LOCUS       XM_039097342             873 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus oocyte specific homeobox 1 (Obox1),
            mRNA.
ACCESSION   XM_039097342
VERSION     XM_039097342.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 15% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..873
                     /gene="Obox1"
                     /note="oocyte specific homeobox 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins"
                     /db_xref="GeneID:691860"
                     /db_xref="RGD:1594617"
     CDS             1..873
                     /gene="Obox1"
                     /codon_start=1
                     /product="oocyte-specific homeobox protein 6-like"
                     /protein_id="XP_038953270.1"
                     /db_xref="GeneID:691860"
                     /db_xref="RGD:1594617"
                     /translation="MCSNAPRESSFQMPQGPARDFPCQVFHSLPVTRGSPMQPCLSVP
                     ERDLCPQESQRPSEKSRSVVQSGEHGDQQTSRVASRKERKVRITYTEKQKRMLQDHFN
                     SCRYPTQKDRMALASRVGVTHFDIQVWFKNNRAKDKRKNRQNIPAALPETNGSSEAVS
                     ESTHFPDSLPVVDSANVESTFVLDSIPKVNQSQEFSLHPVQACGGAMCSQQEDLLDGH
                     APDRGKDSAQSAAGEVQTGLAVAEAPLAMVCATQCPQSTQDSGPSAEELWQRILEDFD
                     KSEDWYAWGCTPSP"
ORIGIN      
        1 atgtgttcca atgcacccag agaatccagt ttccagatgc ctcaagggcc tgcaagggat
       61 tttccttgcc aagtgtttca tagtctccca gtgacccgag gaagtccaat gcaaccatgt
      121 ctttcagtcc cagaaaggga cctatgtcct caagagtccc aaagaccatc agaaaaatca
      181 agatctgtgg tgcagtcagg tgaacatggt gaccaacaaa ccagtcgcgt ggcttcaagg
      241 aaggagcgga aagtccgaat tacgtacact gagaaacaaa agcgcatgct gcaagatcat
      301 tttaatagtt gcagatatcc aacccagaag gatcgcatgg cactggcctc acgggttggt
      361 gtgacacact ttgacatcca ggtctggttc aagaacaacc gggctaagga caagcgcaag
      421 aatcgccaga atattccagc agcactgcca gagacaaatg gaagctctga agctgtttct
      481 gagtcaaccc attttcctga ttcattacca gttgttgact ctgccaatgt tgagtccaca
      541 tttgttctgg attccattcc aaaagtcaac cagagccagg aattttctct gcatcctgtt
      601 caagcctgtg gtggtgccat gtgtagtcag caagaagacc tgcttgatgg ccatgcccct
      661 gatagaggca aggactctgc tcaatcagca gcaggtgaag ttcagactgg cctagcagta
      721 gcagaagctc cattagccat ggtatgtgcc acccaatgtc cacagagtac tcaagattca
      781 ggtccatctg ctgaggagct ctggcaaagg atacttgaag actttgacaa gtcagaggat
      841 tggtacgctt ggggatgcac tccttcccca tga
//
