LOCUS       NM_001004229            1539 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus nucleoporin 35 (Nup35), mRNA.
ACCESSION   NM_001004229 XM_215753
VERSION     NM_001004229.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Tarantino,C., Paolella,G., Cozzuto,L., Minopoli,G., Pastore,L.,
            Parisi,S. and Russo,T.
  TITLE     miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic
            stem cells
  JOURNAL   FASEB J 24 (9), 3255-3263 (2010)
   PUBMED   20439489
REFERENCE   2  (bases 1 to 1539)
  AUTHORS   Handa,N., Kukimoto-Niino,M., Akasaka,R., Kishishita,S.,
            Murayama,K., Terada,T., Inoue,M., Kigawa,T., Kose,S., Imamoto,N.,
            Tanaka,A., Hayashizaki,Y., Shirouzu,M. and Yokoyama,S.
  TITLE     The crystal structure of mouse Nup35 reveals atypical RNP motifs
            and novel homodimerization of the RRM domain
  JOURNAL   J Mol Biol 363 (1), 114-124 (2006)
   PUBMED   16962612
REFERENCE   3  (bases 1 to 1539)
  AUTHORS   Hawryluk-Gara,L.A., Shibuya,E.K. and Wozniak,R.W.
  TITLE     Vertebrate Nup53 interacts with the nuclear lamina and is required
            for the assembly of a Nup93-containing complex
  JOURNAL   Mol Biol Cell 16 (5), 2382-2394 (2005)
   PUBMED   15703211
REFERENCE   4  (bases 1 to 1539)
  AUTHORS   White,B.A., Preston,G.M., Lufkin,T.C. and Bancroft,C.
  TITLE     Detection of two chromatin proteins which bind specifically to the
            5'-flanking region of the rat prolactin gene
  JOURNAL   Mol Cell Biol 5 (11), 2967-2974 (1985)
   PUBMED   3837840
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC078914.1.
            
            On Sep 10, 2004 this sequence version replaced XM_215753.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC078914.1, SRR8487231.89378.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q24"
     gene            1..1539
                     /gene="Nup35"
                     /note="nucleoporin 35"
                     /db_xref="GeneID:295692"
                     /db_xref="RGD:1303069"
     exon            1..68
                     /gene="Nup35"
                     /inference="alignment:Splign:2.1.0"
     CDS             29..1006
                     /gene="Nup35"
                     /note="nucleoporin NUP53; 35 kDa nucleoporin; nuclear pore
                     complex protein Nup53; mitotic phosphoprotein 44"
                     /codon_start=1
                     /product="nucleoporin NUP35"
                     /protein_id="NP_001004229.1"
                     /db_xref="GeneID:295692"
                     /db_xref="RGD:1303069"
                     /translation="MAAFAVDPQAPTLGSEPMMLGSPTSPKPGANAQFLPGFLMGDLP
                     APVTPQPRSISGPSVGVMEMRSPLLAGGSPPQPVVPAHKDKSGAPPVRSIYDDISSPG
                     LGSTPLPSRRQANISVLQSPLVGVTTPVTGQSMFSPANIGQPRKTTLSPAQLDPFYTQ
                     GDSLTSEDHLDDTWVTVFGFPQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKL
                     QARKALSKDGRIFGESIMIGVKPCIDKNVMENSDRGVLSSPSLAFTPPIRTLGTPTQP
                     GSTPRVSTMRPLATAYKASTSDYQVISDRQTPKKDESLVSRAMEYMFGW"
     exon            69..239
                     /gene="Nup35"
                     /inference="alignment:Splign:2.1.0"
     exon            240..367
                     /gene="Nup35"
                     /inference="alignment:Splign:2.1.0"
     exon            368..422
                     /gene="Nup35"
                     /inference="alignment:Splign:2.1.0"
     exon            423..564
                     /gene="Nup35"
                     /inference="alignment:Splign:2.1.0"
     exon            565..634
                     /gene="Nup35"
                     /inference="alignment:Splign:2.1.0"
     exon            635..763
                     /gene="Nup35"
                     /inference="alignment:Splign:2.1.0"
     exon            764..928
                     /gene="Nup35"
                     /inference="alignment:Splign:2.1.0"
     exon            929..1511
                     /gene="Nup35"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccttgctgga gtggtggcgg ccgttgcgat ggcagcgttt gcggtggatc cccaggcgcc
       61 cacgctggga tctgaaccga tgatgttggg ttcacctaca tctccaaagc caggcgctaa
      121 tgcccagttc ttacctggat ttttaatggg ggacctacca gctccagtga ctccacaacc
      181 tcgatcaatt agcggccctt cagtaggagt aatggaaatg aggtcacctt tacttgcagg
      241 gggctcacca ccacagccag ttgtacctgc tcataaagat aaaagtgggg ctccacctgt
      301 tagaagtatc tatgatgaca tttccagccc aggacttgga tcaacacctc tgccttcaag
      361 aagacaggca aacatttccg tgttgcagag tcctcttgtt ggagttacaa ctcctgtgac
      421 tgggcaaagc atgtttagtc cagcaaatat tggtcaacca cgaaagacga cactgtctcc
      481 tgcccaactg gatccttttt atactcaagg agattctctg acttcagaag atcacctaga
      541 tgacacctgg gtgactgtgt ttgggtttcc acaagcatct gcttcttata tattattaca
      601 gtttgcacaa tacgggaata tcttaaagca cgtgatgtct aacacaggca actggatgca
      661 tattcgttac cagtctaaac tgcaagcccg gaaagcctta agcaaagatg ggagaatatt
      721 tggagaatcc atcatgattg gcgtcaagcc gtgtatagat aaaaatgtca tggaaaacag
      781 tgacagagga gtcttgtcat ctccatctct agcctttaca ccaccgatta ggaccttagg
      841 cactccaaca cagcctggaa gcactcctag ggtttctacc atgaggcctc ttgccacagc
      901 atacaaggcc tccactagtg actatcaggt tatttctgac cgacaaacac caaaaaaaga
      961 tgaaagtctt gtgtccagag caatggagta catgttcggt tggtagtgca gtgagagctg
     1021 gactgagcat tagcagagga ctgccagttt ccttgggtta gttgtataac catgtaacca
     1081 tgctggcagg gttgggtagc tatctcagat acatctttac agtcctttgt ttaaggagac
     1141 agctcatttg taacttgcac tttaaaagat ggccatgata cacctgaaga gaagccgtcc
     1201 agatggcact ctgtgctctg tgatacagtg catgcttagt gccgtgtcct cggcgtctac
     1261 tgcggtaatt aaatgattga gcttgaagtg agtctcattg gctttcatgg gaagatggat
     1321 gaattccaca gagcaacagc tgctttacca agacacagtg attatgatta gcagtttgaa
     1381 ttatggtctt aatttagata gtatttaata tctttgtata tgtcttgtgg attgtcatct
     1441 tttatgttct ttttaaaaac catctaccac taatgtttcc taataaactt tgtcaatttt
     1501 tatgtgctga aaaaaaaaaa aaaaaaaaaa aaaaaaaaa
//
