LOCUS       XM_003750867           10896 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus nuclear FMR1 interacting protein 2
            (Nufip2), transcript variant X1, mRNA.
ACCESSION   XM_003750867
VERSION     XM_003750867.5
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_003750867.6.
            
            On Jan 21, 2021 this sequence version replaced XM_003750867.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10896
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..10896
                     /gene="Nufip2"
                     /note="nuclear FMR1 interacting protein 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 98 ESTs, 18 long SRA reads, 4 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 53 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:681371"
                     /db_xref="RGD:1596719"
     CDS             318..2393
                     /gene="Nufip2"
                     /codon_start=1
                     /product="FMR1-interacting protein NUFIP2 isoform X1"
                     /protein_id="XP_003750915.2"
                     /db_xref="GeneID:681371"
                     /db_xref="RGD:1596719"
                     /translation="MEEKPGQPQPQHHHSHHHPHHHPQQQQQQSHHHHHYYFYNHSHN
                     HHHHHHHQQPHQYLQHGAEGSPKAQPKPLKHEQKHTLQQHQETPKKKTGYGEINGNAG
                     EREISLKNLSSDEATNPISRVLNGNQQVVDTSLKQTVKTSTFGKAGIKTKNFIQKNSM
                     DKKNGKSYENKSGETQAVDKTDTIAIPNGVITNNSGYITNGYMSKGADNDGSGSESGY
                     TTPKKRKARRNSAKGCENLNLVQDKIMQETSVPALKQGLETLKPDYSEQKGTRVDGSK
                     PIWKYETGPGGTSRGKPAMGDIIRKSSDIKPGLSSKKFDDRPKGKHASAAASKEDSWT
                     LFKPPPVFPVDNSSAKIVPKISYASKVKENLNKTVQNSSVSPTSSSSSSSTGETQTQS
                     SSRLSQVPMSALKSVTSASFSNGPVLAGTDGSMYPSAGQPLLTTAANTLTPISTGTDS
                     VLQDMSLSSAAVEQIKSSLFIYPSNMQTVLLSAQVDLPSQTDQQNLGDIFQNQWGLSF
                     INEPSAGPETVIGKSSDHKVMEVTFQGEYPATLVSQGAEIIPSGTEHPVFPKAYELEK
                     RTSPQVLGNILKPGTTESGALSLEPSHIGDLQKADTSSQGALVFLSKDYEIENQNPLA
                     SPTNTLLGSAKEQRYQRGLERNDSWGSFDLRAAIVYHTKEMESIWNLQKQDPKRIITY
                     NEAMDSPDQ"
ORIGIN      
        1 tgcaaaacca acagatggct cctagcgcca gtagaatcct cagtggaatc tgctacactc
       61 gacatcagct tgctcgctgt gaggagtgta gaaagtgctg ttcgctaact gcgtggtgaa
      121 ggagagaaag cgatagaaga gagagccata atgctgacgt tgaaggcccg gccctgtgag
      181 gttgcatagg atccgctcgc ttaaccagtg cgctggcgag acgcgctcag atatactgag
      241 cgagcgcgga gaagcagtct cagatcctga cggtgcagca gcccgcagcc tcagccaggg
      301 agtcccagcc gctttcaatg gaggagaagc ccggccagcc acagcctcag caccatcaca
      361 gccaccacca tccgcaccat cacccccagc agcagcaaca gcagtcgcac caccaccacc
      421 attattattt ctacaaccac agccacaacc accaccacca ccaccatcac cagcagcctc
      481 accaatacct gcagcatgga gccgagggca gccccaaggc ccagcccaag ccgctgaaac
      541 atgagcagaa acacaccctc cagcagcacc aggaaacgcc gaagaagaaa acaggctatg
      601 gtgaaataaa tggtaatgct ggagaaagag aaatatcttt aaagaacctc agttctgatg
      661 aagctaccaa ccctatttcc agggtcctca atggcaacca gcaagttgta gacacgagcc
      721 tgaagcagac tgtaaagacc agcacctttg gaaaagcagg aattaaaacc aagaatttta
      781 ttcagaaaaa cagtatggac aaaaagaatg ggaagtctta tgaaaataaa tctggagaga
      841 cccaggctgt agataagacc gacactatag caattccaaa tggtgttata acaaataatt
      901 caggctatat tactaatggt tatatgagca aaggagcaga taatgatggg agtggatctg
      961 agagtggata taccactcct aagaaaagga aagctaggcg caatagtgcc aagggttgtg
     1021 aaaaccttaa tttagtgcaa gacaaaataa tgcaagagac tagtgtccca gcattaaaac
     1081 agggacttga aactttaaag cctgactaca gtgaacaaaa gggaactcga gtagatggtt
     1141 cgaagcctat ttggaaatac gaaactggac ctggaggaac aagtcgtgga aaacctgcta
     1201 tgggtgacat aattcgtaaa agttcagata ttaaacctgg tctgagtagc aaaaagtttg
     1261 atgatcggcc caaaggaaag catgcctcag ctgctgcctc caaagaggac tcgtggacct
     1321 tgtttaaacc acccccagtt tttccagtgg acaatagcag tgcaaaaata gttcctaaaa
     1381 taagttatgc aagcaaagtt aaggaaaacc tcaacaaaac tgtacagaac tcctctgtgt
     1441 caccaacttc atcttcatca tcatcatcta ctggggaaac tcagacccaa tcctcaagtc
     1501 ggttatccca ggtccccatg tcagctctga aatctgttac ttctgccagt ttttctaatg
     1561 ggcctgtttt agcaggaact gatggaagta tgtatccatc tgcgggtcag ccactgctaa
     1621 ctactgctgc taatacttta acacccatct ctactgggac tgattcagtt cttcaggaca
     1681 tgagtctgag ttcagcagct gttgaacaaa ttaagtctag cctttttatc tacccttcaa
     1741 atatgcaaac agtgctgtta agtgcacaag tagatctgcc ctctcagaca gatcagcaaa
     1801 acctgggaga tatattccag aatcagtggg gtttatcgtt tataaatgaa cccagtgctg
     1861 gcccagagac tgttattgga aagtcatcag atcataaagt gatggaagtg acatttcaag
     1921 gagaatatcc tgccactttg gtttcacagg gtgctgaaat aattccctca ggaactgagc
     1981 atcctgtgtt tcccaaggct tatgagctgg aaaaacggac tagtcctcaa gttctgggta
     2041 acattctaaa acctgggact actgagagtg gagccttatc cttggaaccc agtcatatag
     2101 gtgacctgca aaaagcagac accagtagtc aaggtgcttt agtgtttctc tcaaaggact
     2161 acgaaataga aaatcaaaat cctctggcct ctcctacgaa cactttgtta ggctccgcca
     2221 aagaacagag ataccagaga ggcctagaaa ggaatgatag ctggggttct tttgacctga
     2281 gggctgctat tgtatatcac actaaagaaa tggaatctat atggaatttg cagaagcaag
     2341 atcccaaaag gataatcact tacaatgaag ccatggatag tccagatcaa tgaaggacca
     2401 gactgcctat ttgtaacctt tgtgcagcat tagagccacc gttcatgtgg gacacaaggc
     2461 tttcatgctc ctagatcttc aacgcagcag aggaaccata agtagaatca caggataata
     2521 tatacaaata tatatatata catatatata tatatatagt tatttaaaaa aaaggcaact
     2581 gagagtaatt agacttctta aggaatcaaa tttatttcaa gagactacac atggttattt
     2641 aatctccggt accgaatagt ctttttcttt attattttgt tagtttttgt ttttaagtgt
     2701 gaatgcaagt gattaatgaa tacagactta acaagcgtgg ttctaaagtt cctgctgtca
     2761 tctacttggg caacaaatga cccactggaa aggcaaatcc acttacttct aggtatctgt
     2821 accttgttct gtgactaaag tgatacacta atcacgggga acccagaatg attcaacatt
     2881 ttcccctact ccgcccttga tcttttagtt ttattttgag ccctgcgaga atgctggata
     2941 aatgccttga agtttgcagg ggtgtttttt gttgtttgtt ttttgttttg tttttttttt
     3001 taatccaatg atttgcatgt cttgccaaga gttgtgcagc ctctggggtg ttggggaaat
     3061 agttcctttc cttttatttt ttgtggggtg gggacagggg gagggcattg aagttttaca
     3121 atcctggaat agtttgtggg tacatagtta acttactttg gttacatgtt tgacttttaa
     3181 cagctgaaga atctaagagt gtcattcaag gaaaagttgc agaacgagta attggctgat
     3241 aattacccat tgtaattgtg taactgggag caaaaatcca ttctgctttt ctgctgtagg
     3301 tgctcagact tgctctctgt cactaacact aagtgcgtac tcttcttgtt tttcatcaac
     3361 catttaagag aaacttatgt acctttctgt aaattctttt aatttcagtt tctcagcaaa
     3421 atctaaaaag gaaaaaaaaa ttcatgaaaa ccgtcttttt ttagccagtg aggaggtaat
     3481 aaacactgct tatatatgta gaaggtgtgt tttcaggcaa attctacttc tcagcttaca
     3541 tatttctaat tatatcttaa tatattttat cattagagca agattgggct tggggttttt
     3601 tttgtttgtt tgtttgtttg tttgtttggg ttttgttttt gttttttaat aatgtgaaat
     3661 tctgaaaatt ttgggcagaa agaggcatta gccctgtctt atcatcgcat tatcatcctg
     3721 ttgtgctgcg gcttgtgtat agcatgctaa aacgtgtgtg tgtgtgtgtg tgtgtgtgtg
     3781 cttgtgtata gcatgctaaa acgtgtgtgt gtgtgtgtgt gtgtgtgtgt gagagagaga
     3841 gagagagaga gagagagaga gagagagaga gagagagaac gaacgaacga actaagggtc
     3901 caatttaaga ctgggtgagt tagtggcata attacaagtt ctggcctgat gtagcatcat
     3961 atcacacaca acagagaaat taatgtatcc atgtatgtca aatgcaagtt aaactagcag
     4021 ggcatttaca gagttgcagt ctaacaaagg caaactggat cccttggaca ctttgagggg
     4081 gttgggggtg gggacaaagt agttactttt tattcttgtt ttataagaaa tgtccagttt
     4141 tgagtgattg tagtatggat ggattttctg gttttgttaa ttatttcagg tttttaacaa
     4201 atgttcatga aagaacctat ttgatttact gcagagaaaa atacttttta gtctggattt
     4261 ctgccctact tagatttttt ttttaaagta taagcatgga ttgccaattc cacttgatgt
     4321 aaacaaaact ttttatacat aatatataat aacttattgt atcagtccag gttcagaaac
     4381 ttgtggtagg ccagtttcag atagtttcat ttcacctgta aactgtatca cttttactga
     4441 tattgtaatt ttcaaatgta taatatgttt acagatgtgc cctgcattta gtagctttgt
     4501 tcctattttt cttttttttt tttttttttt ttttttcctt tttggttgag tctcctgcct
     4561 gccaaaagct aggatgcttc aggcccctgt acatcagtga ggcatccttg agctttaaag
     4621 cactgagcaa actggaaaat gcaacacgcc acatactgaa ctgaaaagtc tgtgttttgt
     4681 gttccttttt tttttttaat ttttaataaa aattttcaaa aagttaaaaa aattttgatt
     4741 aaagaaaaac gaggctccag tttgttttat aggttttaaa gttctgccgt gtgtttaatt
     4801 gccttgtgtg accacttgtc gccttagggc tgaatcctta ccccactttt tttaagtgtc
     4861 cgttttgctt gcctggaatt ttaaagttgg tctgttgcac aaatcacaaa aacaaaagaa
     4921 caaaaaaata cttcctaggt ttatggcata caaggttgaa tgaacatact taaaatgaaa
     4981 aaaaaaatcc agtttcctga attgggattt taacttagaa gtaatactta gtacctttaa
     5041 aggccttcac tttcataatt cttttccata actttcaggc tgcggtgcag agaagctaaa
     5101 gagaatgtac cctttctctg tccaagggtt gagaatctca cttcctctaa atgagacaat
     5161 gcaacatttc actttgattt ctccactgaa attttcttga taatgtggtt agaggtgtgt
     5221 gtatacacac acacacacac acacacacac acacacacac acacacacac acacagtagt
     5281 tagaaatgtc tcttaaactt tctgggatcc ctaatggtcc atcatattaa ctgtcagtat
     5341 tttttggaca ttgggttaat ggacttagtt gcctcagtac aagcaggact ttgggacaga
     5401 tatcttttgt gctgtttgat acttgtctca atctttctcc ttaggtcctc acacaattcc
     5461 ttacagagca cttattaaaa aaatgtctta cgagttcatc tgttttctga ttattttttt
     5521 gtgtgtaagc ttctaaagaa acatcagctg tgattaattt agcacattta aataacagta
     5581 tgttgtcggt ataaagaatt ttccttcaac tcagagtatt agtactgtag cataaaccaa
     5641 atacagtcta gaggggattt ttaacatccc tccatttaaa agactgaaaa agatacgtgt
     5701 gtgtggatgt atgtatgttg gggtgcttgt atgttgggga aagatgaaga tactaagaat
     5761 tagtaaatga atgtgtaaga catattagta ttcagagaat gaaacttgta tttattttgt
     5821 gccatttgtt ttcattacac ggaataaagt cgggtggttt aaatccttca agggtagtac
     5881 tagaaaaatg gcactaagga tgaaatcatg gcctattttt ttaatagcta agaaactaat
     5941 tatgggtgat gatttccttt tcagtttgtc ttgtagtttt tacgtcacca ctcaattttg
     6001 tgtaaaagtc ttgaataatc ttccttcccc acaaaagaca gggtgtattt atcttttctc
     6061 tattcgtcct catttcaaca gcctgaagtt aattgcatag tgtttctgct aaccttagta
     6121 atgaaccttc acatcaataa agtttttatg gtgtctatct agcctgccct ctgcttccta
     6181 ggaggggata gccaatatct taaaaatttt gtagtgatac cttttttccc ctgtcctcaa
     6241 tctgctttcc tagttaccac tctgaatctg caaaagaaaa ataaaaacca gtgctgtaat
     6301 tttttttcaa gtgacagttt ttagagaaaa taaggtaaat cttgaactga taggcagttg
     6361 tttcttcaca aaataggaca catcaacagt agttgcacac ttggctgtta gacttgttgc
     6421 cagccttcac caaaagcatt ctttttttgg gggggggggt taaggttaag gacatgtgat
     6481 atgaacttgc accagatggg cacatgcaag gaaattgaag acctggcgca gtttaaaaac
     6541 ctgtctgtat gtggtgatgg tgatgatgag gtttctctca agttacttag tgtgctaatt
     6601 gctaaggatt ttatgccact tgaccatatt ttcaaatgat acaattcctt ttatatatta
     6661 accagtcaaa ctagtatagt gtagtggacc agatatgtga agaattattt ctgtaagacc
     6721 tgttgatgta tgcctgccag agtggttttt gataggactg tattagaaaa ggatgggatt
     6781 tacttcccca gtctcctaga agaaagcaca ggacgagtaa aagcataagt agctgcttaa
     6841 agatggccag aagaacataa ggcctgaacg ccattactga tttcccttca aaagtattga
     6901 tatatttctg tgttgaggaa ggtgggcttc tgctgtgggt atcttaaaat gcttatgaac
     6961 acctagatat agatatgtga gttgcaagac cattctgtag gtataaaaaa agataaatta
     7021 tcaactccac tcaaggactg atctactcac caagttttaa gagagatctt gaggcaatta
     7081 ttagatgcca gcagtagtga gttttaccca gcagtagtga gtttttcgtt ctccgtaaga
     7141 tgcccagcaa agcagcagta gtgtattata ctattgtatt atgaggactc agatatggac
     7201 tgaaactcaa aagacaccct aagctgtagt agggttgctg gttcaaacat ttcctattta
     7261 gaaaattttg ttctgtccag agttctgaag ccatttttta acatgtaggt gtctgtttga
     7321 atttttgttt tgttggggag ggggaagata accggtttca cagtgtagtc ttgggtagcc
     7381 tgaagcttgc tctatatact aggctggcct caaactcaga tctgcctgcc tctgcctcca
     7441 gagtgctggg gttaccacca aacctggcaa tgtattttaa cagccttatt tgaaatagtt
     7501 acaaatgttt cccctagttg aattttgctt tcattgtagt cattttaatc tacagaccaa
     7561 acaacttaga tcaacattac aatagctttc tatttagacc cctttcctca ggtgctaaac
     7621 aaaggctcca aaatgaatac tgctttagta acatctctta ttcctaaaat gcatatttct
     7681 tttactaatt gtaaagattt ggtgttaaca aaatggtttt aatatgtaaa tatgaacgaa
     7741 taccttaagt tcttcttgtc tattaagtct gtttgcattt atcttttgta gataattttt
     7801 cacaatcttt aatacatttc attaggtatt gcatctttag aatgaaaaca actgttttgt
     7861 cttagattac gcctgctgct gctgctgctg ctgctgctgc tgctgctgct gctgctgctg
     7921 ctgctgctgc tgctgctatg ggaaactgaa aatcaagaat gtgatgcact ttttaacatt
     7981 actatatacc ataggttgct ttaatacctt tttttggtag cacagccact aacaaaagtg
     8041 aacagagttt attattctct tcaggagtga gtcagtaaag tagtctgtag tttgtgttga
     8101 cttatgaagg ggacagtaac ttaggaaata aatttttggt taatattata ttttggcctt
     8161 aaagtgtctt ctactactga aaatagttat agctttgttt ctattattcc ctctgcttca
     8221 aaaagacttg ggaagaatta gaggaaatca tttcatttgt ttttagttct cagtaagctg
     8281 cgttttgttt tttgtttgtt acaattttat cagagaagta atgttgccct gcacctatca
     8341 tatttagttt agttaacaag ctcccaacta ttctacttct ctagtatatg ttcaaaggta
     8401 aaatataaga atgctacttg acaaagtaaa atatcttcgc aagcacatac tcaaacatga
     8461 aggagaaaaa acccaaaagt atagaggaag gacaccaaat gaggtggagg aatatgagaa
     8521 tgatgtgtgg tccaaagcta tctggttata ttttgatgtt gccaatatta cagagccaaa
     8581 attttaattt gcttacttaa tatatttgtt ggccagagat ctatttttat atcagtgtgc
     8641 cttgcatgta tattaacttt ggaaaggcca tgtattaatg cctgaaatgt tgatggttct
     8701 taccacctca ctgattttta tgcagttgaa atgttcattc tattgcccaa ctggtgctct
     8761 ctgtttaaag ttatagatct tgtcaaactg gaactctttt ataaactggg gaagtgactt
     8821 gctttttcac ttattttttt tccctccgtt tttagtcagt tagtggctgc tctgtagtgg
     8881 gaaatagtaa aaaaggttct tcactaccta cccccaccct caacaccacc ttcaagtaat
     8941 gtgatagtat cgtttctttg tgtgctttga aaaaatttca gcttgctgtc tcctttagtg
     9001 ttataaaagg tattattaaa agcattgttt gcaaaaaata caggaaatga tggctgtcca
     9061 cgttaatttg ggattctttg tgagctttat tccaagttac tggctcattc caacagattt
     9121 tattgttgaa gcaccttgct tagggatttt aaatattcat gtctacaaca cttgtctcaa
     9181 aataataaac tgtgcaattc ttgtcattaa aaaaaaaaaa aacaaagaca gatctgaact
     9241 ctccctaatg tgacttgtta gtttctgtat ttcctgccag tgtaaatgtg aaaagctttg
     9301 cttgcattac gttttagaaa tgcattttgc acactcagtt tgccgaagct ccgtgaaagg
     9361 ttagatttaa gtagatgaat aaagctatgc acatgttctg aaagtttaat ctgtgtgtca
     9421 ttaccaaaag taatctgtca ttattttgct gttcgtagct ttaccatctt tggaaacatg
     9481 gttcaaagtt ataattctgg gctagctcat cagtggaact aaagggagga aaactggcaa
     9541 ccactgaata aagttcagct gaagtgagag cttaacctgt ctgtatctgt taaagggctt
     9601 ttcttcaaac agggcagttg tatcagcttt ataaaccatt ggatccaatg cgcttctcag
     9661 tgaaattttg aatatttatg aaaaagaaat ggaaagtcat tcaaactaaa atgaaggaaa
     9721 gacctttgcc atatgaagct cggacaattt tatgtcttaa agctggttta aaggtagggt
     9781 agcattttat taacctttat tgctttaaca tgaatttgat taactggata gtttgaaatt
     9841 aaagtcattc agtttaaaag tcaaaacaca attgttttaa agatatttta aaaagcccaa
     9901 gctgatgtga gtgagttgag aagttgggca tgtttggtta attcactgca gttgcatgta
     9961 ctgagtagtt tcacttacat gaggtgtgca cttacaaggt tgtgtagatc tgctggccag
    10021 atgttgtcat tcatcttata acaggaactt tggtgatttc cttaggacat tcatagatga
    10081 gttaagtaga agacattacc aatggtgttt tccccaggct cccagatata agatatattt
    10141 cattttatag ctttggctat ctaaaagagg gttacttcac tttcatcttg ttgactttga
    10201 aaagacagca aattctgttt gttcatagtg atgattataa caaaacctag tagagtttca
    10261 aaatgtggtc agtgatgcat aatcttaaaa acaaaggcag tagcaaacag cttggatgga
    10321 ttttgaatat ctgttagtag ttgattacat ctgtaatcct ggcaaccaga aggctcaagc
    10381 aagaggattg tgagttcaaa gccagattgg cctgcatggc aacaacatag taaatgtatt
    10441 ggagaactaa agtaatctat tgtgtgcaga catttattca tgaactgggt tgccttttaa
    10501 ttttggaaaa ggataattag tacattacag ttctgttaga agatgttggc cctttcctgc
    10561 tgaaattttt ttcaatacct gttttgccca gtttaaaaaa taataaaagt aggtcttttc
    10621 tagatagaag aacagtgacc agaaatttac tgttttgcta aataactaac tgcttaggta
    10681 tttactaaag ccgttgctga tgttatgaat tccaaggaag tgtcagttac atgatcttcc
    10741 tttattaatg tcttacttaa tgttcagtgt tttaaaaata caaaattaca ctctacaacc
    10801 atactcagat ttacttattt tatcagaaaa acttgagatt tgtagatcaa ataagacaat
    10861 aagtgtacat tgttgaataa aaaaaattta aaagtt
//
