LOCUS       NM_001401290            1267 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus nucleoporin 43 (Nup43), transcript variant 1,
            mRNA.
ACCESSION   NM_001401290 XM_006227622
VERSION     NM_001401290.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1267)
  AUTHORS   Bonnet,A. and Palancade,B.
  TITLE     Regulation of mRNA trafficking by nuclear pore complexes
  JOURNAL   Genes (Basel) 5 (3), 767-791 (2014)
   PUBMED   25184662
  REMARK    Review article
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1267)
  AUTHORS   Glavy,J.S., Krutchinsky,A.N., Cristea,I.M., Berke,I.C., Boehmer,T.,
            Blobel,G. and Chait,B.T.
  TITLE     Cell-cycle-dependent phosphorylation of the nuclear pore Nup107-160
            subcomplex
  JOURNAL   Proc Natl Acad Sci U S A 104 (10), 3811-3816 (2007)
   PUBMED   17360435
REFERENCE   3  (bases 1 to 1267)
  AUTHORS   Loiodice,I., Alves,A., Rabut,G., Van Overbeek,M., Ellenberg,J.,
            Sibarita,J.B. and Doye,V.
  TITLE     The entire Nup107-160 complex, including three new members, is
            targeted as one entity to kinetochores in mitosis
  JOURNAL   Mol Biol Cell 15 (7), 3333-3344 (2004)
   PUBMED   15146057
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Feb 7, 2022 this sequence version replaced XM_006227622.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158756.1, SRR26360190.106936.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-147               JAXUCZ010000001.1  3968466-3968612
            148-270             JAXUCZ010000001.1  3968919-3969041
            271-348             JAXUCZ010000001.1  3970002-3970079
            349-529             JAXUCZ010000001.1  3970886-3971066
            530-665             JAXUCZ010000001.1  3973074-3973209
            666-817             JAXUCZ010000001.1  3974515-3974666
            818-940             JAXUCZ010000001.1  3975762-3975884
            941-1267            JAXUCZ010000001.1  3977944-3978270
FEATURES             Location/Qualifiers
     source          1..1267
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1p13"
     gene            1..1267
                     /gene="Nup43"
                     /note="nucleoporin 43"
                     /db_xref="GeneID:683983"
                     /db_xref="RGD:1596513"
     exon            1..147
                     /gene="Nup43"
                     /inference="alignment:Splign:2.1.0"
     CDS             28..1164
                     /gene="Nup43"
                     /note="isoform 1 is encoded by transcript variant 1;
                     nucleoporin Nup43"
                     /codon_start=1
                     /product="nucleoporin Nup43 isoform 1"
                     /protein_id="NP_001388219.1"
                     /db_xref="GeneID:683983"
                     /db_xref="RGD:1596513"
                     /translation="MEEIYAKFVSQKISKTRWRPVPSGSLQTTETFATGSWDNEENCV
                     SLWSIGEFGNLDSDGGFEGDHQLLCDIRHHGDVMDLQFFDQERIVAASSTGCVTVFLH
                     HPNNQTLSVSQQWPTAHYHTGPGSPSYSSAPCTGIVCDNPEIVTVGEDGRINLFRVDH
                     KEAVRTIDNADSSTLHAVTFLRTPEIVTVNSIGQLKIWDFRQQGSEPCQILSLTGDRV
                     PLHCVDRHPDQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPDH
                     LFTCSEDGSLWHWDASTNAPEKSSLFHQGGRSTFLSHSSNQASVHLSLVSSWLSTDPA
                     KDRIEITSLLPSRTLSVNSLDVLGPCLVCGTDAESIYVTRQLFS"
     exon            148..270
                     /gene="Nup43"
                     /inference="alignment:Splign:2.1.0"
     exon            271..348
                     /gene="Nup43"
                     /inference="alignment:Splign:2.1.0"
     exon            349..529
                     /gene="Nup43"
                     /inference="alignment:Splign:2.1.0"
     exon            530..665
                     /gene="Nup43"
                     /inference="alignment:Splign:2.1.0"
     exon            666..817
                     /gene="Nup43"
                     /inference="alignment:Splign:2.1.0"
     exon            818..940
                     /gene="Nup43"
                     /inference="alignment:Splign:2.1.0"
     exon            941..1267
                     /gene="Nup43"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgctgaacc ttcttgctgg cttcagcatg gaggaaattt atgctaagtt cgtgtctcag
       61 aaaattagca aaacccgctg gcggccagtg ccttccggaa gcctgcagac cacagagacc
      121 ttcgccacgg gctcctggga caatgaggaa aattgcgttt cactgtggtc tattggagag
      181 tttggaaact tggattctga cggagggttt gaaggagacc atcagttatt gtgcgatatc
      241 agacatcatg gggatgtcat ggacttacag ttttttgacc aggaaagaat tgtagctgct
      301 tcgtcaacag gatgtgtaac agtttttctt caccatccaa ataaccagac cctgtccgtc
      361 agtcagcagt ggcctacagc tcactaccat acaggtcctg gcagcccttc ctatagcagt
      421 gcaccatgta caggaattgt atgcgacaat ccagaaatcg ttacagttgg agaggatggc
      481 cgaataaatc tcttcagagt tgatcacaag gaggctgtaa gaactataga taatgcagac
      541 agcagtacac tccatgctgt aaccttcctt cgaactcctg agattgttac agtaaattca
      601 attggacagt taaaaatatg ggatttcaga caacaaggaa gtgaaccctg tcagatatta
      661 tcactgactg gggaccgagt gccactccac tgtgttgaca gacatccaga ccagcagcat
      721 gttgtagcta ctggtggcca ggatggaatg ttgagtattt gggatgtcag acaaggtacc
      781 atgcctgtgt cattactgaa ggctcacgag gctgaaatgt gggaagttca cttccaccca
      841 tccaacccag atcacctgtt tacttgttct gaagatggat ccctctggca ttgggatgcc
      901 tccacaaatg cacctgaaaa gtcttctctc tttcaccaag gaggaagaag tactttcctg
      961 tcacatagca gtaaccaggc cagcgttcac ctgtccctag taagttcctg gcttagcaca
     1021 gatcctgcca aagaccgaat tgaaatcaca agcctgcttc ccagcaggac tctgtctgta
     1081 aacagtttag atgttttagg gccctgtctt gtttgtggaa ctgatgcaga atccatttat
     1141 gttaccagac aactattttc atgaaagtga aaaaaactta gttaccaatt ccaacgtctg
     1201 tgcaaacttt tatcattaga aagtggtatt tgtaaggaaa caataaactg ttaatgccag
     1261 tgcccaa
//
