LOCUS       NM_001108620            6230 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus nucleoporin 205 (Nup205), mRNA.
ACCESSION   NM_001108620 XM_001065232 XM_342657
VERSION     NM_001108620.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6230)
  AUTHORS   Ghosh D, Lippert D, Krokhin O, Cortens JP and Wilkins JA.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   2  (bases 1 to 6230)
  AUTHORS   Krull S, Thyberg J, Bjorkroth B, Rackwitz HR and Cordes VC.
  TITLE     Nucleoporins as components of the nuclear pore complex core
            structure and Tpr as the architectural element of the nuclear
            basket
  JOURNAL   Mol Biol Cell 15 (9), 4261-4277 (2004)
   PUBMED   15229283
REFERENCE   3  (bases 1 to 6230)
  AUTHORS   Hase ME and Cordes VC.
  TITLE     Direct interaction with nup153 mediates binding of Tpr to the
            periphery of the nuclear pore complex
  JOURNAL   Mol Biol Cell 14 (5), 1923-1940 (2003)
   PUBMED   12802065
  REMARK    Erratum:[Mol Biol Cell. 2003 Aug;14(8):preceding Table of Contents]
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473959.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_342657.3, XM_001065232.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132265,
                              SAMD00132267 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..6230
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q22"
     gene            1..6230
                     /gene="Nup205"
                     /note="nucleoporin 205"
                     /db_xref="GeneID:362335"
                     /db_xref="RGD:1309413"
     exon            1..46
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     CDS             19..6045
                     /gene="Nup205"
                     /note="nucleoporin 205kDa"
                     /codon_start=1
                     /product="nuclear pore complex protein Nup205"
                     /protein_id="NP_001102090.1"
                     /db_xref="GeneID:362335"
                     /db_xref="RGD:1309413"
                     /translation="MAALLAVNSAASLWGPYKDIWQTVGNALWRRQPEAVHLLDMILK
                     KHKPDFISLFKNPPKNVQQHEKIQKASSEGVAIQGQQGTRLLPEQLIKEAFIISDLFD
                     IGELSAVELLLAGEHQQPHFPGLTRGLVAVLLYWDGKRCIANSLKTLIQSRRGKTWTL
                     ELSPELVSMTTRFTDELMEQGLTYKVLTLVSQIDVNNEFEKLQRDRGLGSEKHRKEVS
                     DLIKECRQSLAESLFAWACQSPLAKDDTLLLIGHLERVTVEANGSLDAVNLALLMALL
                     YCFDTSFIEQSTEERDDMIHHLPLLTERQYIATIHSRLQDSQPWKLPGLQATVRLAWA
                     LALRGISQLPDVTALAEFTEADEAIAELAIADNVFLFLSESVVLAENFYQEEFYIRRI
                     HNLITDFLAFMPMKVKQLKNRADEDARMIHMSIQMGNEPPISLRRDLEHLMLLIGELY
                     KKNPFHLELALEYWCPSEPLQTPTVMGSYLGVAHQRPPQRQVVLSKFVRQMGDLLPPT
                     IYIPYLKMLQGLANGPQCAHYCFSLLKVNGSSHVENIQGAGGSPVSWEHFFHSLLLYH
                     EHLRKDLPSADSVQYRHLPSRGITQKEQDGLIAFLQLTSTIITWSENARLALCEHPQW
                     TPVVVILGLLQCSIPPALKAELLKTLAAFGKSPEIAASLWQSLEYTQILQTVRVPSQR
                     QAIGIEVELNEIESRCEEYPLTRAFCQLISTLVESSFPSNLGAGLRPPGFDPYLQFLR
                     DSVFLRFRTRAYRRAAEKWEVAEVVLEVFYKLLRDYEPQLEDFVDQFVELQGEEIIAY
                     KPPGFSLMYHLLNESPMLELALSLLEEGVKQLDTYAPFPGKKHLEKAVQHCLALLNLT
                     LQKENLFMDLLRESQLALIVSPLEQLLQGINPRTKKADNVVNIARYLYHGNSNPELAF
                     ESAKILCCISCNSNIQIKMVGDFTHDQNVSQKLMAGFVECLDSEDTEEFVRVEEGSEL
                     EKKLAAIRHETRIHILNLLITSLERSPPNLALYLLGFELKKPISTTNLQDPGVLGCPR
                     TCLHAILNILEKGTDGRSGPVAVQACPQLAELCYQVIYQLCACSDTSGPTMRYLRTSQ
                     DFLFSQLQHLPFSNKEYEISMLNQMSWLMKTASIELRVTSLNRQRSHTQRLLHLLLDD
                     LPVKPYSDGEGGMEDENRSVSGFLHFDTATKVRRKILSILDSIDFSQEIPEPLQLDFF
                     DRAQIEQVIANCEHKNLQGQTVCNVKLLHRVLVAEVNALQGMAAIGQRPLLMEEISTI
                     LQYVVGRNKLLQCLHAKRHALESWRQLVEIILTACPQELIQAEDRQLIIRDILQDVHD
                     KVLDDEAAQELMPVVAGAVFTLTAHLSQAVRTEQKQPLVSGPAEAHYAFMLDSSFTSA
                     PAAESQPVGFASIGDSSLHIILKKLLDFILKTGGGFQRVRTHLYGSLLYYLQIAQRPD
                     EPDTLEAAKKTMWERLTAPEDVFSKLQRENMAIIESYGAALMEVVCRDACDGHEIGRM
                     LALALLDRIVSVDKQQQWLLYLSNSGYLKVLVDSLLEDDRTLQSLLTPQPPLLKALYT
                     YESKMAFLTRVAKLQQGSLELLRSGVIVRLAQCQVYDMRPEVDSHSMFGMRDPPIFIP
                     TPVDRYRQILLPALQLCQVILTSSMSQHLQAAGQVLQFLVSHSDTIQAILRCQDVSAG
                     SLQELALLTGIISKAALPGMLNELDVDVNEGSLMELQGHIARFQRQCLGLLSRFGGSD
                     RLRQFKLQEDNVEGDRLSKKDEIELAMQQICANVMEYCHSFMQQNSPNLQNAVCLFTP
                     SLSETVNRDGARQDTQVPVVPYWRLPGLGIIIYLLKQSASDFFSYYDSHRRSVNKLQN
                     VEQLPPDEIKELCQSVMPAGIDKISTAQKCVLARRRLVKLINNRAKLLSLCSYIIETC
                     LFILWRHLEYYLLHCTPMDSQDSLFASRTLLKSRRLQEPNLDFSRSGLAQVNQHDIDQ
                     LQSDAINAFGESLQKKLLDIEGLYSKVRSRYSFIQALVRRIRGLLRISRN"
     exon            47..189
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            190..361
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            362..506
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            507..666
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            667..895
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            896..1060
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            1061..1236
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            1237..1353
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            1354..1491
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            1492..1642
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            1643..1848
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            1849..2031
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            2032..2082
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            2083..2292
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            2293..2392
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            2393..2530
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            2531..2720
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            2721..2841
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            2842..2923
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            2924..3088
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            3089..3213
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            3214..3328
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            3329..3478
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            3479..3550
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            3551..3708
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            3709..3789
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            3790..3981
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            3982..4249
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            4250..4348
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            4349..4497
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            4498..4689
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            4690..4811
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            4812..4950
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            4951..5077
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            5078..5154
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            5155..5283
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            5284..5410
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            5411..5577
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            5578..5701
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            5702..5830
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            5831..5892
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
     exon            5893..6230
                     /gene="Nup205"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctcagtcct cctccaagat ggcggcgctg ttggcggtaa attcggctgc cagcctatgg
       61 ggaccctaca aggacatctg gcagacagtc ggaaatgctc tttggagaag acagcctgaa
      121 gctgtccacc tccttgacat gattttgaag aaacacaaac ccgacttcat ttcactattt
      181 aaaaacccac caaaaaatgt tcaacagcat gaaaagattc agaaagccag ttcggagggt
      241 gtcgccattc aggggcaaca aggaaccaga cttctccctg agcaactcat taaagaagca
      301 tttatcatca gtgacctttt tgacattggg gaattgtcag ctgttgagct tctccttgct
      361 ggagaacatc agcaaccaca tttccctggc ctcaccagag gattggtagc tgtcctttta
      421 tactgggatg gaaagcggtg cattgcaaac tctctcaaaa ccctaataca gtctagacga
      481 gggaagacat ggacattaga actcagtcca gagctggttt ccatgacaac acgctttaca
      541 gatgagctga tggaacaagg attgacttac aaagtcctta ctttggtgtc acagattgat
      601 gtgaataatg aatttgagaa actacagaga gacagaggtt tgggcagtga gaaacaccgc
      661 aaagaggttt ctgatctcat caaggagtgc aggcagtctc tggctgaaag tctttttgct
      721 tgggcttgcc agtcaccgtt agctaaagat gacaccctcc tgcttattgg acatttagaa
      781 agagtgacag tcgaggccaa cggctccctg gatgcagtaa atctggctct cctcatggct
      841 cttctgtact gttttgatac cagctttata gaacaaagca cagaggaacg agatgatatg
      901 attcaccacc ttcccctgtt gacagagaga cagtacattg ccacaattca ctctcgcctc
      961 caggactccc agccttggaa gctacctggg ctgcaggcca ctgttagact tgcctgggca
     1021 ctggcactga gggggatatc ccagctacct gatgtgacag ccctggctga gttcacggaa
     1081 gcagatgaag cgattgcaga actcgccatt gccgataatg tcttcctgtt cctcagcgag
     1141 tctgtcgtgc tggctgaaaa cttctatcag gaagagtttt atattcgcag aatccataat
     1201 cttattacag acttccttgc atttatgcca atgaaagtga agcagctgaa gaatcgggca
     1261 gatgaagatg ctcgaatgat tcacatgagt atacagatgg gtaacgaacc ccccatctca
     1321 cttagaaggg acctggaaca cttgatgctc ctgattggtg aactatataa aaaaaaccct
     1381 tttcatttgg agcttgctct ggagtactgg tgtccctcag agcctctgca gactcccacg
     1441 gtcatgggct cttacctggg agtagctcat cagcgccctc ctcagcgcca ggttgtcttg
     1501 tcaaagtttg ttagacaaat gggtgatctg ttgccgccaa ctatttacat tccttatttg
     1561 aagatgctcc agggcttggc caatgggcct cagtgtgccc actactgttt tagcctgctc
     1621 aaagtcaacg gtagtagtca tgttgaaaac attcagggag caggtggcag tcctgtttcc
     1681 tgggagcatt tcttccactc cttattgctc tatcatgagc atctccgaaa ggacctgcca
     1741 agtgcagata gtgtccagta ccggcacctt ccttcacgcg gcatcaccca gaaggagcaa
     1801 gatgggctga tcgcttttct ccagctgaca tctactatca ttacttggag tgaaaatgct
     1861 cgcctggcgc tctgtgaaca tccccagtgg actcccgttg tggtgatttt ggggctcctg
     1921 cagtgcagta ttcctccagc tctcaaagct gagctactga agacacttgc agcttttggg
     1981 aagtctcctg aaattgccgc ttctctctgg cagtcattgg agtacacgca gatactgcag
     2041 actgtcaggg ttccaagcca gaggcaagct attggtattg aggttgaact caatgaaata
     2101 gagtcccggt gtgaagagta tcccctgact agggcctttt gccagttgat cagtaccctg
     2161 gtggagagct cattcccttc taatctgggt gctggcctgc gcccccctgg ctttgaccct
     2221 tatttgcagt tcctgagaga ttctgtgttt ctccgattcc gtacaagagc ttaccggaga
     2281 gccgctgaaa agtgggaagt cgctgaggtt gtcctggaag tgttttataa gctgttgaga
     2341 gattatgagc cccagcttga agattttgta gatcagtttg tggagctaca aggagaagag
     2401 atcatagcct ataagccacc tgggtttagt ctgatgtacc atcttctgaa cgagtcaccg
     2461 atgttggaac ttgccctcag cttactggaa gaaggagtta agcagcttga tacctatgct
     2521 cctttccctg gaaagaaaca cctggaaaaa gcagttcagc attgcctcgc actcctcaac
     2581 ctcactctgc aaaaggagaa ccttttcatg gaccttctga gagagagtca gctggctctc
     2641 atcgtctcgc ctctggaaca gctcttgcag ggaattaacc ctaggactaa gaaggcagac
     2701 aatgtggtta acatcgccag gtatctgtat catggaaaca gtaatcctga attggcattt
     2761 gaaagtgcaa agatcctctg ctgtatctct tgcaattcca acattcagat caaaatggtt
     2821 ggcgatttca cacatgacca gaatgtgagc cagaagctga tggctggatt tgtagagtgc
     2881 ttggatagtg aagacacaga agaatttgta cgtgtagaag agggctcaga attagaaaag
     2941 aaattagctg caatccgtca cgaaacgaga atccacatct tgaatcttct catcacatct
     3001 ctagaacgca gtccacccaa tctcgccctc tacctgttgg gctttgaatt gaagaaaccc
     3061 atcagtacca cgaatctgca agacccagga gtactaggct gccctcggac gtgccttcat
     3121 gccatcctga acattctgga gaaaggcacc gacgggagga gcggccctgt ggccgtgcag
     3181 gcgtgtccac agctggccga gctgtgctac caggtgatat atcagttatg tgcatgctca
     3241 gatacatctg gtcctactat gaggtacttg agaaccagcc aggatttctt attttctcag
     3301 ttgcaacatc tacctttctc gaacaaagag tatgaaatct ctatgctgaa tcaaatgtca
     3361 tggcttatga agactgcctc aatagagcta agagtgacgt ctctgaatcg ccagcgctca
     3421 cacacacaga ggcttctgca tctcttactg gatgacctgc cggtgaagcc gtactctgat
     3481 ggtgaaggag gaatggaaga tgaaaataga tctgtctctg ggttccttca ttttgacact
     3541 gccacaaaag tgcgtcgaaa aattctaagt attcttgatt cgattgactt cagtcaggag
     3601 attcctgagc ctttgcagct ggattttttt gaccgtgccc agattgagca agtcattgcc
     3661 aattgtgagc acaagaattt acaggggcag acggtctgca atgtcaagct tcttcatagg
     3721 gttctcgtag ctgaagtcaa tgctcttcag ggtatggcag caataggcca gaggccgctg
     3781 ctgatggagg aaatcagcac tattcttcag tatgtcgtag gaagaaacaa gttgctgcag
     3841 tgtcttcatg caaagcggca tgcactggaa tcctggaggc agctggtaga aattatcctg
     3901 acagcttgtc ctcaggagct cattcaggca gaagatcggc agctgattat tcgtgacatt
     3961 ttacaagatg tgcatgataa ggtgctggat gatgaagccg cacaggagct aatgccagtg
     4021 gttgccggtg ctgtgttcac cctgactgct cacctaagcc aggctgtgcg cacggaacag
     4081 aagcagccat tggtctcagg acctgcagag gcccattatg ctttcatgct tgatagttct
     4141 ttcacctcag ctcctgcagc agagagccag ccggtgggct ttgcttctat tggagattct
     4201 tcacttcata tcatactgaa gaaactgttg gacttcattt tgaagacagg tggtggcttc
     4261 cagcgtgtaa ggactcacct gtatggctcg ctgctttatt acttacagat tgcccagaga
     4321 ccagatgagc cggacacatt agaagctgct aagaaaacta tgtgggaaag gctgactgcc
     4381 cctgaagatg tgtttagtaa attacagcga gaaaacatgg ctatcattga gagttacggc
     4441 gctgcgctca tggaggtggt ctgtcgagat gcttgcgacg gtcatgagat tggaaggatg
     4501 ctggccctgg ctctccttga tcggattgtc tctgtggaca agcagcagca gtggctcttg
     4561 tacctttcta acagtggcta tttgaaggtc cttgtagaca gcttgctgga agatgatcgc
     4621 actctacaga gcttgctgac tccacagcct cctctcttaa aagcccttta tacctatgag
     4681 tccaagatgg catttctcac aagagtggct aagctacagc aaggttcatt agaactccta
     4741 agatcagggg tgattgtgag gctggcacag tgccaagtct atgatatgcg cccagaagtg
     4801 gactctcata gcatgtttgg catgagagac ccaccaatat tcatcccaac gcctgtggac
     4861 cgataccggc agattctcct tccagccctc cagctatgcc aggtcatcct cacatccagt
     4921 atgtcccagc acttgcaggc agcagggcag gtgctgcagt ttctcgtttc acattctgat
     4981 accatccaag cgattctgcg ctgccaggat gttagtgctg gctctttgca ggaattagcc
     5041 ctgctgacag gaatcataag taaagcagcg cttcctggta tgttaaatga acttgatgta
     5101 gatgtaaatg aaggatcctt aatggagctc cagggacaca tcgcaaggtt tcagcgccag
     5161 tgcctaggcc tactgagtcg cttcggtggc tctgacagac tgcggcagtt taaactccaa
     5221 gaagataatg tggagggaga caggttgagc aagaaagatg aaattgagct ggccatgcag
     5281 cagatttgtg ccaatgtaat ggaatattgc cattcgttca tgcagcagaa ctcccctaac
     5341 ctccagaatg ctgtgtgtct cttcacccct agcctttccg agacggttaa cagagatgga
     5401 gcacggcaag atacccaggt tccagtcgtt ccatactggc gcctgcctgg cttgggcatt
     5461 attatctacc tgctgaaaca gagtgccagc gatttcttta gctattatga cagtcaccgt
     5521 cgcagtgtca acaagctgca gaatgtagaa caacttcctc cagatgagat aaaagagtta
     5581 tgccagtctg tgatgcctgc tggcattgat aaaatctcta cggcgcagaa gtgtgtctta
     5641 gcaagacggc gtctggtgaa gctgatcaac aaccgagcca aactgctgtc cctctgctct
     5701 tatatcatcg agacctgcct gtttattctt tggcgccatc tggagtatta cttgttacat
     5761 tgcactccaa tggattccca agattcactg tttgcctcta ggactttact taaaagcaga
     5821 agactacagg agcccaatct ggacttcagc agaagtggac tggctcaagt gaaccagcac
     5881 gatatagacc agctgcagtc tgatgccatc aacgcttttg gagaatcact gcaaaagaaa
     5941 ctgcttgaca tcgaagggtt gtattcaaaa gttcgatccc gctatagctt catacaggct
     6001 cttgtcagac gtatccgtgg tctgctgagg atatcaagga actgagaact gtgcttgctt
     6061 tctgattgga agagatgaac tgaggaaaac catctctttt tttatagatg actttatttc
     6121 taaattatga ccagaagata ttttgctatt tctttcttta tatatggaca tcttttctgt
     6181 aaacctctgc ttcatttcac cctctcttgt gaacaataaa atacttttta
//
