LOCUS       NM_001106393            2735 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus 5'-nucleotidase domain containing 1 (Nt5dc1),
            mRNA.
ACCESSION   NM_001106393 XM_001060836 XM_215405
VERSION     NM_001106393.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2735)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Mar 5, 2021 this sequence version replaced NM_001106393.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC162021.1, SRR26360172.876552.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760389,
                                           SAMEA5760434 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-208               JAXUCZ010000020.1  39763424-39763631   c
            209-300             JAXUCZ010000020.1  39757124-39757215   c
            301-372             JAXUCZ010000020.1  39754372-39754443   c
            373-497             JAXUCZ010000020.1  39750430-39750554   c
            498-577             JAXUCZ010000020.1  39747055-39747134   c
            578-662             JAXUCZ010000020.1  39745564-39745648   c
            663-837             JAXUCZ010000020.1  39682432-39682606   c
            838-935             JAXUCZ010000020.1  39680798-39680895   c
            936-1054            JAXUCZ010000020.1  39673574-39673692   c
            1055-1207           JAXUCZ010000020.1  39672370-39672522   c
            1208-1376           JAXUCZ010000020.1  39666925-39667093   c
            1377-2735           JAXUCZ010000020.1  39660707-39662065   c
FEATURES             Location/Qualifiers
     source          1..2735
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20q12"
     gene            1..2735
                     /gene="Nt5dc1"
                     /gene_synonym="Nt5c2l1"
                     /note="5'-nucleotidase domain containing 1"
                     /db_xref="GeneID:294456"
                     /db_xref="RGD:1305214"
     exon            1..208
                     /gene="Nt5dc1"
                     /gene_synonym="Nt5c2l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             116..1501
                     /gene="Nt5dc1"
                     /gene_synonym="Nt5c2l1"
                     /note="5'-nucleotidase, cytosolic II-like 1;
                     5'-nucleotidase domain-containing protein 1-like"
                     /codon_start=1
                     /product="5'-nucleotidase domain-containing protein 1"
                     /protein_id="NP_001099863.2"
                     /db_xref="GeneID:294456"
                     /db_xref="RGD:1305214"
                     /translation="MAQHFSLAACDVVGFDLDHTLCRYNLSESAALIYNSFAQFLVKE
                     KGYDEELLTLTLEDWDFCCKGLALDLEDGTFIKLAADGTVLRASHGTKMMTPEALTEA
                     YGKKEWRHCLSDKRSVSGSDIPCCSGKCYFYDNYFDLPGALLCAKVVDSLTKQNRGQK
                     TFDFWKDVVAGIQHNFKMSAFKENCGFFFPEIKRNLGKYVYRCPESVKKWLQQIKDAG
                     KITMLITSSHSDYCKLLGSYILGKDFADLFDIVITNALKPGFFSHFPSQRSFYTLEND
                     EEKDELPSLDKPGWYSQGNAVHLYELLKKMTSKLEPKVVYFGDSMHSDIFPAHHYTNW
                     ETVLILEELQGQEMEKPEEAEPLEKRGKYEGPKVKPLNCLSNKWGSYFIDSVSRRGNA
                     EDSLVYTWSSKRISTYSTIAIPNIESIAELPLDYKFTRFSANNSKTAGYYPLVHYTLA
                     SQNTDSKIIST"
     exon            209..300
                     /gene="Nt5dc1"
                     /gene_synonym="Nt5c2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            301..372
                     /gene="Nt5dc1"
                     /gene_synonym="Nt5c2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            373..497
                     /gene="Nt5dc1"
                     /gene_synonym="Nt5c2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            498..577
                     /gene="Nt5dc1"
                     /gene_synonym="Nt5c2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            578..662
                     /gene="Nt5dc1"
                     /gene_synonym="Nt5c2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            663..837
                     /gene="Nt5dc1"
                     /gene_synonym="Nt5c2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            838..935
                     /gene="Nt5dc1"
                     /gene_synonym="Nt5c2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            936..1054
                     /gene="Nt5dc1"
                     /gene_synonym="Nt5c2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1055..1207
                     /gene="Nt5dc1"
                     /gene_synonym="Nt5c2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1208..1376
                     /gene="Nt5dc1"
                     /gene_synonym="Nt5c2l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1377..2735
                     /gene="Nt5dc1"
                     /gene_synonym="Nt5c2l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atcaggcccc gccccgctcc gcatcctggc tgcgagtgtc gcttgtcggg tcttggcaac
       61 ttctgctcgc acgctctacc ggccttccgg tctggatacc cgccactgct cttcaatggc
      121 tcagcatttc tccctggccg cctgcgacgt ggtcggcttc gatctcgacc acacgctgtg
      181 ccgctacaac ctgtccgaga gcgccgcgct catttataac agctttgctc agttcttagt
      241 caaggagaaa ggatatgatg aggagttgct cactctgacc ctagaggact gggatttctg
      301 ttgcaagggt ttggcactgg atctggaaga tgggaccttc attaagcttg cggctgatgg
      361 cactgtgctc agggcaagcc acggcaccaa gatgatgact ccggaggcac tgactgaggc
      421 ctatggcaag aaggagtgga ggcactgtct atcggacaaa cgcagtgtgt cgggctctga
      481 cattccttgc tgttcaggaa agtgttattt ctatgataac tactttgacc tgccaggggc
      541 tcttctgtgt gccaaggtgg tggactcttt aacaaagcag aacagaggtc aaaaaacatt
      601 tgatttttgg aaggatgtag ttgctggtat acaacacaat tttaaaatgt cagcctttaa
      661 ggaaaattgt ggattcttct ttccagaaat aaaaagaaat ctaggcaaat atgtgtaccg
      721 ctgccctgag tctgtaaaaa agtggcttca acagataaag gatgctggga aaattactat
      781 gttgatcact agttctcaca gtgattactg taaacttctt ggcagttaca tccttgggaa
      841 ggactttgca gacctttttg acattgtgat tacaaacgca ttaaagccag gattcttctc
      901 acatttccca agccagaggt ctttctacac gcttgagaat gatgaggaga aggatgaact
      961 gccatctctg gataagcccg gctggtactc ccaagggaac gctgtccacc tttatgagct
     1021 tctgaagaaa atgaccagca agcttgaacc gaaggtggtt tactttggtg acagcatgca
     1081 ttcagacatt ttcccagccc atcactatac taactgggag acagtcctta ttctcgaaga
     1141 gcttcagggg caagaaatgg agaagcctga ggaagcagag cctctggaga aaagaggaaa
     1201 atatgaggga ccaaaggtaa agcctttaaa ttgcttatct aataaatggg gctcatactt
     1261 tatcgactca gtctcgagac ggggaaatgc agaagactcc ttggtttata cctggtcctc
     1321 taagagaatc agcacctaca gtacgattgc aatcccaaac attgaatcta ttgcagagtt
     1381 acccctggac tacaaattta cgagattctc tgcaaacaat tcaaaaacag ctggttacta
     1441 tcccttggtc cattatacct tggcttctca aaacacagac agcaaaataa tctctactta
     1501 aaaatgaacc aaccatatgt acagtagaca taccgtttta aaaagttaat tttccacagc
     1561 aatgcagatg ttttataaga acaatttttc aatgaaaatt gaccaaatgg atatttgtca
     1621 gtatgtcttt ttaaaatata agtaatttta tataaatcat tttaatgttt aacagttctt
     1681 gttatagtaa tatttttagt atcctagact aaaagaggac atgacgtatt ttctatactg
     1741 gtagttctca aaactggtag ttttgagaat ctcaggattc tcattgtaca ttatcaatac
     1801 atgcaagtgt gtatttatac atctacctgg ttcagcagtt tcctaaacct gatcctcaga
     1861 ctaatagcag agcaacatag aactggaaaa tgcaaatctg aatgcttcat tccaaacctt
     1921 ctgaaacaga aactttggga gtgacgtcaa caatgacttt taagcaagct ctccataaat
     1981 ctgatgctgt attataattt gagacctagt aagtaaaccc tgtgatgagt cttcatacct
     2041 ttaattgaaa gtgcaagctg aattgataac accagagtct agggaaaata ggtcactgtt
     2101 ccaagttatt aggctttttg ctagttcctt ttcccccgta atacataaag aaacatgatt
     2161 tcttaagata acataacccc atattttagt taaatttata cctattaagg ttaagttcca
     2221 gctttgtcca ggggaaggga gcagaaagaa gcactcgaca actgtatagg tacacgtcag
     2281 gtcagaagat gttctgttcc atgaggtttg attagttaac atgtgcacca gaccatgttt
     2341 acacaagatg tttgtaagtt cctgggtttt cttctgccta ttaacttcac tgtccataat
     2401 ggacaagatt aaaaaagttt atcatttttt cttggaactt agcatatgaa aaactatttt
     2461 cttaaaattt acaaatattc caataaatcc caactgtact atgaggatgt atttctcagg
     2521 gtaattaaaa aggatacaga acttatttct ttattttcag tatctttgat gttgattaat
     2581 cagaatacat atagagatat atttgatacc cgaaatgtca ttagagagtt atgatgagca
     2641 cacacaatca agcttagggc caaataaaag ataactatcg tatgctttaa gtagagattt
     2701 cactttgctt taaaataaag ttatttttcc ctata
//
