner membrane
  JOURNAL   J Biol Chem 278 (42), 41566-41571 (2003)
   PUBMED   12865426
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            FM139638.1, FM129783.1, FQ214213.1 and FM060772.1.
            
            On or before Sep 7, 2012 this sequence version replaced
            XM_002728098.2, XM_003752720.1, XM_003752721.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ214213.1, FM139638.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-333               FM139638.1         1-333
            334-522             FM129783.1         349-537
            523-768             FQ214213.1         512-757
            769-1375            FM060772.1         96-702
            1376-1664           FQ214213.1         1370-1658
FEATURES             Location/Qualifiers
     source          1..1664
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14p11"
     gene            1..1664
                     /gene="Ociad2"
                     /note="OCIA domain containing 2"
                     /db_xref="GeneID:100361733"
                     /db_xref="RGD:2319541"
     exon            1..36
                     /gene="Ociad2"
                     /inference="alignment:Splign:2.1.0"
     exon            37..163
                     /gene="Ociad2"
                     /inference="alignment:Splign:2.1.0"
     CDS             98..562
                     /gene="Ociad2"
                     /note="rCG57079-like"
                     /codon_start=1
                     /product="OCIA domain-containing protein 2"
                     /protein_id="NP_001258110.1"
                     /db_xref="GeneID:100361733"
                     /db_xref="RGD:2319541"
                     /translation="MASVSTHGNQEKSHHLPPLSKQSLLFCPKSKLHIHRGEIAKIIR
                     ECQEESFWKRALPFSLISMLVTQGLVHQGYLAANPRFGSLPKVALAGLLGFGLGKASY
                     IRVCQSKFHSFEDQLRGAGFGPEHNRHCLLTCEDCKTRRGLSEKAESQPSAS"
     exon            164..260
                     /gene="Ociad2"
                     /inference="alignment:Splign:2.1.0"
     exon            261..314
                     /gene="Ociad2"
                     /inference="alignment:Splign:2.1.0"
     exon            315..362
                     /gene="Ociad2"
                     /inference="alignment:Splign:2.1.0"
     exon            363..480
                     /gene="Ociad2"
                     /inference="alignment:Splign:2.1.0"
     exon            481..1647
                     /gene="Ociad2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggaaggagg gaagaaagga aaaatcgcga agaaagtcac ccgggacacg gagtgctcag
       61 aacactcaac cgggatagaa gaaagaacga cagcatcatg gcctcagtgt ccactcatgg
      121 gaaccaagag aaaagtcacc acttgccgcc actgagcaag cagagcctgt tgttttgccc
      181 caaatcaaaa ctgcacatcc acagagggga gatcgccaag ataatccgag agtgtcaaga
      241 agagagtttc tggaagagag ccctgccttt ttctctaata agcatgcttg tcacccaggg
      301 actggtccac caaggctatt tagctgctaa tccaagattt ggatcattgc ctaaagttgc
      361 actggctggc ctcttgggat ttggccttgg gaaagcttcc tacataagag tgtgccagag
      421 taaattccat tcctttgaag atcagctccg tggtgctggc tttggacccg agcataacag
      481 gcactgcctg ctcacctgtg aggactgcaa aaccaggcga ggattaagcg agaaggcaga
      541 gtcacagcca tctgcttcct aaactgaggc tgtggtttcc aatcattttt aaacctctga
      601 ctttgtacac atttaaaatt tcaagtgtac cttaaaataa catacttcta tcaaaacaga
      661 aaccttgtaa ttctctcact cctctgaaat gcttgctgtt gaaggctctc gattgacttg
      721 agcatggtat agtcttctct tctttaagaa gacattggga gctgtcccac actacccagg
      781 aaagaagtta aagcccgctt tgcttagagc ttcccgggag atctttgaat agcttctggg
      841 tcatccttcc ctggttccct cactctgatt taatttttat tttccgtgtt ttaagtttct
      901 tggtagagaa caggaatgga tgatgtgaaa gttagttggg accaactaaa gtctagagct
      961 gagatctgta actcagtgtt gaagcatttt ctacgaaagg gtcgccattc aaacctatgt
     1021 aatcaacaat gtgatcaatg tgacttggtt caccacaatg gtggagctgt aaaagtgacc
     1081 gtcatctatc cataggtgtc ctgcttggct cgtgggccca ttctcagggt tacccaacag
     1141 tgggtccttt tacccattat tagagacctc aaaaaagacg acttcttaac ccattccccc
     1201 agacagcttc ctagaaggtg ctggaggact gaattaattc tagaaatgag aatctctggg
     1261 aacttttggg agctcagagg cagccaaggc aatggtgtca gatggacttt tgcttaaagg
     1321 caagttagtt gagcactgtg tgaaagctgt tcttagagct ttgcagcttc tcgggggaaa
     1381 atgctttgtc tatacatcac catttaaata aggggtatgt ggggtgtgtg gggtgtgtgg
     1441 gtacttttta ctcagcacac ctgcaagcct aaatcatgga gctaaaaagg gaaatttcat
     1501 tagagtttca tgtttgatgt aaaatatttc agtttaaaca tcaaaactat ttttgtgtga
     1561 acattgaatg gatttgcctg cattgatttt tatatgacat accctgttga cagtcaataa
     1621 aattctattt ctgaaaatca aaaggcaaaa aaaaaaaaaa aaaa
//
