LOCUS       NM_001109217            2435 bp    mRNA    linear   ROD 12-JUN-2023
DEFINITION  Rattus norvegicus nucleoporin 42 (Nup42), mRNA.
ACCESSION   NM_001109217 XM_001061365 XM_575328
VERSION     NM_001109217.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2435)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 2435)
  AUTHORS   Waldmann I, Spillner C and Kehlenbach RH.
  TITLE     The nucleoporin-like protein NLP1 (hCG1) promotes CRM1-dependent
            nuclear protein export
  JOURNAL   J Cell Sci 125 (Pt 1), 144-154 (2012)
   PUBMED   22250199
REFERENCE   3  (bases 1 to 2435)
  AUTHORS   Hagstrom SA, Watson RF, Pauer GJ and Grossman GH.
  TITLE     Tulp1 is involved in specific photoreceptor protein transport
            pathways
  JOURNAL   Adv Exp Med Biol 723, 783-789 (2012)
   PUBMED   22183407
REFERENCE   4  (bases 1 to 2435)
  AUTHORS   Farjot G, Sergeant A and Mikaelian I.
  TITLE     A new nucleoporin-like protein interacts with both HIV-1 Rev
            nuclear export signal and CRM-1
  JOURNAL   J Biol Chem 274 (24), 17309-17317 (1999)
   PUBMED   10358091
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474020.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_575328.2, XM_001061365.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ227080.1, FQ235245.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2435
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q11"
     gene            1..2435
                     /gene="Nup42"
                     /gene_synonym="Nupl2; RGD1560934"
                     /note="nucleoporin 42"
                     /db_xref="GeneID:499974"
                     /db_xref="RGD:1560934"
     exon            1..240
                     /gene="Nup42"
                     /gene_synonym="Nupl2; RGD1560934"
                     /inference="alignment:Splign:2.1.0"
     CDS             114..1370
                     /gene="Nup42"
                     /gene_synonym="Nupl2; RGD1560934"
                     /note="nucleoporin-like protein 2; nucleoporin like 2"
                     /codon_start=1
                     /product="nucleoporin NUP42"
                     /protein_id="NP_001102687.1"
                     /db_xref="GeneID:499974"
                     /db_xref="RGD:1560934"
                     /translation="MTICQFFLQGRCRFGDRCWNEHPGARGAAGARQPPPQQQPPSGG
                     NRRGWNAGSQRYSNVIQPSSFSKSTPWGGSRGQDKPPFGPFDSGASTSRGFGSPQNPF
                     ASPLSDEQKDEKKLLEGIVKDVEVWESSGQWMFSVYSPVRKKPNISGFTDISPEELRL
                     EYHNFLTSNNLQSYLNSVQQLVNQWRSRINELKNLNMSTKGALLSDLKDAVSQAAPAF
                     GFGSKQAGTFGSPGFPVNNSSSTTVQSFSFKTSPGLATAPSGNTSVFGSHPAFGAGPS
                     AGSAVSSSIPAFGLGKPEATSAASFSFKSPEASSFGSPGFSGFPAPMATSPFGPATAP
                     AFGSSVAAFGSPSPHSQTVFAKPCTDVFGGSSISSSVPASSAPDNALFTPRDQLTKEE
                     LEQFQSQKFTLGKIPLKPPPVELLTV"
     exon            241..463
                     /gene="Nup42"
                     /gene_synonym="Nupl2; RGD1560934"
                     /inference="alignment:Splign:2.1.0"
     exon            464..558
                     /gene="Nup42"
                     /gene_synonym="Nupl2; RGD1560934"
                     /inference="alignment:Splign:2.1.0"
     exon            559..635
                     /gene="Nup42"
                     /gene_synonym="Nupl2; RGD1560934"
                     /inference="alignment:Splign:2.1.0"
     exon            636..722
                     /gene="Nup42"
                     /gene_synonym="Nupl2; RGD1560934"
                     /inference="alignment:Splign:2.1.0"
     exon            723..807
                     /gene="Nup42"
                     /gene_synonym="Nupl2; RGD1560934"
                     /inference="alignment:Splign:2.1.0"
     exon            808..2435
                     /gene="Nup42"
                     /gene_synonym="Nupl2; RGD1560934"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggtcacaga acctgggcgc ggggagatga cgtcacacta gccggaccgc ggttgctgga
       61 gcttgggccc tcgcagctga ccgcgagtag ggacgggctg cgacggcgct acgatgacca
      121 tttgccagtt tttccttcaa ggccggtgcc gcttcggaga ccgctgctgg aacgagcatc
      181 ccggcgcccg gggtgcggcc ggggcccggc agccgccacc acagcagcag ccgccctcag
      241 ggggtaaccg tcgggggtgg aatgcaggca gccagaggta ctccaatgtc atccagccgt
      301 ccagtttctc caagagcacg ccctggggtg gcagcagagg tcaggacaaa ccgcccttcg
      361 gcccttttga ttctggagct tctaccagca gaggctttgg gtcacctcaa aacccttttg
      421 cctcacctct ctctgatgag cagaaagatg aaaagaaact tctggaagga attgttaagg
      481 acgtagaggt ttgggagtct tcagggcagt ggatgttttc tgtttactca ccagtgagaa
      541 agaaacccaa catttcaggt ttcacagaca tttcaccaga agagttgagg cttgagtacc
      601 ataacttctt aaccagcaac aacttgcaga gctatctaaa ctctgttcaa cagctagtaa
      661 atcagtggag gagtaggata aatgaactga aaaatctaaa tatgtcgacc aaaggagctc
      721 tgctctctga cttaaaggat gcagtcagtc aagcagcacc tgcgtttgga tttggaagca
      781 agcaagcagg gacatttggg tcaccaggtt ttccggtgaa taacagcagc agcactactg
      841 ttcagagctt cagttttaaa acaagccctg gactggccac tgctccttct ggaaacacct
      901 cggtgtttgg aagtcaccca gcctttgggg ctgggccctc tgctggctct gctgtctcgt
      961 cctccattcc agcctttgga cttgggaaac ctgaagccac atctgctgcg tcattttcat
     1021 tcaagagccc tgaagcttcc agctttggat cgcctgggtt ttcaggattt ccagctccca
     1081 tggcaacaag tccctttggc cctgccacag cccctgcctt tggaagttct gtggctgctt
     1141 tcggcagtcc tagcccacat tctcagactg tgtttgccaa gccttgcact gacgtgtttg
     1201 gaggtagcag catatctagc tctgtcccag cttccagtgc cccggataac gcgctgttca
     1261 cacccaggga tcagctgacg aaggaagaac tggaacagtt tcagtcccag aaatttaccc
     1321 tggggaaaat cccactgaag ccgccacctg ttgagcttct gactgtataa ggaccgggtg
     1381 caatacagaa agagtgcttt agccaggctc gctgtgcagc ctgcagtctg agaggctgag
     1441 cacccagaac gcctcacatt caggccagtg tgttcagcac agagtggtaa gagaccagca
     1501 gctctgtgtg ggaccttcaa agagaaagat ctgatggctt ttaaagcaat gtttttatag
     1561 tgctgggaat cactggggcc tcacccaggc aaggcgagta ctacctgacc catactccac
     1621 cctaactatg acttctgagg ttgtcttgat gagtttatgt gtatatggaa gctttcagta
     1681 atttgagaga tttaactttt ctaaacatct aggtaaataa aggacagcca aaaagtcaat
     1741 aagcaaggga aatattttgg gctgtaatta tgagtggaac tcatacagtg tattgaataa
     1801 agtaattttc accttcttcc agttcactat ctgccccttt ttatagggat gtggacagtg
     1861 gttgctgcag atcaaaccca ggcacagtgt cctgtgcatg ataggcaatt ctttgtcact
     1921 gagccacatc ccccaactct gacttgtgcc tgcctatgag gttacagatg gttgtgagcc
     1981 actgtataga ggtgctagga attgaactct agtcctcaac aacagtcctg agtttctgag
     2041 ccatctctcc aatcctaagc cctaactttt tacatggggg aaataaactg agtgggcgaa
     2101 gcagttgctg tgtatgtgag gacctgagtt gatacccagc acttagtcct cagcactgaa
     2161 gaagcagaga cgagtagatg ccagaactcg ctgagcagcg atttccagaa accctgtcag
     2221 aatctaagga tggagaactg atgggggaag acacccaaca ccaatctttg cccaccacac
     2281 atacctgtgc acaaacacac actcatatag tagaccagaa aaccaaatgg cttacccatt
     2341 gaaagatggg ccctccaaat gttcatgcat atgtgcaagg cattcagtcc ctgggatcct
     2401 tttaaacagt gtgatgccta tctaacttca gaggc
//
