LOCUS       NM_001415884            1855 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus netrin 5 (Ntn5), transcript variant 1, mRNA.
ACCESSION   NM_001415884
VERSION     NM_001415884.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1855)
  AUTHORS   Garrett,A.M., Jucius,T.J., Sigaud,L.P., Tang,F.L., Xiong,W.C.,
            Ackerman,S.L. and Burgess,R.W.
  TITLE     Analysis of Expression Pattern and Genetic Deletion of Netrin5 in
            the Developing Mouse
  JOURNAL   Front Mol Neurosci 9, 3 (2016)
   PUBMED   26858598
  REMARK    Publication Status: Online-Only
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000001.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN06621351,
                              SAMN17050751 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation, expression,
                                         longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-122               JAXUCZ010000001.1  105293408-105293529
            123-767             JAXUCZ010000001.1  105295114-105295758
            768-956             JAXUCZ010000001.1  105298560-105298748
            957-1106            JAXUCZ010000001.1  105298919-105299068
            1107-1160           JAXUCZ010000001.1  105299389-105299442
            1161-1241           JAXUCZ010000001.1  105299833-105299913
            1242-1855           JAXUCZ010000001.1  105301550-105302163
FEATURES             Location/Qualifiers
     source          1..1855
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..1855
                     /gene="Ntn5"
                     /gene_synonym="RGD1565197"
                     /note="netrin 5"
                     /db_xref="GeneID:308587"
                     /db_xref="RGD:1565197"
     exon            1..122
                     /gene="Ntn5"
                     /gene_synonym="RGD1565197"
                     /inference="alignment:Splign:2.1.0"
     CDS             89..1648
                     /gene="Ntn5"
                     /gene_synonym="RGD1565197"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; netrin-1-like protein"
                     /codon_start=1
                     /product="netrin-5 isoform 1 precursor"
                     /protein_id="NP_001402813.1"
                     /db_xref="GeneID:308587"
                     /db_xref="RGD:1565197"
                     /translation="MADYRTLFSPSGTGSAVTVLVALSLLLLLSQATSDPCYDPGGRP
                     RFCLPPVTQLVGKAAAPCSQTCALPADSPDPVCNGTLTLDLDGSFLLTSVTLRFCTAG
                     PPALVLSAAWAIGGPWRPLWRRPAWPGVLGGPKKVTFHSPPGPKTRIVASYLRVELGG
                     KAGLVTTGVRGRCQCHGHAARCAARAQPPRCRCRHHTTGPGCESCRPSHRDWPWRPAT
                     PQHPHPCLPCSCNQHARRCRFNSELFRLSGGRSGGVCERCRHHTAGRHCHYCQPGFWR
                     DPSQPITSPKACRACQCHPIGATGGMCNQTSGQCSCKLGVTGLTCNHCGPGYQQSRSP
                     RMPCQRIPEATTALATTPVASRSDPQCQGYCNVSVSSVHMNLQKYCQQDYVLHARVAE
                     SAQVSASSSLSSLSEAVGPEWWRLAVHVLAVFKQRAWPVRRGSQEAWVPRADLSCGCL
                     RLRPGADYLLLGRAAENHTDPAHLILNRHSLALPWRPRWAGPLRRLQQKERGGACRGL
                     LPPTRSPGPRN"
     exon            123..767
                     /gene="Ntn5"
                     /gene_synonym="RGD1565197"
                     /inference="alignment:Splign:2.1.0"
     exon            768..956
                     /gene="Ntn5"
                     /gene_synonym="RGD1565197"
                     /inference="alignment:Splign:2.1.0"
     exon            957..1106
                     /gene="Ntn5"
                     /gene_synonym="RGD1565197"
                     /inference="alignment:Splign:2.1.0"
     exon            1107..1160
                     /gene="Ntn5"
                     /gene_synonym="RGD1565197"
                     /inference="alignment:Splign:2.1.0"
     exon            1161..1241
                     /gene="Ntn5"
                     /gene_synonym="RGD1565197"
                     /inference="alignment:Splign:2.1.0"
     exon            1242..1855
                     /gene="Ntn5"
                     /gene_synonym="RGD1565197"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaaccccca ctggcctggg cctgaggaca gccactctca ttcctcctga ttgcctacca
       61 agtgctgcgg ctacagaaga gggtggggat ggcagactac aggacactct tctcgccttc
      121 aggtaccggc tctgctgtga ccgtgctcgt tgccctcagc ctcttgctcc tccttagcca
      181 ggccacctca gacccatgtt atgacccagg agggcgtcct cgcttttgcc tcccaccagt
      241 gacccagttg gttggcaagg cagcagcccc ctgctctcag acctgtgctc ttcctgcaga
      301 cagccctgac cctgtctgca atggcactct gaccctggac ctggacggct ccttcctctt
      361 gacgtctgtc accctgcgtt tctgcaccgc aggacctcca gccctggttc tttctgctgc
      421 ctgggccatt ggaggcccct ggaggccact atggcgcagg cctgcctggc ctggggtttt
      481 ggggggtccc aagaaggtaa cctttcactc cccaccaggc cccaagacca ggatagtggc
      541 cagctacctc cgtgtggagc tcggggggaa agcagggctg gtgaccactg gagtaagagg
      601 ccgctgccag tgccatggcc acgctgcccg ctgtgccgct cgggcccagc ccccacgctg
      661 ccgctgccgc caccacacca ctggcccagg gtgtgagagc tgtcgcccat cccatcgaga
      721 ctggccctgg agacctgcca caccccagca ccctcacccg tgcttgccat gctcctgcaa
      781 tcagcatgcc aggcgctgcc ggttcaactc cgagctattc aggttgtcag gtggccgcag
      841 cgggggtgtg tgcgagcggt gccgccacca cacagccggg cggcactgtc actactgcca
      901 gccggggttc tggagggacc caagccagcc catcactagt cccaaggcat gcagggcctg
      961 ccagtgtcac ccaattggag caacaggagg gatgtgcaac cagaccagtg gccagtgctc
     1021 ctgcaagtta ggggtcacgg gcctgacatg caatcactgt ggtcctgggt accagcagag
     1081 ccgctcaccc aggatgccct gtcaacgaat tccagaagca acaactgccc ttgctactac
     1141 tcctgttgca tcgcgatcag acccacagtg tcaaggctac tgcaatgtct ccgtcagcag
     1201 tgtgcacatg aaccttcaga agtactgtca gcaggactac gttctgcacg cccgggttgc
     1261 agagtccgca caggtttcag catcatcgtc gttgtcctcg ttgtccgagg cggtaggacc
     1321 cgaatggtgg cggctggccg tgcacgtgct ggctgtgttc aagcagcgtg cgtggcccgt
     1381 gcgccgcggc agccaggagg cctgggtgcc ccgcgctgac ctgtcctgcg gctgcctgcg
     1441 cctgcgccct ggcgctgact acctcctcct gggcagagct gcggagaacc acactgaccc
     1501 cgcgcacctc atcctgaacc gccacagcct cgcgctgccc tggaggccac gttgggccgg
     1561 gccgctgcgg cggctgcaac agaaggagcg cggtggcgcc tgccgaggcc tgctgccacc
     1621 cactcggagc cctgggccta ggaactaaag tgagctactc tgtaaggtgt gagtcagcag
     1681 agccaatcag aagcagcagc gctcgtgact ccgcatgcgc ctctgccacg tggacgcgag
     1741 cgatattgag caaaaggctg gaagccacaa gcagaccttt gggaccggaa gttactgctt
     1801 tggcctgtga gccttaaagg ttatttgtca caataaagtc tcgtgtcttg tggaa
//
