LOCUS       NM_001106465            5085 bp    mRNA    linear   ROD 22-MAR-2023
DEFINITION  Rattus norvegicus netrin G1 (Ntng1), mRNA.
ACCESSION   NM_001106465 XM_001071922 XM_227605
VERSION     NM_001106465.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5085)
  AUTHORS   Matsukawa H, Akiyoshi-Nishimura S, Zhang Q, Lujan R, Yamaguchi K,
            Goto H, Yaguchi K, Hashikawa T, Sano C, Shigemoto R, Nakashiba T
            and Itohara S.
  TITLE     Netrin-G/NGL complexes encode functional synaptic diversification
  JOURNAL   J Neurosci 34 (47), 15779-15792 (2014)
   PUBMED   25411505
REFERENCE   2  (bases 1 to 5085)
  AUTHORS   Song YS, Lee HJ, Prosselkov P, Itohara S and Kim E.
  TITLE     Trans-induced cis interaction in the tripartite NGL-1, netrin-G1
            and LAR adhesion complex promotes development of excitatory
            synapses
  JOURNAL   J Cell Sci 126 (Pt 21), 4926-4938 (2013)
   PUBMED   23986473
REFERENCE   3  (bases 1 to 5085)
  AUTHORS   Nakashiba T, Nishimura S, Ikeda T and Itohara S.
  TITLE     Complementary expression and neurite outgrowth activity of netrin-G
            subfamily members
  JOURNAL   Mech Dev 111 (1-2), 47-60 (2002)
   PUBMED   11804778
REFERENCE   4  (bases 1 to 5085)
  AUTHORS   Nakashiba T, Ikeda T, Nishimura S, Tashiro K, Honjo T, Culotti JG
            and Itohara S.
  TITLE     Netrin-G1: a novel glycosyl phosphatidylinositol-linked mammalian
            netrin that is functionally divergent from classical netrins
  JOURNAL   J Neurosci 20 (17), 6540-6550 (2000)
   PUBMED   10964959
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473952.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001071922.1, XM_227605.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760433,
                              SAMN12840115 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..5085
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q41"
     gene            1..5085
                     /gene="Ntng1"
                     /gene_synonym="RGD1563465"
                     /note="netrin G1"
                     /db_xref="GeneID:295382"
                     /db_xref="RGD:1563465"
     exon            1..322
                     /gene="Ntng1"
                     /gene_synonym="RGD1563465"
                     /inference="alignment:Splign:2.1.0"
     exon            323..1065
                     /gene="Ntng1"
                     /gene_synonym="RGD1563465"
                     /inference="alignment:Splign:2.1.0"
     CDS             820..2439
                     /gene="Ntng1"
                     /gene_synonym="RGD1563465"
                     /codon_start=1
                     /product="netrin-G1 precursor"
                     /protein_id="NP_001099935.1"
                     /db_xref="GeneID:295382"
                     /db_xref="RGD:1563465"
                     /translation="MYLSRFLSIHALWVTVSSVMQPYPLVWGHYDVCKTQIYTEEGKV
                     WDYMACQPESTDMTKYLKVKLDPPDITCGDPPESFCAMGNPYMCNNECDASTPELAHP
                     PELMFDFEGRHPSTFWQSATWKEYPKPLQVNITLSWSKTIELTDNIVITFESGRPDQM
                     ILEKSLDYGRTWQPYQYYATDCLHAFHMDPKSVKDLSQHTVLEIICTEEYSTGYSTNS
                     KIIHFEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFV
                     DELHLARYFYAISDIKVRGRCKCNLHATMCVYDNSKLTCECEHNTTGPDCGKCKKNYQ
                     GRPWSPGSYLPIPKGTANTCIPSISSIGNCECFGHSNRCSYIDLLNTVICVSCKHNTR
                     GQHCELCRLGYFRNASAQLDDENVCIECYCNPLGSIHDRCNGSGFCECKTGTTGPKCD
                     ECLPGNSWYYGCQPNVCDNELLHCQNGGTCHNNVRCVCPDAYTGILCEKLRCEEAGSC
                     GSDSGQGAPPRGSPALLLLTVLLGTASPLVF"
     exon            1066..1706
                     /gene="Ntng1"
                     /gene_synonym="RGD1563465"
                     /inference="alignment:Splign:2.1.0"
     exon            1707..1879
                     /gene="Ntng1"
                     /gene_synonym="RGD1563465"
                     /inference="alignment:Splign:2.1.0"
     exon            1880..1906
                     /gene="Ntng1"
                     /gene_synonym="RGD1563465"
                     /inference="alignment:Splign:2.1.0"
     exon            1907..2074
                     /gene="Ntng1"
                     /gene_synonym="RGD1563465"
                     /inference="alignment:Splign:2.1.0"
     exon            2075..2209
                     /gene="Ntng1"
                     /gene_synonym="RGD1563465"
                     /inference="alignment:Splign:2.1.0"
     exon            2210..5085
                     /gene="Ntng1"
                     /gene_synonym="RGD1563465"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaaaaaaaca cacagtaaaa gtttaaggcg agaagtggtg gcggcggcgg cgcggggagg
       61 ctgcgagcag agaaggctgc cgagacctcg gaaggcggcg atttggtttc taatcccact
      121 gtatttttgg agggagaggc acctttctca tcctcccttc ctctccgccc acccctctcc
      181 ctccccctca tctacctgtc aaagtcactg atcttttgca ttttggaaga ggacgtcaac
      241 gggaaggaat tccccccgtc agggtcccgg ttccgagagg gggcgacgcg cgacaaggct
      301 gccccagagg caagaaacca aggttgctgg tgccagaagg ggaaaagaaa agattgatgg
      361 gagacagaca caggaccata gacacgcatc cctttgcttt tggtacgtca gtgcatctga
      421 gcagccctgg tgaaccctga acactgagga tcactcagga ttatcggatg tacaacaggc
      481 gagccatcgc tttgctgaat tattacctgc tcctggacat ctttcacaaa agtctaatag
      541 atatgttcta cgaggagaag aggctgcaag ctgttaacgc ctaacagata agcatgttag
      601 gtttcgacca aagtcctcgg catacctgac cacgcacaat attcccaatc tgtcacgttt
      661 ggttttggaa tctgctttga gacctcagcc tatttttttt ttaatataca gacctaccta
      721 cataaagaca cgtatagagg cacatatatc atatactcat gtatatttaa aagagacact
      781 gattgcatat aagacacgaa gactgccaag attttagaga tgtatttgtc aagattcctg
      841 tcgattcatg ccctgtgggt tacagtgtcc tctgtgatgc agccttaccc tttagtgtgg
      901 ggacattatg atgtgtgtaa aactcagatt tacacggaag aagggaaagt ttgggattac
      961 atggcctgcc agccagaatc cacggacatg acaaaatatc tgaaagtgaa actggatcct
     1021 ccggatatta cctgtggaga cccgccagag tcattctgtg caatgggcaa cccttacatg
     1081 tgcaataatg agtgtgatgc gagtaccccc gaactggcac accctcctga gctgatgttt
     1141 gattttgaag gaagacatcc ctccacattt tggcagtctg ctacttggaa ggaatacccc
     1201 aaacctctcc aggttaacat cactctgtct tggagcaaaa ccattgaact cacagacaac
     1261 atagttatta cctttgaatc ggggcgtcca gatcaaatga tcctagagaa atctctggat
     1321 tacggacgaa catggcagcc ctatcagtat tacgccacgg actgcctaca tgcattccac
     1381 atggacccga aatccgtgaa ggatttatcc cagcacacgg tcttagaaat catttgcaca
     1441 gaagagtact ccactgggta ctccacaaat agcaaaataa tccacttcga gatcaaagac
     1501 aggtttgcat tttttgctgg acctcggcta cgaaatatgg cttccctcta tggacagctg
     1561 gatacaacca agaaactcag agatttcttc acagtcacgg acctgaggat caggctgttg
     1621 agacccgccg ttggggaaat atttgtagat gaactacatt tggcacgtta cttttatgcg
     1681 atctcagaca taaaggtgcg aggaaggtgc aagtgcaacc tgcatgccac catgtgtgtg
     1741 tatgacaaca gcaaactgac atgtgagtgc gagcacaaca ctacaggtcc agactgtggg
     1801 aagtgcaaga agaattacca gggccgaccg tggagtccag gctcatacct ccccatcccc
     1861 aaaggcaccg ctaacacctg tatccccagc atttccagta ttggtaactg tgaatgcttc
     1921 ggccactcca atcggtgcag ttatatcgat ctgctaaaca cagtcatttg cgtgagctgt
     1981 aaacacaaca ctagagggca gcactgtgag ttatgcaggc tgggctactt cagaaatgct
     2041 tctgcacagc tggacgatga gaatgtgtgc atagagtgtt attgtaaccc tttgggctca
     2101 atccatgatc gttgtaatgg ctcaggattt tgtgagtgta agactggaac gacagggcct
     2161 aaatgtgatg agtgtctgcc aggaaattcc tggtactacg gctgtcaacc taatgtctgc
     2221 gacaatgagc tcctgcactg ccagaatgga gggacctgcc acaacaatgt gcgctgtgtg
     2281 tgcccagacg cctacaccgg catcctctgt gagaagctac ggtgcgaaga ggcgggcagc
     2341 tgtggctccg actctggcca gggagcaccc ccgcggggct cccctgcact gctgctgctg
     2401 accgtgctgc tggggactgc cagtcccctg gttttctagg ggtcacaccc agccctccga
     2461 caggcctgtg ctgtggggga agcagacaca acccaagcga ttgctcccga catagaaaac
     2521 acgcacaccc actccaacac agtgtataga agaagagggc ctaactgaac taagccatat
     2581 ctctcggaac tggacagcac agcgcgcatc atcggagtca agactgttca tcactgactc
     2641 cagaggaatt ggcagctgtc gctatcgtca ctgcaaatct catcgccagc tgcagagctg
     2701 attgcggatt agaaaggctg cgagagcgcc ccccagaagg aaagacaaac aaacaacaaa
     2761 ctgatcaacc aacctaaaaa acattcgcta ctctaccgtg gtgcacccga gtaccgctct
     2821 gcccagtgtg tggaccaacc aaataagagc attcttcgct gtcaggtgca ttgtgggtat
     2881 aaggaaatct gttacaagct gccatattgg cctgcttcag cctccccctt ccccccaaat
     2941 cccttccaac ctgtgcttta gtgaacgttg ctctgtaacc cttgttggtt gaaagatttc
     3001 tttgtctgat gttagtgata cacatgtgta acagccccct ccaaagcgca agccagtcat
     3061 accccctgta tattttagca gcactgcgat cccagtgcca gctcccatcc actttgcaag
     3121 agtggctaga ggaaaagaga aagtgtatct atccttttgt attcaaatga agttattttt
     3181 cttgaaatac tgtaatatgt agattttttg taatattgcc aatttatgtt accagacaat
     3241 ctgttaatgt atcgaattcg aatcagcaaa gactgacgtt tgattttttt ggtcctcttt
     3301 ggttttgttt cgtttcgtcg tgcagagatt tctctgtaag ggcaacgagc gtgctggcat
     3361 caaagaatat cggtttacat atagcaagtg taataagatt ccaccaaagg acattctaaa
     3421 tgttttcttg ttgctttata acactggaag acttaaagaa taaaatttcc tgcagaaatg
     3481 atatcaggaa attgtatggc cgtttcttga gatgaaagga gaaaccaccc acagttttcc
     3541 agtcaagtca ctgattttgt gtggactgaa cacagtcggc cgacaacttt agtaacccag
     3601 gaagatggat ggatggtcac tagcttggac aacgtctgca aaatatgaga ctattttcca
     3661 cctgggaaaa aattataacc acaaaaacag agagaaagaa gtatctaagt gattgccaag
     3721 attatgccaa agcctgttgg cagagcacta agagactttt atttttaagt catgctattt
     3781 tcacagattt atggtgatca tgtgactcta gggatgccga tctatgtatc cttccaaata
     3841 cagtgtttac atggagtatc ataagaggcc acctggggaa ccagggcagc agcagggaaa
     3901 ttgagtgatt agcaatttga ctttgaatat attctaagta tttaaatgaa atatcaaaat
     3961 atagagcagc aagtagacat aactgctgtt cctggaaata aagtctgttt caagtactgc
     4021 ccaaggtgta ataaattctt gtttctgcct tttattaggc caattactgt acaagacagc
     4081 agagggagct gggcgggggt ggaggggtgg agagagagac actgtgaagt tttggagggg
     4141 gctgaaaccg tgtatgttca atcccagcat actgccaccc tgcaggtgac aaatgtgtgg
     4201 gcaagggcat ctcttggaat cagaaataat tatgaggcca aaccagaaga ttaaagacaa
     4261 tgaagtccta catgacttgg tgggacaata acctatgaca gtattaggtc agaagcctca
     4321 ttccaggctg aattctccac cctactgcca gtctcggctg aaccgcgggg ggaggactgt
     4381 cttctgataa ataacctgag tcaaaactag atgaaggaac agcgtgtctt attggttttg
     4441 ttcccagaaa agccaattca aagaaggcaa taaaaggtaa gcaggtaatt cctgctctgc
     4501 ctgccacccc acgtccgagt cgattgaatg tttgttattc aaaccaacat cctcttttga
     4561 tataagaaat agggaaagat ggagataaat tagtgctttg gctcagtgcc agagtagcca
     4621 actagaaatg acagatttac ataagaagca taaatagaaa attatattcc cggctcacca
     4681 aagaacacac atgaaaattc taatagcatc cagagtgtga gattacttct aatgaggtgg
     4741 atttctgata ttaaaatgga gtttaagttg tcttatagtt tattagcaca aaccaaaggc
     4801 agaccgtgtt atttctggca atggtgcact ttaccattat ccggtcacag ctttgtcaca
     4861 atgatcagga atcagacact gcacaattca atatgtggga ttccaaaagc taattctgaa
     4921 gtttaatgaa ggcctgattt aaatcaactc atctgcattt tatctctacg aggctataaa
     4981 aatctaaatt gatgaggaat atcttgcatt cagtatattt agatatagtt ctctgaattt
     5041 cttgaagtga tgtgatctgc ttttaataaa aattcacttt taggt
//
