LOCUS       NM_001271341            1736 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus nucleoredoxin-like 1 (Nxnl1), mRNA.
ACCESSION   NM_001271341 XM_003751574
VERSION     NM_001271341.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1736)
  AUTHORS   Wolloscheck,T., Kunst,S., Kelleher,D.K. and Spessert,R.
  TITLE     Transcriptional regulation of nucleoredoxin-like genes takes place
            on a daily basis in the retina and pineal gland of rats
  JOURNAL   Vis Neurosci 32, E002 (2015)
   PUBMED   26239254
  REMARK    GeneRIF: This study demonstrated that daily regulation of Nxnl1 is
            driven by a circadian clock in the retina and pineal gland of rats.
REFERENCE   2  (bases 1 to 1736)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Sep 1, 2022 this sequence version replaced NM_001271341.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AI716631.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-399               JAXUCZ010000016.1  18310246-18310644   c
            400-1736            JAXUCZ010000016.1  18304587-18305923   c
FEATURES             Location/Qualifiers
     source          1..1736
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p14"
     gene            1..1736
                     /gene="Nxnl1"
                     /gene_synonym="Txnl6"
                     /note="nucleoredoxin-like 1"
                     /db_xref="GeneID:306342"
                     /db_xref="RGD:1308296"
     exon            1..399
                     /gene="Nxnl1"
                     /gene_synonym="Txnl6"
                     /inference="alignment:Splign:2.1.0"
     CDS             74..727
                     /gene="Nxnl1"
                     /gene_synonym="Txnl6"
                     /note="thioredoxin-like 6"
                     /codon_start=1
                     /product="nucleoredoxin-like protein 1"
                     /protein_id="NP_001258270.1"
                     /db_xref="GeneID:306342"
                     /db_xref="RGD:1308296"
                     /translation="MVSLFSGRILIRNNSDQDEVETEAELSRRLENRLVLLFFGAGAC
                     PQCQAFAPVLKDFFVRLTDEFYVLRAAQLALVYVSQDPTEEQQDLFLRDMPEKWLFLP
                     FHDDLRRDLGRQFSVRQLPAVVVLKPGGDVLTSDATDEIQRLGPACFANWQEAAELLD
                     RSFLQPEDLDEPARRSITEPLRRRKYRVDRDAGRGRGRNECDSRNPQGGAGAGTELW"
     exon            400..1736
                     /gene="Nxnl1"
                     /gene_synonym="Txnl6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagaatccag tcagcaggcc ccaggcctca tctaatccct ctccaggtcc ccagtccctc
       61 acatgctgct accatggtgt ctctcttctc tggccgcatc ttgatcagga acaacagcga
      121 ccaggatgaa gtggagacag aggcagagct gagccgccgg ttagagaatc gtcttgtgct
      181 actgttcttc ggtgctgggg cctgtcccca gtgccaggcc ttcgccccag tcctcaaaga
      241 cttcttcgtg cggctcactg atgagttcta cgtgctacgg gcagcacagc tggccctggt
      301 ctatgtgtcc caggacccta cagaggagca acaggacctg ttcctccggg acatgcctga
      361 aaagtggctc ttcctgccgt tccatgatga cctgaggaga gacctcgggc gccagttctc
      421 cgtgcgtcaa ctgccagcgg tcgtggtact caagccaggc ggggacgtgc tgacgagcga
      481 cgccacggac gaaatccagc gtctgggacc cgcctgcttc gccaactggc aggaggcggc
      541 agagctgttg gaccgcagct tcctgcagcc ggaggacctg gatgagcccg cgcggcgcag
      601 catcacggaa cctctgcgtc gtcgcaagta ccgcgtagac cgggatgctg gccgggggcg
      661 gggccgaaac gagtgcgact ctagaaatcc ccaggggggc gcgggtgcag ggacggagct
      721 ctggtgatcc cccccgcccc ccagggtacc cgggtgcact ggtggaactt tggtgacctc
      781 caggggaact cgggtgtagg ggcaaggctc ggattattct tttcctcttc caagttcact
      841 atgttcccta gacagcaacc caggctggcc ttgaactcac cattctcctg cctcagcgta
      901 aaagtagctg gaatgacagc caaagagaga caagagtttt ctcttccagg tctcctctag
      961 tccttgaaag aacgtggatt cccacgaaca gataccctca ggaatatacc caggtcttag
     1021 tgcatgctaa gcactaagaa cccatagaac accagactca aaactcccat ccaaaacaaa
     1081 agaaacaaaa acagtcttgc caggagcact ttgtggtgca cctattactc agcgctctgg
     1141 gcgcaggaga gggccagcaa gttgattctg tgcagaaaga cgcttgctgt caagactgac
     1201 aacccgagtt caagtcccag aacccacaga gtggaagaga gaactgactt ccacaaatcg
     1261 ttgacctcta cagttatggt tgtaagtaca tgcacacaca gtgacaaatg agtatatcta
     1321 acaaaaatag taggggtttg ttttgtttta tttcatgaca gggtctctgt atagccctgg
     1381 ctgtcctcga atttgttttt gtataccagg ttggccgtca aactcagact cccctgcctc
     1441 tgccttccca gtgctgggat taaaggcatg caccaccacc gcctacaaaa caaaaaaaaa
     1501 gaaaagaaag aggtatgtgt gcagaaggat ccagaggtca aggcggtttt tcgccacgta
     1561 gtgagagctc taggtcggcc gcggcaaggt gagatctcga tctaagccat tgattgattg
     1621 actgcctccg agacttccag acttgtttat ttcaagcacc caagcgggtg ggatgttttc
     1681 gctttgcccg cggcgtcccc tggcggccca atcgggatag tgcgtgagaa tgagat
//
