LOCUS       NM_001134887            5934 bp    mRNA    linear   ROD 22-SEP-2024
DEFINITION  Rattus norvegicus 5'-nucleotidase domain containing 3 (Nt5dc3),
            mRNA.
ACCESSION   NM_001134887 XM_343193
VERSION     NM_001134887.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5934)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 5934)
  AUTHORS   Ghai,R., Bugarcic,A., Liu,H., Norwood,S.J., Skeldal,S.,
            Coulson,E.J., Li,S.S., Teasdale,R.D. and Collins,B.M.
  TITLE     Structural basis for endosomal trafficking of diverse transmembrane
            cargos by PX-FERM proteins
  JOURNAL   Proc Natl Acad Sci U S A 110 (8), E643-E652 (2013)
   PUBMED   23382219
REFERENCE   3  (bases 1 to 5934)
  AUTHORS   van den Akker,E., Vankan-Berkhoudt,Y., Valk,P.J., Lowenberg,B. and
            Delwel,R.
  TITLE     The common viral insertion site Evi12 is located in the
            5'-noncoding region of Gnn, a novel gene with enhanced expression
            in two subclasses of human acute myeloid leukemia
  JOURNAL   J Virol 79 (9), 5249-5258 (2005)
   PUBMED   15827139
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001134887.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.911275.1,
                                           SRR26360176.1246571.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-307               JAXUCZ010000007.1  23078078-23078384
            308-492             JAXUCZ010000007.1  23098596-23098780
            493-567             JAXUCZ010000007.1  23106425-23106499
            568-623             JAXUCZ010000007.1  23107153-23107208
            624-714             JAXUCZ010000007.1  23111609-23111699
            715-852             JAXUCZ010000007.1  23112698-23112835
            853-913             JAXUCZ010000007.1  23116013-23116073
            914-1016            JAXUCZ010000007.1  23116477-23116579
            1017-1118           JAXUCZ010000007.1  23116719-23116820
            1119-1200           JAXUCZ010000007.1  23118768-23118849
            1201-1287           JAXUCZ010000007.1  23119887-23119973
            1288-1428           JAXUCZ010000007.1  23121088-23121228
            1429-1493           JAXUCZ010000007.1  23128330-23128394
            1494-5934           JAXUCZ010000007.1  23130459-23134899
FEATURES             Location/Qualifiers
     source          1..5934
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q13"
     gene            1..5934
                     /gene="Nt5dc3"
                     /note="5'-nucleotidase domain containing 3"
                     /db_xref="GeneID:691922"
                     /db_xref="RGD:1593358"
     exon            1..307
                     /gene="Nt5dc3"
                     /inference="alignment:Splign:2.1.0"
     CDS             106..1746
                     /gene="Nt5dc3"
                     /codon_start=1
                     /product="5'-nucleotidase domain-containing protein 3"
                     /protein_id="NP_001128359.1"
                     /db_xref="GeneID:691922"
                     /db_xref="RGD:1593358"
                     /translation="MATVAAAARGVGARAVAGLRSGSGAVARGRPPADCARRLCTAPA
                     APAAVDMKSYLWARYHEAKRSTDELVPSIMNNLLNPDAIFSNNEMSLSDIEIYGFDYD
                     YTLVFYSKHLHTLIFNAARDLLINEHRYPAEIRKYEYDPNFAIRGLHYDVQRAVLMKI
                     DAFHYIQMGTVYRGLSVVPDEEVIDMYEGSHVPLEQMSDFYGKSSHGNTMKQFMDIFS
                     LPEMTLLSCVNEHFLKNNIDYEPVHLYKDVKDSIRDVHIKGIMYRAIEADIEKYICYA
                     EQTRAVLAKLAAHGKKMFLITNSPSSFVDKGMRYIVGKDWRDLFDVVIVQAEKPNFFN
                     DKRRPFRKVNEKGVLLWDKIHKLQKGQIYKQGNLYEFLKLTGWRGSKVLYFGDHIYSD
                     LADLTLKHGWRTGAIIPELRSELRIMNTEQYIQTMTWLQTLTGLLEQMQVHRDAQSQL
                     VLQEWKKERKEMREMTKSFFNAQFGSLFRTDQNPTYFLRRLSRFADIYMASLSCLLNY
                     DVNHTFYPRRTPLQHELPAWSDSPSAFKAPLLQEAQAK"
     exon            308..492
                     /gene="Nt5dc3"
                     /inference="alignment:Splign:2.1.0"
     exon            493..567
                     /gene="Nt5dc3"
                     /inference="alignment:Splign:2.1.0"
     exon            568..623
                     /gene="Nt5dc3"
                     /inference="alignment:Splign:2.1.0"
     exon            624..714
                     /gene="Nt5dc3"
                     /inference="alignment:Splign:2.1.0"
     exon            715..852
                     /gene="Nt5dc3"
                     /inference="alignment:Splign:2.1.0"
     exon            853..913
                     /gene="Nt5dc3"
                     /inference="alignment:Splign:2.1.0"
     exon            914..1016
                     /gene="Nt5dc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1017..1118
                     /gene="Nt5dc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1119..1200
                     /gene="Nt5dc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1201..1287
                     /gene="Nt5dc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1288..1428
                     /gene="Nt5dc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1429..1493
                     /gene="Nt5dc3"
                     /inference="alignment:Splign:2.1.0"
     exon            1494..5934
                     /gene="Nt5dc3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtgcctggg ccgcgctgcc acttgctcag acgtaggaac tgccggcgtg cgtccgggag
       61 cctcctgacg ctggctgtcc atgtctctgg cagcctagtg gcagcatggc cacggtggca
      121 gcggcggccc gcggggtcgg ggcgagggcg gtggcggggc tgcgaagcgg cagcggggct
      181 gtggctcgag gacgaccgcc cgcggactgc gctcggcgcc tgtgcactgc cccggctgcc
      241 ccggctgctg tggacatgaa aagctacctg tgggcgcgct accacgaggc gaagaggagc
      301 acggacgaat tggttccctc catcatgaac aacttgctga atccagatgc cattttctcg
      361 aacaatgaga tgagcttgtc ggacatcgag atatatggct tcgactacga ttacaccctg
      421 gtgttctatt ccaaacatct ccacacgctc atcttcaacg ctgcccggga ccttctcatc
      481 aacgaacaca ggtatcctgc agaaatcagg aagtatgagt atgacccaaa ctttgccatc
      541 cgtggactcc attacgacgt ccagcgggca gtgttgatga agattgatgc ctttcattac
      601 atccagatgg gaacggtgta cagaggcctc agtgttgttc ctgatgaaga ggtcattgac
      661 atgtacgagg ggtcccatgt gccgctggag cagatgagtg acttttatgg aaagagttct
      721 cacgggaaca ccatgaagca gttcatggac atcttctcac tgcccgagat gaccctgctg
      781 tcctgtgtga acgagcactt cctgaagaac aacatcgact atgagcctgt gcacttgtac
      841 aaagatgtca aggactccat acgggatgtc cacatcaagg gaataatgta ccgagctatc
      901 gaagcggaca ttgagaagta catctgttat gctgagcaga cccgcgcggt gttggctaaa
      961 ttggctgccc acggcaagaa gatgttcctc attaccaata gccccagtag ctttgtagac
     1021 aaagggatgc ggtacatcgt ggggaaggac tggcgggacc ttttcgatgt ggtcatagtt
     1081 caggccgaga aaccgaactt cttcaatgac aagcggagac ctttccgaaa ggtgaacgag
     1141 aaaggtgtct tactctggga taaaatccac aagctgcaga aaggccagat ctacaagcag
     1201 ggcaatttgt atgaattttt gaagctcact ggatggagag gatccaaagt actgtatttt
     1261 ggtgaccaca tatacagtga tctggcggat ctgaccctaa agcacggctg gcgcactgga
     1321 gcgatcatcc ccgagctccg ctccgagctc agaatcatga acacggagca gtacatccag
     1381 accatgacgt ggctgcagac cttgaccggg ctcttggagc agatgcaggt ccacagagat
     1441 gctcagtcac agctggtttt gcaggagtgg aaaaaggaga ggaaagagat gagagaaatg
     1501 accaaaagtt tcttcaacgc ccagtttggg agtttgttcc gcacagatca gaatccaacc
     1561 tacttcctga ggcgcctgtc aaggttcgcg gacatttaca tggcatctct gagctgcctc
     1621 ctgaactacg atgtcaacca cacattctac cccaggagga ctcccctgca gcacgagctt
     1681 cctgcgtggt cggacagccc atctgccttc aaagcccctc tgctgcagga ggctcaggct
     1741 aagtaaccct gtgtttgcct gaggaaaaag ccagaagcat tcgtggcctc acagagtgtc
     1801 aagtagcctg agagttgctt cccagagtca gatgcgcctt ttgtattttt tctaccttac
     1861 catgaatact gtcctgtcca ggttgagata ggagctggcc acctggggtc tcctggccct
     1921 tctccacaca acactgattc agtcttgttt aatgtggaac taacaacgtc aggcctcttg
     1981 acgagcgcac cctcttgatg gctgtctgtg ttcagtaggt caagagtgga caccttgatt
     2041 ctgtgaggca tttcttggtt gtttacacgc ggttacattg aggaccacaa gggcatggtg
     2101 aaatgcagag acagtaggaa gcaggttgct gaggaagcag ccctacctgc ggccagttcc
     2161 ctggtcttct ggtcctaggc tttcaaagac actttgccgt agaaatcaca gcctaccgga
     2221 acgactttgc tgaggaagaa caagaagtgt ttgtcctcag tgtgcacttg ctttgtctgc
     2281 ccgaaggggt gacggatggg ttccctcctc cccaggaaag gggtaaggac acagccactc
     2341 gagctaaagt tgcctttcag ccagtgggtc ggacatatta gaggacaaca aagacgcaaa
     2401 gccttgggac tcggcctgtg gccagcgcta tcccgtgtgc taggccatcc agcatagaca
     2461 gctgctgatg ggaatgccat gtttcatgcc gagagccaag ctggggaaat ctcctctgcc
     2521 cttccccctc tggagggaag actccttatt acgtctgttt gcagtatctt tgaacacatt
     2581 tgggcaccac aggagtggct gctgtcactg acagttctgt tcaatggcgt tttcattgca
     2641 aaggccatgg aagtgctggt ggccagatta gccttgtctc ctgtggcctg acgccttgta
     2701 agcttttaca ctaacgtggc actgctgctg ccgccgccat agctgctgct tctttccctt
     2761 gccccctcct taacccccta tccctcaccc tcacccccag ttagggtctt gctatggagc
     2821 ctgggctagc cttggactca atcctcctgc ctcagtctcc ggagtctcgt attacaggca
     2881 tgcaaaagtg tgaaggcggc aggagcatga aggagacgtg tggcgagtgc ttgctctttg
     2941 gcatctttat ggcagtaagt agatctagcc ggctgatgag gggccgctcc cagccccatc
     3001 gctgttgcag gctgcctgcc gatgtgcaga agctaaatga accgtgtagc attcactgtg
     3061 aagccctgtg ttagcatggt gtctttgctg ttgctagtgt tgaacgttgt ttcgaaggtg
     3121 acccttcagg cccctccccc tctcgtgtgt tgtattctaa gcaccggggt tcagcattct
     3181 gctccttttc agaacaggat gggtattttt ctgttccggt gttcctgttc cccagtgtta
     3241 gccaccaggg ggttttggca actgctccgt gtcagagtcc taaaaggggc gtgcttggga
     3301 tgcccctgac tcgtgctttg gggagcagag tgaagctaaa aacagtgact ctttgatcgg
     3361 atcctgtatt cttcgggtgt agactagatg ccagtttcca ggtttgtcta ctcaggatcg
     3421 aggcagagct gctctcttaa tgcctacagt aggcgaccaa agcctggggg ggggaggggg
     3481 gggacatctg gctgtgagaa ctgcatctta cagcctgctc tgtatacaag gatcacagtc
     3541 tcgaggccac caagctcgac cgtactgggt cagccgggac gtcacacccg acacacagcc
     3601 gggcagactg cacactcaaa ccgtgctctg gcagagtggc ctggcacggc atcctgcatg
     3661 aagaacaggg gcgtttccac cgtgttccag tcctccgcta gtgcagtcag gacaagtttt
     3721 agcttgtccc tgggactctt ggctggggtc tgacctactg cactggtatc gtgttctttt
     3781 tagagtattc ttttgtgtgc acattgagga cggtatatag gtaaaaggag agtggggttt
     3841 tttccacctt taaaaaatat caaattgtaa accgaacagt aaaaatttta atatctttga
     3901 actatacatt ttttttgaca ttgtttagac tgattttctt agaatcatgt gaacaaaaat
     3961 tcagtctaag ggcagtccct gccagggtga catccagcaa ggccatggtg tcagcagcgg
     4021 ccactggagt ggtttgcact gctggggttt tctcagagtt gctttttcag gggagagctg
     4081 gctttaaaaa tatctcaggt gctgggtgtt tgaagctctt gcttttcctc ctaagatagc
     4141 acaccttcct cttccctccc cctcctccct cctttcttct tccccctctt ccctctcccc
     4201 ttcttttctc ttccccccac ccttcctccc ttcctctcct ctccagcttt ggcctctgct
     4261 ctccacacat gtctgtctct gtcaagtccc caaccctctt cttccttcct aacaccccca
     4321 cccccacacc ttccacaccc ctctttacca ttaatacacc tgccactgat gtggtcagat
     4381 ctcagactaa attaccagtt gctttgaaca catcggccct cttatttatt gcaataaagg
     4441 agaagtgaaa agctgtcgtg cctcctacct aatttagctt tgggtgaact aaatggcttt
     4501 cccctcccct cagcaagtgc taaatacaca gaaattccac tttatccaaa tgctcacttg
     4561 ctgccagaaa cctacttgag gctcttgact aaaatgctca aaagactgaa tggccagatg
     4621 cagggagggc tccttgatag ttctctcccg ctgctcaggg agcccatcca ttctttctcc
     4681 gcccaaggat tttctttagt ttgttatttt tgggacgggg tctcagtgtg cagctctggc
     4741 tggtctggaa gttactatgt agagcaggtt agccctcaga gatatcccct gcttccacag
     4801 agcgttgtga taagaagtgt gaaccaccag acctggtgtg atttcctttt gttgggtggg
     4861 ttggtttttg ttttattttt tctttctcct cttttttctt cttgttattt atttacttat
     4921 gtctttggca ttaatatttg ggagcaaggt tctttagttt agctaacgtt tcagaccaca
     4981 gataggttaa acaacgggaa ggaagaggag gggggccttt tctaattagg gaaccatttt
     5041 caacttcgaa ggccctccca ttgctgcatc tgcaggaatg gatccactgt tccatgggga
     5101 tttgattcac cagcacagac tgtgggtgct ggctcctgct tggatggcaa gattctttgc
     5161 ttagagcatg tggggtcttt cctgcttggg tacagttagt gtaagcgcta agccactgtg
     5221 ccgtgctccc ttaggaaccc tgtctccccc tctacacggc cacagccagt gctatgtgag
     5281 tttgcagtac ctgccaagat tgcttcactg tggatttgag ctgtgagctg ttaccctttt
     5341 tatgactctg ctgggctcag gactgaaggc tgattcatcc caggggctgg gagtggtgcg
     5401 ggctgatgtg tttctctttg agaatttcct tgacgcgcag ccttgctttg ctccggatca
     5461 catgcctttc ctgcagtgta taatctgtga ctgttcccta tgaagggaca gggcctggtc
     5521 tctccaacat tactttgggg ctagctccag agctcccttt agggctacca agaccttctt
     5581 gtgtttgcct tgtgttgcag cacccctccc ccgcaactag tttgcccctc cttgtcccag
     5641 atgtggatcc cagcagtgaa cctctcaaga ccttcctgca tgaaactttt tgtctccagt
     5701 ctgctcctcc caaagtgctc ctgcattgtt tttctctgtt agcacaggct tgagctccga
     5761 tgtaggccca ttccctaatt gtgtcatgga acgactgtac ctgtgtggca tcaggcatga
     5821 caaatgcaaa gtaggtttac tatttattcg gaatgtgaat ttgctattta ttctacatgt
     5881 tgattgtcta tgttgtgata atgaactcaa agccaaataa aagcttgaat tgta
//
