LOCUS       XM_008761617            2351 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus neurexophilin 2 (Nxph2), partial mRNA.
ACCESSION   XM_008761617
VERSION     XM_008761617.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008761617.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008761617.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 2% of CDS bases
            ##RefSeq-Attributes-END##
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..2351
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            <1..2351
                     /gene="Nxph2"
                     /note="neurexophilin 2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 17 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:679932"
                     /db_xref="RGD:1598138"
     CDS             <1..834
                     /gene="Nxph2"
                     /codon_start=1
                     /product="neurexophilin-2"
                     /protein_id="XP_008759839.3"
                     /db_xref="GeneID:679932"
                     /db_xref="RGD:1598138"
                     /translation="LLESKSSHFFLPYQSVFIFKPCPNVFFFLFLLQLFCDSEKVIRT
                     SESVDWEDRTVPGTLVRNVVHSRITSPVHLFVKQPLGSKPAYADNLENFGDWLANRTE
                     IQEPLARTKRRPIVKTGKFKKMFGWGDFHSNIKTVKLNLLITGKIVDHGNGTFSVYFR
                     HNSTGLGNVSVSLVPPSKIVEFEVSTQSSLETKESKSFNCHIEYEKTDRAKKTALCNF
                     DPSKICYQEQTQSHVSWLCSKPFKVICIHIAFYSIDYKLVQKVCPDYNYHSETPYLTS
                     G"
ORIGIN      
        1 ttgctggaat ctaaatcatc tcacttcttt ttgccttatc aatctgtgtt tatattcaaa
       61 ccctgtccca acgtattttt ctttcttttt ctcctacagc tattctgtga cagtgaaaaa
      121 gtgatacgta cctcagagag tgtggactgg gaagacagaa ctgttcctgg aacgttggtt
      181 agaaatgtgg tacattcaag gattaccagt cctgtgcatc tctttgttaa acagcctctg
      241 ggttcaaagc cagcatatgc agacaatttg gaaaactttg gggattggct ggcaaacaga
      301 acagagattc aagagccact agcaagaact aaaagacggc caatagtgaa gacaggaaaa
      361 tttaagaaaa tgtttgggtg gggtgacttc cattctaaca ttaaaactgt caaacttaac
      421 ctgctcatca caggaaaaat tgttgatcat ggaaatggaa catttagtgt ttatttccgg
      481 cacaattcaa caggcctggg caatgtttca gtgagcttgg tacctccctc taaaatagta
      541 gaatttgaag tgtccaccca gtcttccttg gagactaagg aatccaaatc ttttaactgc
      601 catattgagt atgaaaaaac agatcgggca aagaagactg ctttgtgcaa ttttgaccca
      661 tccaaaatct gttaccagga gcagactcaa agtcatgtgt cctggttatg ttccaaacca
      721 tttaaagtca tctgcattca cattgccttt tacagtattg attataaact tgtacaaaag
      781 gtttgtcctg actacaatta ccatagtgag acaccatact taacttctgg ataaatcttt
      841 tctcagtaat agaaatgaaa ttttcatgtc aatttaccta gaatgccaat aaaacaggcc
      901 cagctttccc tgacaaaaga cccttctatt tctggcaata gactgtaatt acttgtccat
      961 atttcacatt aaaatatata ttcaaatgag aagttgattt attttggtga tattatcctt
     1021 atctaaaaag ttaaacagat tgtaaaaaac catcattttc atgtaagatg gtaacattct
     1081 ggaaatgttg cttctctgta agaagcatca gcagtagcca tgtgtaaaag gaggaaccaa
     1141 attgtgcatg tgataagcac tgttcttcaa acagttcaat tgtgcatgtg atgagcctgt
     1201 ctttgatgtg ttttagaaag tttcaaagag taggttcagt aaaataattg agaagatggt
     1261 gtttaagaga tggattgtgt ttctggtatt gaactgtttt ttaaaattac tatctcttga
     1321 tgtcaatttt aatagctaca atgtcacaag aaaatcaaac acaatactat ctgagcagtc
     1381 tgcatagaca atgattgaag cactttacta ttatgattct catttgagtg gtattgaaac
     1441 ataccacttg ggtactagat aagcaaatgt aggtgtaagt caactcaaca ataatgaaga
     1501 tgatatttgt agacacttca gtgttgcaga ttcttttttt taattcttat tcacattaaa
     1561 gtaaggactt cagtcccatt atttgatagt ctgattttat atatacattt gtggaacaat
     1621 tctgaaattg aaagaaagta tttctgggca aaaccattcc acagtcatgg actcattatt
     1681 tgtaggccct cagattaggt tttctttgca tttgttatca ccaaaatgag aataagagtt
     1741 ctatgtagaa ataattagtt acatttgagt atttctaaaa aataagtact gatatttaca
     1801 atgcctgtat cactgacatt ttgagattac tttactctca gtgtcctcat cttcgagaag
     1861 agttgaatga ccatctttag gatgggtaat gagactgaat gagaacagat aaagggaaga
     1921 agactggtag gactcgagac ttgtagttag tctcctctaa tagatattaa cttctactta
     1981 aatactcatc tgtacagtgt taaacaagta aaatacttaa ataggactca tttaaggtaa
     2041 gtcctaacca acaaatgtac tcttatcaca ttgttcagaa agcctacagc tttgttctgt
     2101 actttacatc tctattctgt ccttttcctg gaaatactta ttgtgtctta ctttgtcttt
     2161 tgtacaagtt gtgctgggct tgtaaatggt agaccatgtt tgatatttct cctttagatc
     2221 attgggtgct tgattttgtt gttagtaaat aatattttga ggcatcttct atgttcatct
     2281 agaaacatga acaaatagtg tttgttgtaa actatgtgtg aacatatata cttggaattt
     2341 tcttcacaca a
//
