LOCUS       XM_039100158            2978 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nuclear RNA export factor 5 (Nxf5),
            mRNA.
ACCESSION   XM_039100158
VERSION     XM_039100158.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 3% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2978
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2978
                     /gene="Nxf5"
                     /note="nuclear RNA export factor 5; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 9
                     Proteins, and 97% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:680025"
                     /db_xref="RGD:1596862"
     CDS             831..2696
                     /gene="Nxf5"
                     /codon_start=1
                     /product="nuclear RNA export factor 2-like"
                     /protein_id="XP_038956086.1"
                     /db_xref="GeneID:680025"
                     /db_xref="RGD:1596862"
                     /translation="MSSFQEVSGNKNLYDEFHLDTVLPPQLQDNDGNMQIMDANGDPQ
                     MLYEQQLKSSLESLESSYTFSVKEDCGTTYSACQEKTLSDEEMNRSILGEVFERWFKI
                     TIPNGKKYNKMWLINLLQSYCSMGFTPVDFQYIRNGIQFFVQSTKTAVELMNINYQIS
                     DEENKKISIYVNSSSEPASVHYKLTAAQMHSLKLSMKKRYDVSKKALYLGKLRFDQDL
                     MDHGIDMFLNRRSCMTAALQIIQENFPELLSLNVSNNKIYWLDGLSELIEKAPHVKTL
                     NLSRNLLRTAWELEKIRGLNLEQLWLEGNPLCSTFPDHSSYVSAILNYFPELSHLPTG
                     FPAPFHTCLLFLFQSLLYLLGHHMSCPPSVPLISYFLQDGRKLFPTIDINTLEIIKPR
                     KESYKGSECLKNLLVQFMLQYYLIYDYGDRHSLLNAYHANACFSLAITFNSDKADMSS
                     LEDYLKDNRNMKMLTNSFLRMQLLKHKKYNIVTCLHELPKTQHDLNSYVVDICVQTEK
                     MICFSVNGVFKEVEGKSWGSVRAFTRTFILTPDRHFRLCIVNDEMILRNANPAEARKA
                     FSTTRPTVSYTQSCWNTHTDLKYCKNKWKCIREDEALFTFQSEERSSSEFFRYKF"
ORIGIN      
        1 ccttaaatcc cagcactcag gagccagagg caggtggatc tctgatttcg agtccagtct
       61 gatcttcaaa gtgagttcca gggcagctaa gtatacacag agaaaccccg gtcttggaaa
      121 aataaacaga acaacaacaa agacagtgaa gagatggctc atcagttaag agcactgata
      181 gagaacttgg gttcaatgac gtgggatcct tcatcctcct ttgacttctg agagcaccag
      241 gcacttccga atcacctcca gatagactcc tgcacctcac taaaccatca caatttgtgg
      301 gagcaaaggt agcgagtgat gttgtagtta ggcttgagtt gcacaaaaag cagtatctag
      361 tcactggcca caggcctcca gatcccaagg agtcaccttc aaaagcatac agaatgtaag
      421 aaaccgttac cttttgtagg cctctctaat gtaaagaacg acttttgcag ggttgctaaa
      481 tttgacaaat agcccttgca ggcctccgtc tgctgcgaac tccatcagca gccattgtag
      541 taggcgccct gaacattcca gtgctagtga acacagagtg aaagcaagta cagaaagtta
      601 ctgttacttt tcctttcccc gccctcaccc ctcacctcaa gccttgttgg agaaggcatc
      661 cgtccgccat tgcctctcgt caatgcccct tgccaacttc ccagatctct aaggcaccag
      721 atcctcacta cacagtgtga agacagtgct gaagagtcgc tgccttcaga agatagacag
      781 ttgtggaaca aaaccatgag aaattttctc tccaagtaaa ggagagagat atgagttctt
      841 tccaagaagt ttctggaaac aagaaccttt atgatgaatt tcatctggac acagttttac
      901 caccacaact ccaggacaat gatggaaaca tgcagataat ggacgccaat ggggaccctc
      961 aaatgttata tgagcagcaa ttgaagtcct ccttggagag cctagagagc tcttatacct
     1021 tcagtgtcaa agaagattgt ggtacaacat attcagcatg ccaagagaaa actctttctg
     1081 atgaagaaat gaacagaagc atactgggtg aagtctttga gaggtggttc aagatcacga
     1141 ttccaaatgg gaaaaagtac aacaagatgt ggttaataaa tttactccag agttattgca
     1201 gtatgggctt cacaccagtt gatttccagt acatcagaaa cggtatccaa ttctttgttc
     1261 aaagtaccaa aactgctgtt gaactgatga atataaacta ccagataagt gacgaggaga
     1321 acaaaaagat ttctatctat gtgaattcat ctagtgagcc tgcatctgta cactataagt
     1381 taacagcagc acaaatgcac agcctaaagc tgagcatgaa gaaacgatat gatgtctcta
     1441 agaaagctct gtacctcgga aagcttcgct ttgaccaaga cttgatggat catggaattg
     1501 acatgtttct gaacagaaga agctgcatga ctgctgccct tcaaatcatc caagagaatt
     1561 tccccgagct gttgtccttg aacgtgagca acaacaaaat atactggcta gatggcctgt
     1621 cggaattaat agagaaagcc cctcacgtca agactctcaa cctttcaaga aatttgctaa
     1681 gaacagcatg ggaactggag aagataagag ggctgaatct ggaacagctg tggctagaag
     1741 ggaatccctt gtgcagcacc ttcccagacc attcttctta cgtaagtgcg attctgaact
     1801 attttccgga gttgtcacac ttacccacgg gatttcctgc gccatttcac acctgtctct
     1861 tattcttgtt ccaaagcctt ctttacctcc ttgggcatca tatgtcatgt cccccatctg
     1921 tgcccctaat atcttacttc ctgcaggatg gcaggaaatt attcccaaca attgacatta
     1981 acaccttgga aataataaaa ccacgcaagg aaagctacaa aggatctgag tgtctgaaga
     2041 atctgctcgt gcaatttatg cttcagtatt acttgatcta tgactatggt gatcgacaca
     2101 gtctcctaaa cgcttaccat gcaaatgcct gcttctccct ggccatcact ttcaactccg
     2161 ataaggcaga catgagcagc ttagaagact acctcaaaga taataggaat atgaagatgc
     2221 tgacgaactc ctttttgcgg atgcagctgc tgaagcacaa aaaatataac atcgtgacct
     2281 gcctccatga actgccaaaa acacagcatg atttaaattc ctatgtagta gacatttgtg
     2341 tccagacaga aaaaatgatc tgcttctctg tcaatggagt attcaaggaa gtggaaggaa
     2401 agtcttgggg aagtgttcgg gccttcaccc ggacattcat cttaactcct gacaggcatt
     2461 tcagactgtg cattgtgaat gatgagatga ttttgaggaa tgccaaccct gcagaggcaa
     2521 ggaaggcctt ctctaccact aggcccacag tatcctacac ccagagttgc tggaacaccc
     2581 acactgatct aaagtattgt aagaacaagt ggaaatgcat cagagaggat gaagccctct
     2641 ttacattcca gagtgaggaa agatcctcaa gtgaattctt cagatacaag ttctgaaagg
     2701 agcccttgga aattatcttc ctcttcatcc acattattgt ttgtttgttt ctttctaagt
     2761 cattcacctg gccagaatta gaggtcaggt aaccaagaaa ttaaatatac ataggccatg
     2821 taataaccac tcacagggcc aattgcttta tatataccac ccatgaagag gatttgtgct
     2881 cccataataa aaagcatgct gaatcttgtg tcctgaatcg cacttttcct gctacatggg
     2941 aatcaaggcc taagggccct gtgtatccaa actttcat
//
