LOCUS       XM_039093836            7567 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NYN domain and retroviral integrase
            containing (Nynrin), mRNA.
ACCESSION   XM_039093836
VERSION     XM_039093836.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093836.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7567
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7567
                     /gene="Nynrin"
                     /note="NYN domain and retroviral integrase containing;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 23 ESTs, 1 long SRA read, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 150 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100912447"
                     /db_xref="RGD:6486974"
     CDS             118..5829
                     /gene="Nynrin"
                     /codon_start=1
                     /product="protein NYNRIN"
                     /protein_id="XP_038949764.1"
                     /db_xref="GeneID:100912447"
                     /db_xref="RGD:6486974"
                     /translation="MLLSGGKPPAQEWFMVQTKSKPRVHRQRLQVQRIFRVKVTAFQS
                     RPDTPYFWLQLEGPRENTGKAKEYLKGLCNPELWKEVRYPPVLHCAFLGAQGLFLDCL
                     CWSTLAYLVPGPPGSLMVGGLTESFTMTQNWLEELVARLRWGPAPMITPRGVWETEVT
                     RAFGALVWIRCDQYARDLLQLPPAVQELLLSLVRDAAGKEDIIEWLGHFGISGIYPKP
                     PDFLICPALQKKEGSSLVTIGESPVPLQEIGTLNRASENSKKLTGLGAAGSVVPAQST
                     PQDTAQQLVRDGSNKQGDDRNSAGEEGATAQDSAGEEGATAQDPSSQDSANHTQALLQ
                     QKQGQKTENRISLQSPALSVCPSWKAWAPGPAFGPSWPGTIAATFWKINELQSLHLVW
                     LLSQACFNFPFWQRPVGPIQLRLPGQNPLPLKLEWKQKELVPLPTAESPACRPDGDLG
                     REAALKHSLRPETPTKIISLSVVPGDCGIKEKVSPGLSQVGPSSTSIPQAGVELGDEG
                     RALSDCKGPEKLSSSALSTEQGGPRIQERPMAQAGMTGQSVPDTPTMSETLEVTTAAA
                     VSKVECTPTEGLPATPKVPTTLKKPAVYTEPTAPQVPSAPTEPAAPVVSTIPKAAVDQ
                     PAAPATPTTPQTPTAQKTPSVKTPAGPQTPKVQTGIIAKAESTAPKAPAATQAPAASN
                     ASSVSKTPEAQASAIAGPTMDVTKLLSEEVQASKCRATVLKGQGKPGRQGLQSSSTMA
                     SRSKHQFLKEGLLGAWDGTQRLSPHSQGTNIVTSFQRFNEALNTPFEMNLSEEPGNPG
                     LRRVVIDGSSVAMVHGLQHFFSCRGIAMAVQYFWNRGHREITVFVPTWQLKKNRRVRE
                     SHFLTKLHRLKMLSITPSQLENGKKITTYDYRFMVKLAEETDGVIVTNEQIHILMNNS
                     KKLMVKDRLLPFTFAGSLFMVPDDPLGRDGPTLEEFLKKPNRLDMDIGNFLKVWKTLP
                     PSSASISELGDAADAEPLEGPQNIEEGEKGEESLEEELVEEPGIPKPDEQEEQDSDPV
                     SVFGVECPSFSEEILQCLSLHDPSEGALDIDLLPVVSSPYLDVPWDGKAPSQQVLTQL
                     AQLTIPSNFTALSFFMGFMDSHRDVIPDYEVLVGPLHSLLKQKPDWQWNQEHEKSFLA
                     LKRALVCALCLSTPNPDLPFYLEVTVSQVSLTASLHQEHSGRKHPIAYTSKPLLPDED
                     SEGPQSGGDSPYAVAWALKHFSRCVGDNPVVLRLSYASRTTVDNEAWDSRRASNAWLI
                     RWSLLLQDKGKRELELSLLQGLLGENQLLTPASSMPRVFQLLPPSSDLSTFICVHVSG
                     YCFYHDDELCAGFGLYILSPTSPPVSLAFSCSPYTSTYAHLAGVACGLERFGQSQLPV
                     VFVTHCNWIFSVLWEFLPLWKVRGFLSSDGASLPHPSLLSYIISLTSCFSSLPFIYRT
                     SYRGSLFAVTVDTLAKQGAQGGGQWWDLPKDVPVPIVTPHTKGRKPNLLALQMSDSTL
                     ANIIAKLQAGQKLSGPSPFSSAFNSLSLDQDSGLLMFKAEKHPRVWVVPRQLRRDLIF
                     SVHDSPMGDHQGPEDTYKTLRLLGWWPGMQDHVKDYCRSCLFCIPRNLIGGELKVIES
                     PWPLRSTAPWSSLQIEVVGPVTVSEEGHKHVLIVADANTRWVEAFPLKPYTHVAVAQV
                     LLQHVFARWGVPIRLEAAQGPQFARHVLVSCGLALGAQVTTLSRSLQFPCLMSSEAYW
                     EFKRALKEFIFLYGKKWAASLPLLHLAFRASTTEATPFQVLTGGEMRLMEPSWWEMSR
                     ANIEGLKMDAFLLQLIRELLDLHWRVAEKASEKAENRRFKRESRESEWSVGDQVLLLS
                     LPRNGSSAKWMGPFYIGDRLSLSLYRVWGFPVPDKLGCVYPSSLMKAFPKNDTPLPLD
                     LEQ"
ORIGIN      
        1 agggggcgcg cctcaaggag gggaggcgtg gcttaggctg cggggctagg tggctggggg
       61 cctcggtgct gggacccgtg acacttctca cgctttccag gggcgggagg gacagccatg
      121 ctcttgtcgg ggggtaaacc cccagcgcag gaatggttca tggtgcagac aaaatcgaag
      181 ccccgggtac accggcagcg gctgcaagtc cagcgcatct tcagggtcaa ggtgaccgct
      241 ttccagagcc gtcccgacac cccttacttc tggctgcagc tggaggggcc ccgggaaaat
      301 acgggcaaag ccaaggaata tctgaaaggt ctgtgcaacc cagagctgtg gaaggaggtt
      361 cgctacccac cagtcctgca ctgtgccttc cttggggcac aaggcttgtt cctggactgc
      421 ctctgttgga gtaccctggc ctacctggtg cctggtcccc ctggctcctt aatggtgggt
      481 gggctgacgg agtcttttac catgacacag aactggctgg aggagctggt agcacggctg
      541 cgctggggcc ctgccccaat gatcaccccc agaggggttt gggagacaga ggtgacccgg
      601 gcttttgggg ctctggtgtg gatccgttgt gaccagtatg caagagacct gctgcagctt
      661 cctccagcag tccaggagct gcttctcagc ctggtccgag atgctgctgg caaggaagac
      721 atcattgagt ggctcggcca tttcggcatc tctggcattt accctaaacc accagacttc
      781 ctgatctgcc ctgccctgca gaagaaggaa ggctcatccc tggtaaccat aggagagagc
      841 cctgtacccc tccaagagat aggaaccttg aatcgggctt cagaaaattc gaagaaatta
      901 acaggtttgg gagcagctgg gtccgtggtc ccagctcaga gcactccgca ggacacggca
      961 cagcagctag tacgggacgg gtccaacaag caaggtgatg ataggaacag tgcgggagag
     1021 gaaggggcca ctgcacaaga cagtgccggg gaggaagggg ccactgcaca agaccccagc
     1081 agccaggatt ctgcgaacca tacacaagcc ctcttgcagc aaaagcaggg acagaagacg
     1141 gaaaacagaa tctcattgca gtcgccagct ctgagcgtgt gcccatcttg gaaggcctgg
     1201 gccccagggc cagcctttgg gccctcgtgg ccggggacca ttgctgccac cttctggaag
     1261 atcaatgaac tgcagtctct tcacctggtc tggctcctgt cccaggcttg cttcaatttc
     1321 cccttctggc agaggcccgt gggccccatc cagctgaggc tgccaggaca gaatcctttg
     1381 cccttaaaac tggaatggaa gcagaaagag ctggttcctc tgcccactgc agaaagtcca
     1441 gcttgtcgac cagatgggga cctaggaagg gaggcagccc taaagcatag cctgaggcca
     1501 gagaccccca ccaaaatcat cagtttatca gtggtgccag gagattgtgg catcaaagag
     1561 aaggttagcc caggactttc gcaagtaggg ccatcttcca catctatacc ccaggctgga
     1621 gttgagctgg gagatgaagg aagggcattg tcagattgta agggcccgga aaagctgtcc
     1681 tcttcggcac tgtccacaga gcaaggggga cccaggattc aagagaggcc aatggctcaa
     1741 gctgggatga caggtcagtc agtacctgac actccaacaa tgtctgaaac tcttgaagtg
     1801 accacagctg ccgcagtgtc caaagttgaa tgcacaccca ctgaggggct gcctgcaact
     1861 cccaaagtgc ctacaaccct gaagaagcct gcagtgtaca cagagcctac agctccccaa
     1921 gtgccttcgg ctccaacaga gccagcagct cctgtggtgt ccacaatccc aaaagcagct
     1981 gtggatcaac cagcagctcc tgccaccccc accacccccc aaactcccac agctcagaaa
     2041 acaccttcag tgaaaactcc tgcaggcccc cagaccccca aagttcaaac tgggatcatt
     2101 gctaaagcag agtctacagc ccccaaagcg cctgcggcca cccaagcacc tgcagcttct
     2161 aatgcctcca gtgtttctaa aacaccagag gctcaggcgt ctgccattgc agggccaacc
     2221 atggatgtaa ccaaactcct gagtgaggag gttcaggcct caaagtgtag agccaccgtg
     2281 ctgaagggcc agggaaagcc tgggaggcag ggtctccagt ccagtagcac catggcctcc
     2341 agaagtaagc atcagttcct gaaggaagga cttcttgggg cttgggatgg gacccagagg
     2401 ctgtcacctc actcccaggg caccaacata gtgaccagct tccagaggtt caacgaggcc
     2461 ttgaacacac ccttcgagat gaacttgtct gaggagcctg ggaacccagg gctgaggaga
     2521 gtggtcatcg acggcagcag tgtggccatg gtacacggcc tacagcactt cttctcatgc
     2581 cgaggcatcg ccatggcagt acagtacttc tggaaccgtg ggcaccgaga gatcaccgtg
     2641 ttcgtgccca cctggcagct gaagaagaac cggagggtga gagagagcca ctttctgacg
     2701 aagctgcaca gactcaagat gctgtctatc actccatccc agctggagaa cggcaagaag
     2761 atcaccactt acgattacag gttcatggta aagctggcag aggagaccga tggggtcatt
     2821 gtcactaatg agcagattca catcctaatg aataattcca agaaacttat ggtcaaagat
     2881 cgcctgctac ccttcacctt tgctgggagt ctcttcatgg taccagatga ccccctgggc
     2941 cgtgacggcc ccaccttgga ggaatttctg aagaagccaa acaggttgga catggacatt
     3001 ggcaatttct tgaaggtgtg gaagaccctt cctcccagct cagccagcat ctctgagctg
     3061 ggtgacgctg ctgatgctga acctttggag ggtccccaga acatagaaga aggggagaag
     3121 ggggaggaaa gcctggaaga ggagctggtg gaggagccag gaattccgaa gcctgatgaa
     3181 caagaggagc aggactctga ccccgtgtca gtgtttgggg tcgagtgccc ttccttttcc
     3241 gaggaaatcc tccagtgcct cagcctgcac gacccctccg agggggcttt agacatcgac
     3301 cttctgcctg tggtgtcttc gccatacctg gatgtcccct gggatgggaa ggctccgagt
     3361 cagcaggttc ttacccagct cgcacagctc accatcccta gcaacttcac cgcgctgtcc
     3421 ttcttcatgg gctttatgga ttcccaccgg gatgttattc ctgactacga agtcctcgtg
     3481 ggacccctgc acagcctcct caagcagaag ccagactggc agtggaacca ggagcatgag
     3541 aaatccttcc tggccctgaa acgagcccta gtgtgtgccc tctgcctgtc aacccccaac
     3601 cccgacctgc ccttctacct ggaagtgacc gtcagccaag tgtcactgac ggccagcctg
     3661 catcaggagc actcaggaag gaagcacccc atcgcctata cctcgaaacc tctcctcccc
     3721 gatgaggaca gtgagggtcc tcagtcaggc ggggacagcc cctatgccgt ggcttgggcc
     3781 ctgaagcact tttcccgatg cgtcggagac aatccagtgg tcctccgtct ttcttatgcc
     3841 tcccggacca cggtggataa cgaggcctgg gatagccgta gggcttccaa cgcatggttg
     3901 attcgatggt ctctcttgct gcaggacaaa ggcaagaggg aattggaatt gtcccttctc
     3961 cagggcctgc tgggggaaaa ccagctgctg acgcccgctt cctcgatgcc ccgagttttc
     4021 cagcttctgc ctccttcttc tgacctgtct acttttatct gtgtccatgt gtctggctat
     4081 tgcttctacc atgacgatga gttgtgtgct ggttttggtc tctacatctt gtccccgacc
     4141 agtcctccgg tctccctggc cttttcctgt tccccttata catccacata cgcccacctg
     4201 gcaggcgtgg cctgtggcct agagcgcttc ggccagtccc agctcccagt ggtgtttgtt
     4261 acccactgca actggatctt cagcgtcctg tgggagttcc taccactctg gaaagtccgc
     4321 ggcttcctgt cgtcggacgg ggcctcgcta cctcatccaa gcctgctctc ctacatcata
     4381 tctctcacgt cttgcttctc atcccttccc ttcatctacc gaacctctta tcggggctct
     4441 ctgtttgccg tgacggtgga cactctggcc aagcagggtg ctcaaggggg cgggcagtgg
     4501 tgggatttgc caaaggatgt gccagtgccc atagtgactc cccatactaa aggcaggaag
     4561 cccaacctgc tggccttaca gatgagtgac agcaccctgg ccaatatcat tgccaagctg
     4621 caggcagggc agaagttgtc tgggccctcc cctttcagtt ctgcctttaa ctcgctcagc
     4681 ctggaccaag acagcggcct gctcatgttc aaggcggaaa agcatcccag ggtctgggta
     4741 gtcccaaggc aacttcggag ggatctgatc ttctctgtgc atgacagccc catgggggat
     4801 caccaggggc cagaggacac ctataagacg ttgaggctgt tgggttggtg gcctgggatg
     4861 caggatcatg tgaaggatta ctgcaggagc tgtttgttct gcattccccg aaatctcata
     4921 ggtggggagt tgaaagttat cgagtcccca tggcctctca ggtcgaccgc tccctggtcc
     4981 agcctgcaga ttgaggtagt agggccagtc actgtaagtg aggagggtca caagcacgtg
     5041 ctcatcgtgg ccgacgccaa cacccgatgg gtggaggcat tccctctgaa gccctacacg
     5101 cacgtggctg tggcccaggt gttgttgcag catgtgtttg caagatgggg tgtccccata
     5161 aggctggagg cagcccaagg cccccagttt gcccgtcatg ttctggtgag ctgtgggctg
     5221 gccctaggag cccaggtgac tacactgagt aggtcccttc agttcccctg tctgatgagt
     5281 tcagaggcct actgggaatt caagagggcc ctgaaggagt tcatctttct gtatggcaag
     5341 aagtgggcag cctctctgcc tttgctgcac ctggctttta gggcctccac cacggaggcc
     5401 acaccattcc aggtgctgac tgggggtgag atgaggctga tggagccctc ctggtgggag
     5461 atgagccggg cgaacatcga agggctcaag atggatgctt tcttgcttca gctgattcgg
     5521 gagctgttgg acctccactg gagagtggca gaaaaggcca gcgagaaggc tgagaatagg
     5581 cgtttcaaga gggagagccg ggagagcgag tggagtgtgg gtgaccaagt cctcttgctg
     5641 tctctcccca ggaatggcag cagtgccaaa tggatgggtc ctttctatat tggggaccgc
     5701 ttgagcctat cgctctatag ggtgtggggc ttcccagtcc cagacaagct gggctgtgtc
     5761 tatcctagca gtctaatgaa ggcctttccc aagaatgaca cacccctgcc ccttgacttg
     5821 gagcagtgag ttagaatggt cggggagctg cctgttctag ggggtcccgc atttctgctg
     5881 ctagtcctcc cttctgatct gagcagtgct ctcagctctg tggggcccct tagttgtgcc
     5941 ttttgtggag aaggtcctta gtaaagcttt gctgaattgc cttgacctag ggaagaatgt
     6001 ccctagaaga catcccccgg taggggtgtt tggagaatgt gccaaaggtt gtcctatgtg
     6061 ggctctggaa gttttacact tgggagcaaa cgagtttcct caacaaggta ggccaggctc
     6121 acagtcctcc ccaagtgccg ccttttccct ttttacacac tcaggtgtgt attggtgtgc
     6181 acacccctcc ccagtgtctt atacccaaca tacacttaac agtgtggatt tggacctgcc
     6241 agtgggtagg tatcacggct ttctctcgtg ggagtgcctc cccttacacc gtgcatttgt
     6301 ttgcccttgg agttctcggt ggcacaggca caccggcagc aagaaggtag ctgttctcca
     6361 gtcagcctcc cttgccagca ccgggacagc tgttaaggaa gggttggagc ctttctgtgc
     6421 ctccaggatg gtggctctgg gtgggggttg atcagccata agtcacctac ctgttcctaa
     6481 ggggaggtgg aaggggatga attggcctac ctcatttgat tccagtcagc agatgattcc
     6541 cgacccctgc tgtgatggca gtcacttcac aggaatcaag ggccttgata ccaaacctgg
     6601 catctgtgct ggaagagctg cttctgttag gttcggtggt gctcacaact ctggctcaag
     6661 gggagggcat ctgacgtggg tagtttgaca catggctggg cgccgggtgg ctttttcctc
     6721 ttgcacctat gactcctctc accccctgcc aaagctcaca accctctcct gcctgcagtg
     6781 tacccatctc cttagatggg actgctttgt cctgatcagc tgcagtgccc agaatctgcc
     6841 tctgtgtaga gctcgcttac agccagtgtg tagagcgagc tctctcagca ggagtgaggg
     6901 ctgagattct cactaccctg cattcctaca cagccaagct gacaggctgg agagaaaggc
     6961 cagcaccagg ccactctggc ttggagtcct agtagctcat ttcttgagga gccaatctgg
     7021 ttttccagct gagctcaggt tgccagaatg ctgggccctg aggagaagtc acattgagcc
     7081 cggctttcac agcagagaaa agagggaaat gacttgccca cagtcataca gctgagttgt
     7141 ggctgagctg ggacccggat aaaccgtcct gacttcaagt tcagcacgat gggttctagc
     7201 gacatgttta agcataggaa tccttttgga ttttgtacct ctgtttcctt tgatgccatt
     7261 ccctaaccct tctagataac tacctggatg ctgctcttca gccaatccag ctgtcagccc
     7321 tgcccaggaa cgagtgctgg gtgctcccgg gatgctgaaa ggttagctgt agaattttta
     7381 ccaggtaccg ttatttcttc acactgcctc acctttgtct ctcccccacc ccttcgtatt
     7441 gtagtcagcc tcaccctccc accccagggc tgtattccaa cccctcttcc tgttaagtac
     7501 aatttccatc atacgctctt tcaagtgatt tttattttat ttttcaataa atcaatttaa
     7561 aaatgga
//
