LOCUS       XM_039098600            2153 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus 5'-nucleotidase domain containing 1
            (Nt5dc1), transcript variant X2, mRNA.
ACCESSION   XM_039098600
VERSION     XM_039098600.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086038) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2153
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2153
                     /gene="Nt5dc1"
                     /gene_synonym="Nt5c2l1"
                     /note="5'-nucleotidase domain containing 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 ESTs, 47 long SRA reads, 1 Protein"
                     /db_xref="GeneID:294456"
                     /db_xref="RGD:1305214"
     CDS             197..919
                     /gene="Nt5dc1"
                     /gene_synonym="Nt5c2l1"
                     /codon_start=1
                     /product="5'-nucleotidase domain-containing protein 1
                     isoform X2"
                     /protein_id="XP_038954528.1"
                     /db_xref="GeneID:294456"
                     /db_xref="RGD:1305214"
                     /translation="MLITSSHSDYCKLLGSYILGKDFADLFDIVITNALKPGFFSHFP
                     SQRSFYTLENDEEKDELPSLDKPGWYSQGNAVHLYELLKKMTSKLEPKVVYFGDSMHS
                     DIFPAHHYTNWETVLILEELQGQEMEKPEEAEPLEKRGKYEGPKVKPLNCLSNKWGSY
                     FIDSVSRRGNAEDSLVYTWSSKRISTYSTIAIPNIESIAELPLDYKFTRFSANNSKTA
                     GYYPLVHYTLASQNTDSKIIST"
     polyA_site      2153
                     /gene="Nt5dc1"
                     /gene_synonym="Nt5c2l1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gaaagtgtta tttctatgat aactactttg acctgccagg ggctcttctg tgtgccaagg
       61 tggtggactc tttaacaaag aaaattgtgg attcttcttt ccagaaataa aaagaaatct
      121 aggcaaatat gtgtaccgct gccctgagtc tgtaaaaaag tggcttcaac agataaagga
      181 tgctgggaaa attactatgt tgatcactag ttctcacagt gattactgta aacttcttgg
      241 cagttacatc cttgggaagg actttgcaga cctttttgac attgtgatta caaacgcatt
      301 aaagccagga ttcttctcac atttcccaag ccagaggtct ttctacacgc ttgagaatga
      361 tgaggagaag gatgaactgc catctctgga taagcccggc tggtactccc aagggaacgc
      421 tgtccacctt tatgagcttc tgaagaaaat gaccagcaag cttgaaccga aggtggttta
      481 ctttggtgac agcatgcatt cagacatttt cccagcccat cactatacta actgggagac
      541 agtccttatt ctcgaagagc ttcaggggca agaaatggag aagcctgagg aagcagagcc
      601 tctggagaaa agaggaaaat atgagggacc aaaggtaaag cctttaaatt gcttatctaa
      661 taaatggggc tcatacttta tcgactcagt ctcgagacgg ggaaatgcag aagactcctt
      721 ggtttatacc tggtcctcta agagaatcag cacctacagt acgattgcaa tcccaaacat
      781 tgaatctatt gcagagttac ccctggacta caaatttacg agattctctg caaacaattc
      841 aaaaacagct ggttactatc ccttggtcca ttataccttg gcttctcaaa acacagacag
      901 caaaataatc tctacttaaa aatgaaccaa ccatatgtac agtagacata ccgttttaaa
      961 aagttaattt tccacagcaa tgcagatgtt ttataagaac aatttttcaa tgaaaattga
     1021 ccaaatggat atttgtcagt atgtcttttt aaaatataag taattttata taaatcattt
     1081 taatgtttaa cagttcttgt tatagtaata tttttagtat cctagactaa aagaggacat
     1141 gacgtatttt ctatactggt agttctcaaa actggtagtt ttgagaatct caggattctc
     1201 attgtacatt atcaatacat gcaagtgtgt atttatacat ctacctggtt cagcagtttc
     1261 ctaaacctga tcctcagact aatagcagag caacatagaa ctggaaaatg caaatctgaa
     1321 tgcttcattc caaaccttct gaaacagaaa ctttgggagt gacgtcaaca atgactttta
     1381 agcaagctct ccataaatct gatgctgtat tataatttga gacctagtaa gtaaaccctg
     1441 tgatgagtct tcataccttt aattgaaagt gcaagctgaa ttgataacac cagagtctag
     1501 ggaaaatagg tcactgttcc aagttattag gctttttgct agttcctttt cccccgtaat
     1561 acataaagaa acatgatttc ttaagataac ataaccccat attttagtta aatttatacc
     1621 tattaaggtt aagttccagc tttgtccagg ggaagggagc agaaagaagc actcgacaac
     1681 tgtataggta cacgtcaggt cagaagatgt tctgttccat gaggtttgat tagttaacat
     1741 gtgcaccaga ccatgtttac acaagatgtt tgtaagttcc tgggttttct tctgcctatt
     1801 aacttcactg tccataatgg acaagattaa aaaagtttat cattttttct tggaacttag
     1861 catatgaaaa actattttct taaaatttac aaatattcca ataaatccca actgtactat
     1921 gaggatgtat ttctcagggt aattaaaaag gatacagaac ttatttcttt attttcagta
     1981 tctttgatgt tgattaatca gaatacatat agagatatat ttgatacccg aaatgtcatt
     2041 agagagttat gatgagcaca cacaatcaag cttagggcca aataaaagat aactatcgta
     2101 tgctttaagt agagatttca ctttgcttta aaataaagtt atttttccct ata
//
