LOCUS       XM_008770806            2855 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nuclear GTPase, germinal center
            associated (Nuggc), transcript variant X1, mRNA.
ACCESSION   XM_008770806
VERSION     XM_008770806.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008770806.3.
            
            On Jan 21, 2021 this sequence version replaced XM_008770806.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2855
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2855
                     /gene="Nuggc"
                     /note="nuclear GTPase, germinal center associated; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:290325"
                     /db_xref="RGD:1562099"
     CDS             268..2658
                     /gene="Nuggc"
                     /codon_start=1
                     /product="nuclear GTPase SLIP-GC"
                     /protein_id="XP_008769028.1"
                     /db_xref="GeneID:290325"
                     /db_xref="RGD:1562099"
                     /translation="MEETEALEGAIPHSADCELFKEPVKKRRRSHHDWKFQAFPSAEQ
                     SALKEYEKLECRTRRVLSNTYQKLIQSVFLDDSIPSGLKYLINRLLALIEKPPLEPVY
                     VGFLGITGAGKSSLINALIQQAMFLPVSGESVCTSCIVQVSSGCCEQYEAKIHLLSDQ
                     EWKAELKDLTKLLHRAEWSGEEEAETWDRDDAAAEAARKLQMLYGHGADRKHYEDLLR
                     MKPRGRIPTSRTITLKAEEAGELSVKLDPFIRTQRRDWDGESAETPIWPLIKYVEVIL
                     PKSSLIPEGVVLVDIPGTGDFNSKRDEMWKKTIDKCSMIWVISDIERVSGGKAHEDLL
                     SESIKACQRGFCRDIALVVTKTDKLHLQEYLRERKMGNQAIQSQREAVLQRNEIIKLQ
                     RNKILKEKLKRKLPADSKVLEASDLVYTVSAHEYWQQALLTEEESEIPKLREYIRKRL
                     LDKKRRLVTKYVTEAFGLLLLTDTFNSEENLLTEQLNMGGLRQFVEEKMELLEKAIEQ
                     CFARIEQPLRTGVQVARASYRRILGACLVRSRGNQGFHQTLKAVCLKNGVYASRTLAR
                     IDLNEALSQPIYDQIDPVFGGIFRDGKPTAPALMQHIDAFKQSLEKRMAEIGVRSGWK
                     HDGYKRSFLIQEISAILGSLESHILRRKRKIYESVTSSIQNDLKPCYEEAAQITGKKA
                     CERMKDAIRRGVERQVAEGLFERAQERMWHQFRQLKPGITEKVKGSITTMLTLAAPQG
                     DGLYKELADVRNEQKEMEKLHRSLREVAENAQLRRGMQDFLLRMSPSKAGPHGTKL"
ORIGIN      
        1 tgaaatgcga gtgaaatgac ctgagtgtga agaagctggt ctgtgcagca taagtttggg
       61 ttggttcttc ctcccaccat cctccaccat tatgacctcg ctttgcaggg aagcagattc
      121 cggcatgggc tgtggaaggt tattttctct ttaagaccat gaacttggcc caggaaactg
      181 tttcagccac gctgctccgc cccttgggag ccctagtcac aggctggttt tcctaaggtg
      241 gaaaagaagc agctgaggca gccagaaatg gaagaaacgg aggctttaga gggtgcgata
      301 ccacactcag ccgactgtga actgtttaaa gaacctgtga agaaaagacg caggtctcat
      361 cacgactgga aattccaagc gtttccctct gcggagcaaa gtgctctaaa ggaatatgaa
      421 aaactggagt gtcggaccag gagggtttta agcaacactt atcagaagtt gattcaatct
      481 gtcttcctgg atgacagcat tcccagtgga ctcaagtacc tcataaaccg gcttcttgcc
      541 ttgattgaaa aacccccact ggagccggtc tatgtggggt tcttgggaat caccggagct
      601 ggcaagagct ctctgatcaa tgccctcatc caacaagcga tgtttctgcc agtgtctgga
      661 gaaagtgttt gcacatcatg catcgtacaa gtgagttctg gctgttgtga gcagtatgag
      721 gccaaaatcc accttctgtc tgatcaggag tggaaggcag aactaaagga cttgactaaa
      781 ctcctgcaca gagcagagtg gtccggggaa gaagaagcag agacatggga cagggacgat
      841 gcagcagcag aagccgcccg gaagctacag atgctctatg gccacggggc agacaggaag
      901 cactatgagg atttgctgag gatgaagccc agaggcagga ttcccacctc gagaaccatc
      961 actctaaagg cagaggaggc aggagagcta tctgtcaagt tggacccctt catcaggact
     1021 cagaggagag actgggatgg agaatcagca gagacaccaa tctggccctt gatcaaatat
     1081 gtggaagtga ttcttcccaa atcttcactg atcccagaag gggttgtctt ggtagacatt
     1141 ccaggcacag gtgatttcaa cagcaagagg gatgagatgt ggaaaaagac cattgataag
     1201 tgttccatga tctgggtgat cagcgacata gagcgagttt ctggaggaaa ggcccatgaa
     1261 gacctgctga gcgagagcat caaagcctgt cagcgtggct tctgcaggga catcgccctg
     1321 gtggtcacca aaactgacaa actccacttg caggaatatc tcagggaaag aaagatggga
     1381 aatcaagcta ttcaaagtca gagagaggct gttctgcaaa gaaatgaaat aatcaaacta
     1441 caaaggaata aaattctcaa ggagaaattg aagaggaaac tgccagctga ctctaaggtt
     1501 ctggaagcct cggatctggt gtacacagtc agtgcccatg agtactggca gcaggccctc
     1561 cttactgagg aagaaagtga gatccccaag ttaagagaat atattaggaa aaggctcttg
     1621 gacaagaaga ggaggctggt gaccaagtac gtcactgaag cctttggcct attgcttctc
     1681 acagacactt tcaactctga ggaaaacctg ctgactgaac agctgaacat gggtggcctg
     1741 cggcaatttg tggaggagaa gatggagctg ttggagaagg ccattgagca gtgctttgct
     1801 cgaatagaac agcccctgcg gacgggggtc caggtggcca gggcatccta ccgccgcatc
     1861 ctcggggcat gcctggtgag gagcagagga aaccaaggtt ttcaccagac cctgaaagct
     1921 gtttgcctga aaaatggcgt ctatgcctcc aggactctgg ccagaatcga cctgaatgaa
     1981 gccctgtctc agcccatcta tgaccagatc gaccctgtat tcggaggcat ttttagggat
     2041 gggaagccca ctgcccctgc tctgatgcag cacatagatg ctttcaagca gtccctggag
     2101 aagagaatgg cagagattgg ggttagaagt ggctggaaac atgatggcta caagagaagc
     2161 ttcctgatcc aggagataag tgccatcctg ggaagcctgg agagccacat cctccgaagg
     2221 aagaggaaga tctatgagtc tgtcaccagc tccatccaaa atgacctgaa gccctgctat
     2281 gaagaggcag ctcagatcac tggcaagaaa gcatgtgaga gaatgaagga cgccattagg
     2341 agaggggtgg agcggcaggt ggccgaaggc ttgtttgaga gggcccaaga gaggatgtgg
     2401 caccagtttc gacaactgaa gcctggaatc actgagaagg tcaaaggcag catcactacc
     2461 atgttaaccc ttgctgcacc ccagggagat ggactctaca aggagctggc tgatgtccgg
     2521 aatgaacaga aagagatgga aaagctccac agaagcctga gggaggtcgc tgaaaacgca
     2581 caactgcgga ggggcatgca agatttcctc ctgcgaatgt cccccagcaa agcaggcccc
     2641 catggaacaa agctttagtt tagggaggag gggcttagat gtaaagagat aaaaacaggc
     2701 ctgaggccaa agaaccagaa ttattgctaa ttttttttga aacagaataa aaaccattcc
     2761 tcattatttg gaatttctat ataacacaaa actgctacat cattatttct ggtatcatag
     2821 ccaaaagcaa aaaataaaca aaaaccaaca aaaaa
//
