LOCUS       NM_001106065            1154 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus occludin/ELL domain containing 1 (Ocel1), mRNA.
ACCESSION   NM_001106065 XM_001065228 XM_214288
VERSION     NM_001106065.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1154)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474031.2.
            
            [WARNING] On Mar 20, 2025 this sequence was replaced by
            NM_001106065.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001065228.1, XM_214288.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BM389499.1, BI295102.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132263
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1154
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p14"
     gene            1..1154
                     /gene="Ocel1"
                     /gene_synonym="RGD1563236; RGD1565407"
                     /note="occludin/ELL domain containing 1"
                     /db_xref="GeneID:290628"
                     /db_xref="RGD:1565407"
     exon            1..693
                     /gene="Ocel1"
                     /gene_synonym="RGD1563236; RGD1565407"
                     /inference="alignment:Splign:2.1.0"
     CDS             362..1042
                     /gene="Ocel1"
                     /gene_synonym="RGD1563236; RGD1565407"
                     /codon_start=1
                     /product="occludin/ELL domain-containing protein 1"
                     /protein_id="NP_001099535.1"
                     /db_xref="GeneID:290628"
                     /db_xref="RGD:1565407"
                     /translation="MQIPAGPSSRRRSRGPLACGSQSRRSGPDATCNSRPAAGGRQSA
                     TAPCMPARERPQPRAGRPHCQPRPSELRTRPRKIVFADELQPRAPLHPEKHPRDLGPR
                     PNPVPDYELKYPPVTSRRDRSRYAAVFQDQYEEFLELQRQVGAMQAKLQQLEALLLSL
                     PPPRSQKEVRMAAHVRREFEKKRVDPGFLDKQARCDYLKGKLRHLKAQIRKFDDQRDS
                     NSENSVYF"
     exon            694..859
                     /gene="Ocel1"
                     /gene_synonym="RGD1563236; RGD1565407"
                     /inference="alignment:Splign:2.1.0"
     exon            860..913
                     /gene="Ocel1"
                     /gene_synonym="RGD1563236; RGD1565407"
                     /inference="alignment:Splign:2.1.0"
     exon            914..1154
                     /gene="Ocel1"
                     /gene_synonym="RGD1563236; RGD1565407"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcggctccg cccgcagttc ctgcacagct gcgctcccgg cggcagagcc aggggcagct
       61 ccgggacagg tgacaccgag cggaaccatc ggataaccac aggcgggcag gggccgggag
      121 ctccgcgggc cgaaaccccg cgaggcagga ggcagggagg cggtttcgac tcggcccagg
      181 gtcgacctcc gcggctttgc gcttttccgg tttcaaggat ggggcggggc ctgcggtgca
      241 ccgtcagcca ctctggtgcg tgacggcacg gtgacgccac ggcgcctctt ccacgcccct
      301 ttccggggtc cgcaccgtgg gacagaatct gggttgcgcg gccagccaac cgcgctcgcg
      361 tatgcaaata cccgcaggcc cctcctccag gcgccgctca cgcggtcctc tggcctgcgg
      421 atcccagtcc aggcgctcag gccctgatgc cacttgcaat tcgcgccctg ccgccggggg
      481 tcgccagagc gctacggcac catgcatgcc tgcccgggag cgtccgcagc cccgcgccgg
      541 acggccgcac tgccagccca ggcccagtga gctccgcacg aggccccgga agatcgtgtt
      601 tgcggatgag ctgcaacccc gggccccact gcacccagag aagcatccca gggatctggg
      661 accccgcccc aacccagtgc ctgactacga gcttaagtac ccaccagtga ccagcagaag
      721 ggaccgaagc cgctatgccg cagtgtttca ggaccagtac gaagagttct tggagctcca
      781 gcggcaggtg ggggccatgc aggctaagct ccagcaactg gaggctctgc tgctgtcact
      841 gcccccgccg cgaagccaga aggaggttcg catggcagct catgtcagaa gagagtttga
      901 gaagaagcgg gtggatcctg gtttcctgga taagcaagct cgctgtgact acctgaaggg
      961 taaactgagg cacctcaagg cccagatccg caaatttgat gaccaaaggg acagcaacag
     1021 tgagaactcc gtgtacttct gagtgtctta gacatggtgg tcggctcctc ttcccacggg
     1081 gaaccacacc agttcttccc gggaaagcaa gtcctgttga gaatcccaga gaataaacat
     1141 ggaatagaca ccta
//
