LOCUS       NM_053732               2428 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus netrin 3 (Ntn3), mRNA.
ACCESSION   NM_053732 XM_001057434 XM_343867
VERSION     NM_053732.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2428)
  AUTHORS   Kang,J.S., Yi,M.J., Zhang,W., Feinleib,J.L., Cole,F. and
            Krauss,R.S.
  TITLE     Netrins and neogenin promote myotube formation
  JOURNAL   J Cell Biol 167 (3), 493-504 (2004)
   PUBMED   15520228
  REMARK    Erratum:[J Cell Biol. 2023 Oct 2;222(10):. PMID: 37702713]
REFERENCE   2  (bases 1 to 2428)
  AUTHORS   Manitt,C., Colicos,M.A., Thompson,K.M., Rousselle,E., Peterson,A.C.
            and Kennedy,T.E.
  TITLE     Widespread expression of netrin-1 by neurons and oligodendrocytes
            in the adult mammalian spinal cord
  JOURNAL   J Neurosci 21 (11), 3911-3922 (2001)
   PUBMED   11356879
REFERENCE   3  (bases 1 to 2428)
  AUTHORS   Wang,H., Copeland,N.G., Gilbert,D.J., Jenkins,N.A. and
            Tessier-Lavigne,M.
  TITLE     Netrin-3, a mouse homolog of human NTN2L, is highly expressed in
            sensory ganglia and shows differential binding to netrin receptors
  JOURNAL   J Neurosci 19 (12), 4938-4947 (1999)
   PUBMED   10366627
REFERENCE   4  (bases 1 to 2428)
  AUTHORS   PuschelPuschel,A.W.
  TITLE     Divergent properties of mouse netrins
  JOURNAL   Mech Dev 83 (1-2), 65-75 (1999)
   PUBMED   10381568
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On or before Dec 17, 2009 this sequence version replaced
            XM_001057434.1, XM_343867.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EV767493.1, SRR21887623.2141336.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840115 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1470              JAXUCZ010000010.1  13743086-13744555   c
            1471-1659           JAXUCZ010000010.1  13742826-13743014   c
            1660-1809           JAXUCZ010000010.1  13742584-13742733   c
            1810-1860           JAXUCZ010000010.1  13742409-13742459   c
            1861-1935           JAXUCZ010000010.1  13742218-13742292   c
            1936-2428           JAXUCZ010000010.1  13741459-13741951   c
FEATURES             Location/Qualifiers
     source          1..2428
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..2428
                     /gene="Ntn3"
                     /gene_synonym="Ntn2l"
                     /note="netrin 3"
                     /db_xref="GeneID:114524"
                     /db_xref="RGD:619811"
     exon            1..1470
                     /gene="Ntn3"
                     /gene_synonym="Ntn2l"
                     /inference="alignment:Splign:2.1.0"
     CDS             543..2285
                     /gene="Ntn3"
                     /gene_synonym="Ntn2l"
                     /note="netrin 2-like"
                     /codon_start=1
                     /product="netrin-3 precursor"
                     /protein_id="NP_446184.1"
                     /db_xref="GeneID:114524"
                     /db_xref="RGD:619811"
                     /translation="MPTWPWGLLLTAGTLSAALSPGLPASADPCYDEAREPRCCTPGL
                     VNAALGREVLASSTCGRPANHVCDPSDPQRAHSADLLTSAPGTASPLCWRSDVLQRAP
                     FNVTLTVPLGKAFELVFVSLRFCSAPPTSVALLKSQDHGRSWVPLGFFSSSCSLDYGR
                     LPAPADGPAGPGPEALCFPAPQAQPDGGGLLAFSVQDGSPQGLDLDNSPVLQDWVTAT
                     DIRIVLTRPAIQGDTRDGGVTVPYSYSATELQVGGRCKCNGHSSRCLMDTHGHLVCDC
                     QHGTEGPDCSRCKPFYCDRPWQRATGQEAHACLACSCNGHARRCRFNMELYRLSGRRS
                     GGVCLNCRHNTAGRHCHYCREGFYRDPGRVLSDRRACRACDCHPVGAAGKTCNQTTGQ
                     CPCKDGVTGLTCNRCAPGFQQSRSPVAPCVKTPVPGPTEESSPVEPQDCESHCRPARG
                     SYRISLKKFCRKDYAVQVAVGARGEARGAWTRFPVAVLAVFRSGEERARRGSSALWVP
                     TLDAACGCPRLQPGRRYLLLGDGPGAAAGSPAGRGPGLSAARGSLVLPWRDAWTRRLR
                     RLQRRERRGRCGTA"
     exon            1471..1659
                     /gene="Ntn3"
                     /gene_synonym="Ntn2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1660..1809
                     /gene="Ntn3"
                     /gene_synonym="Ntn2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1810..1860
                     /gene="Ntn3"
                     /gene_synonym="Ntn2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1861..1935
                     /gene="Ntn3"
                     /gene_synonym="Ntn2l"
                     /inference="alignment:Splign:2.1.0"
     exon            1936..2428
                     /gene="Ntn3"
                     /gene_synonym="Ntn2l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgtctgaatc tgcttctgat tctggctgtc gggacaaggc cccctcccct ccttccttcc
       61 cggcccgagc agctccgccc ctggctagga ccaggcttgc tcctgctgag ccccccaccc
      121 ccttctggca cagctcctct gctcttgctg cagccagaag aaggcggcag ccccggcgcc
      181 ccaggccccg cccgcccagg gcccttcccg ggaggccggg agacctgctc ctcctggccc
      241 tccgtgggtg agtgctggcg gccggcggcg ggtggggcct ccgcgggcgg aggcaccggg
      301 agcgggggcg actcctgtca acgctccagg cctagcagga ggactcgcca acatccctgc
      361 tcctgtgctc ggccccaggc gtgcgggtgg ctgctcccac ttctggcctg tgctggggcg
      421 gtcctggggc tctgctatct tggcactgaa gacccggcac gcagagtatc ggactaggct
      481 ctctcctcga gggcagaatc gttgggcgga agctggctgg ttgactcaca gcggccacgg
      541 ccatgcccac ctggccctgg gggctgctgc tgaccgcggg cacgctctcc gctgcactga
      601 gcccagggct gccggcctct gccgacccct gctatgatga ggcgagggag cctcgctgtt
      661 gtactcctgg cctagtgaac gctgctctgg gccgagaggt gctggcgtcc agcacgtgcg
      721 ggaggccggc caatcacgtc tgcgatccct cggacccgca gcgggcacat tctgcagacc
      781 tcctgacctc agctccgggc actgcaagtc ctctctgttg gcgctccgat gtgctgcaac
      841 gggcaccttt caacgtaacc ctcacggtgc ccctggggaa ggcttttgag ctagtcttcg
      901 tgagcctgcg cttttgctca gctcccccaa cctccgtggc cctgcttaag tctcaggacc
      961 atggccgcag ctgggtcccc ctgggtttct tctcttccag ctgtagcctg gactatggcc
     1021 gtctgcctgc tcctgctgat ggccctgctg gtccagggcc agaagccctc tgtttcccag
     1081 ccccccaggc tcagcctgat ggtggaggcc ttctggcctt cagtgtgcag gatggcagcc
     1141 cacagggcct ggacctggac aacagccccg tgctccaaga ctgggtgact gccacagata
     1201 ttcgcatagt actcacaagg cctgccattc agggagacac cagggacggt ggggtcacag
     1261 tcccctactc ctactcagcc actgagcttc aggtgggagg tcgatgcaag tgcaatgggc
     1321 attcctcacg gtgtctgatg gacacccatg gccacctggt ctgcgactgc cagcatggta
     1381 cagagggccc tgattgcagc cgctgcaagc ccttctactg cgacaggcca tggcagcggg
     1441 ctacagggca ggaagcccac gcttgccttg cttgctcctg caatggccac gcccgaagat
     1501 gccgcttcaa catggagctg taccgactgt ccggccgccg cagtggtggg gtgtgcctca
     1561 attgccggca caatactgct ggtcgtcact gccactactg tcgggagggc ttctatcgtg
     1621 acccaggccg tgtcctgagt gaccgtcgtg cttgcagagc ttgtgactgc cacccagttg
     1681 gtgctgctgg caaaacctgt aaccagacca caggccagtg tccctgtaag gatggtgtta
     1741 ccggcctcac ctgtaaccgc tgcgccccag gtttccagca gagccgttct cctgtcgcac
     1801 cttgtgttaa gactcctgtc cctggaccca ctgaagaaag cagtcctgtg gagccacagg
     1861 actgtgagtc acattgcaga cctgcgcgtg gcagttaccg aatcagcctg aagaagttct
     1921 gccgaaagga ctatgcggtg caagtggcag tgggtgcgcg cggcgaggcc cgcggcgcgt
     1981 ggacacgctt tccggtagcg gtgcttgctg tgttccgcag cggcgaggag cgcgctcggc
     2041 gcgggagcag cgcgctgtgg gtaccaaccc tagatgcggc ttgcggttgc ccgcgcctcc
     2101 agcccggccg gcgctacttg ctgctgggag atgggcccgg ggctgcagct gggagcccag
     2161 caggccgggg accggggctc agtgctgccc gtggaagtct cgtgctgcct tggagggacg
     2221 cctggactcg gcgcctgcgg aggctgcaga ggagagagcg gcgggggcgc tgcgggaccg
     2281 cttgaacctg caagctgggc gtggactggg cgggctcagt tctcttatca ctgggcgcgg
     2341 cgcgttcaac agagcattag cctgctggaa gtgtcacgtg catcgccatc taatttcccc
     2401 catccccata cccgcttgaa acttattt
//
