LOCUS       XM_006234257            2021 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nucleoporin 62 C-terminal like
            (Nup62cl), transcript variant X3, mRNA.
ACCESSION   XM_006234257
VERSION     XM_006234257.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 31, 2024 this sequence was replaced by
            NM_001427605.1.
            
            On Jan 21, 2021 this sequence version replaced XM_006234257.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2021
                     /gene="Nup62cl"
                     /note="nucleoporin 62 C-terminal like; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 13 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     9 samples with support for all annotated introns"
                     /db_xref="GeneID:300923"
                     /db_xref="RGD:1564353"
     CDS             228..1049
                     /gene="Nup62cl"
                     /codon_start=1
                     /product="nucleoporin-62 C-terminal-like protein"
                     /protein_id="XP_006234319.1"
                     /db_xref="GeneID:300923"
                     /db_xref="RGD:1564353"
                     /translation="MFPSTPYVPACMASQELSSTTSTTTTTTVTTNTTTTITSGFNLY
                     LTPPASSPWLNNTGLINMASLPSTMTVNSIVTPVMTYGPLDSMVNNWHYQLQEQEKHY
                     FYQAHQFNVWNHALIETSNEIALLHNEVERVKRDQSRLEQELDLILLQQKELEHTLAP
                     IEEFLKEQNGPLKLLYVNKEYEMIYRLAEVIDADLKRMSQDLKDIIIYLNSVIRPADA
                     SEPLEQICRILSAHLESLQWISHNSGIMHKKVEEVAKAFEEYRRKGQDAMNVAFE"
ORIGIN      
        1 tagcgagctt gcacagccga ggaggtaaga gcaggacatt aacatttgct ccgcaggctt
       61 ttcgcggcga gcttttccgc cgccccccgc tccaacctcc cacccctacc cggtcgcgaa
      121 ttcccggtct gggaattcag taccttcagc ggatcgcgag cggcggacac agaaaggtct
      181 actccaagat ctactctgtg gacaccactg agattttgag cactaagatg ttcccttcaa
      241 caccatatgt tcctgcctgc atggcttctc aggaactctc atccacaacc tcaacaacta
      301 caactaccac ggtcaccacc aataccacta ccacaattac aagtggcttc aacctgtatc
      361 tgacaccacc tgcatcatca ccatggctta acaacactgg cttaatcaat atggcttctc
      421 tgccttctac catgaccgtg aactcaatag tgactcctgt gatgacatat ggtcctctgg
      481 atagcatggt gaacaactgg cactatcagc ttcaagaaca agaaaaacac tacttttatc
      541 aggctcacca attcaatgtt tggaaccatg cactgattga gaccagtaat gagattgctc
      601 ttttgcacaa cgaagtggaa agagtgaaac gggatcagag caggttggaa caagaattgg
      661 atcttatcct gctccagcag aaggaactgg aacatacctt ggctcccata gaggagtttt
      721 tgaaggagca gaatggtcct cttaaactgc tgtatgtgaa taaggagtat gagatgattt
      781 atagactggc tgaagtcata gatgctgacc tgaaaaggat gtctcaagat ctcaaggaca
      841 tcattattta cctgaattca gtgattcgtc ctgctgatgc ttctgaacca ctggagcaga
      901 tctgcaggat tctgagtgct catctggagt ctctgcagtg gatcagccat aattcaggca
      961 taatgcataa gaaggtagag gaggttgcaa aggcatttga ggagtaccgt cgcaaggggc
     1021 aagatgccat gaatgttgcc tttgagtaac tgaagatacc atgaagaaga ttgcctttga
     1081 ataactatcg ctccaaatta ctccttttgg attattcatt aaccctaaat tctgatgata
     1141 ttaaatagag tagtattttc agttactact taatttttga ttgcaataat ttgtgcatgt
     1201 gtttttcatt tagataatgt gaagagaagt gtgctttttt tctttcagaa tggaataaag
     1261 tctggacaca gtgatagtaa tgcctacaca gaattaagta acccccttgt gggtattgat
     1321 tctgtgtgta taatacctgt cttattcaga ttctgcatac tgtcactagt gcacatcaac
     1381 ttcttactgc agcttaattg tggccagttg tttgccaaaa tgcacgtgtc acccagtctt
     1441 tactgggtgt ttgtggccgt tcatagaaag tgctggatcc tgtaaagtct caagtgaaat
     1501 ttactatcta ctctgagata taattttacc tgttaaggga aatatgggca atgaaaaaac
     1561 aagtgtatga caaattacag caagtgtctt tcaggagctc acagatgata atgcggtttt
     1621 atggattaga gatttcattt gggctttgat ttttctaatg gtactagaga tcaaaccatg
     1681 tgccacactc ttggataata tacccagcac tgtattatgg gtaaggtcca atgatccact
     1741 tacttttgac aatatacctc agtgcttttg tttctaaatc aagatctcac tgtagcctat
     1801 gctggcttgg aacttacaat cctcctgcct cagttttaca agtgccacta tacctaggta
     1861 tcctggtgat ttttgtcatt tgttttgttt tagcatatga tttagttttc tgtctgtaaa
     1921 gaaaaaagct gccttcttag ctctaaaaca tcttcatctc ttgtgtttca tccaagttgc
     1981 taataatgat gtcctaaaaa tgaaaataaa gtgattaaaa g
//
