LOCUS       NM_001100782            1288 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus nudix hydrolase 16 like 1 (Nudt16l1), mRNA.
ACCESSION   NM_001100782 XM_001076872 XM_573047
VERSION     NM_001100782.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1288)
  AUTHORS   Drane P, Brault ME, Cui G, Meghani K, Chaubey S, Detappe A,
            Parnandi N, He Y, Zheng XF, Botuyan MV, Kalousi A, Yewdell WT,
            Munch C, Harper JW, Chaudhuri J, Soutoglou E, Mer G and Chowdhury
            D.
  TITLE     TIRR regulates 53BP1 by masking its histone methyl-lysine binding
            function
  JOURNAL   Nature 543 (7644), 211-216 (2017)
   PUBMED   28241136
REFERENCE   2  (bases 1 to 1288)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 1288)
  AUTHORS   Song MG, Li Y and Kiledjian M.
  TITLE     Multiple mRNA decapping enzymes in mammalian cells
  JOURNAL   Mol Cell 40 (3), 423-432 (2010)
   PUBMED   21070968
REFERENCE   4  (bases 1 to 1288)
  AUTHORS   Taylor MJ and Peculis BA.
  TITLE     Evolutionary conservation supports ancient origin for Nudt16, a
            nuclear-localized, RNA-binding, RNA-decapping enzyme
  JOURNAL   Nucleic Acids Res 36 (18), 6021-6034 (2008)
   PUBMED   18820299
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC158814.1.
            
            On or before Sep 6, 2008 this sequence version replaced
            XM_573047.2, XM_001076872.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158814.1, FQ221237.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMEA5760396
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1288
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..1288
                     /gene="Nudt16l1"
                     /note="nudix hydrolase 16 like 1"
                     /db_xref="GeneID:497867"
                     /db_xref="RGD:1561451"
     exon            1..166
                     /gene="Nudt16l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             14..649
                     /gene="Nudt16l1"
                     /note="protein syndesmos; nudix (nucleoside diphosphate
                     linked moiety X)-type motif 16-like 1"
                     /codon_start=1
                     /product="tudor-interacting repair regulator protein"
                     /protein_id="NP_001094252.1"
                     /db_xref="GeneID:497867"
                     /db_xref="RGD:1561451"
                     /translation="MSTTTVPELKQISREEAMRLGPGWSHSCHAMLYAANPGQLFGRI
                     PMRFSVLMQMRFDGLLGFPGGFVDRRFWSLEDGLNRVLGLGLGGLRLTEADYLSSHLT
                     EGPHRVVAHLYARQLTLEQLHAVEISAVHSRDHGLEVLGLVRVPLYTQKDRVGGFPNF
                     LSNAFVSTAKYQLLFALKVLNMMPSEKLAEALASATEKQKKALEKLLPASS"
     exon            167..427
                     /gene="Nudt16l1"
                     /inference="alignment:Splign:2.1.0"
     exon            428..1264
                     /gene="Nudt16l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggagcacatc aagatgtcga ccacgacggt tccggagctg aagcagatca gtcgggagga
       61 agcaatgcgc ttggggcccg gctggagcca ttcatgccac gccatgctgt acgctgccaa
      121 ccccgggcaa cttttcggcc gtatccccat gcgtttctca gtactgatgc agatgcgctt
      181 cgatgggctg ctgggctttc ccgggggttt cgtggaccgc cgcttctggt cactggagga
      241 tggcttgaac cgggtcctgg gtctgggcct gggcggccta cgccttactg aagctgacta
      301 cctgagttca cacctgactg agggtccaca ccgtgtggtg gcacacctgt acgcacggca
      361 gctgacgctg gaacagctgc atgctgtgga gatcagcgct gtgcactcgc gggaccacgg
      421 tttggaggtc ctgggccttg tacgtgtccc actgtacaca cagaaggatc gagtaggagg
      481 cttccctaac tttctgagca acgccttcgt cagcactgcc aaatatcagc tcctatttgc
      541 ccttaaggta ctcaacatga tgccctcgga aaagctggcc gaggccttgg cctcagccac
      601 ggagaagcag aagaaggccc tagagaagct gctcccggcc tcatcctgag gtggttcctg
      661 tgcaggtccc tgccctccct tggctgtctc tgcccacagg ccctggaatt cccgagaagc
      721 gtgccttcta gtgtgtttgg ttttgcatcc cttctactgc aagggacaag caggcagctg
      781 ttcatcattg ttgtcccaag cagtccctgg gacccagcca ccctctctca ggttggtcag
      841 tgggctgggc ctgggcccgg gcccagcttt tcaagctgaa gatgttcttc tcacccatcc
      901 cagggctcaa actgtgccgt gagtctgttc atgactggtg gagccccagc tagagccatt
      961 cttcccaggc aaccactcgg atggtaccca gatcctggac tggttgtggg ttttgttcag
     1021 tagagaggac ccatattaga tcagcccttc cttcccttag cccagaaccc ggtccagctt
     1081 ggggtaggat gatgcttggg tggttgttgg atttctgttg ggtttttttc cttggtgtat
     1141 gaactgtggg ttggtttcag aatggctgtg ccccatatgg ctttgttttc cccatgaggg
     1201 ctttgacttg gctctgtgaa actgaggaag aaagaagaca ataaagccat tcctctgatg
     1261 ctcaaaaaaa aaaaaaaaaa aaaaaaaa
//
