LOCUS       XM_039088826            1099 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NOP2/Sun RNA methyltransferase 3
            (Nsun3), transcript variant X15, mRNA.
ACCESSION   XM_039088826
VERSION     XM_039088826.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1099
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1099
                     /gene="Nsun3"
                     /note="NOP2/Sun RNA methyltransferase 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 10 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:100360437"
                     /db_xref="RGD:2322119"
     CDS             121..966
                     /gene="Nsun3"
                     /codon_start=1
                     /product="tRNA (cytosine(34)-C(5))-methyltransferase,
                     mitochondrial isoform X6"
                     /protein_id="XP_038944754.1"
                     /db_xref="GeneID:100360437"
                     /db_xref="RGD:2322119"
                     /translation="MLTRLKAKSEGKLAKQLCRVVLDQFDKQYSKELGDCWSKVRDVL
                     ISPSLWQYAVLFNRFSYPSELEKTLLLRGYHTVLQDALPHYPKSMKCYLSRTADRMPS
                     ERHQPGRLKTYYLLNAASLLPVLALEVKDGETVLDLCAAPGGKSIALLQCAYPGYLLC
                     NEYDRLRGRWLRQTLESFIPQPLRNVIKVSELDGREVGDAQPATFDKVLVDAPCSNDR
                     SWLFSSDSQKATYRICQRNNLPALQVGLLRFFVTSSPPDTLPFGLTSEKNRLLKDNQT
                     CQNKI"
ORIGIN      
        1 cggaaacagg aaatgtcagg cagccgtggc ctccaagcag gacccggaag tgtggcgttt
       61 ctttgtgttc ttcggcgaac tcttaaggaa taactgtagc ttgcgagctc aggcgggacc
      121 atgctgactc ggctgaaagc aaaatcagag gggaagcttg caaaacagct atgcagagtt
      181 gtgctggatc agtttgacaa acagtattcg aaagaacttg gggattgctg gagtaaagta
      241 agggatgttc tgatatctcc atcgctgtgg caatatgctg tcctcttcaa ccgattcagt
      301 tatccctctg aactggaaaa gaccttgctc ttgcggggct atcacacagt ccttcaggac
      361 gctttgccac attatcccaa gtcaatgaag tgttacctca gccgaactgc agaccgaatg
      421 ccttcagaac gacatcagcc gggacgtttg aagacatact acctgcttaa tgctgcttct
      481 cttcttccag tcctggctct ggaagtgaag gatggggaga cagtcctgga cttgtgtgcc
      541 gctcctggag gcaaatccat agctctgctt cagtgcgctt atccaggtta tcttctctgt
      601 aacgagtatg atcgcctgag aggaagatgg ctgagacaga cgttggaatc tttcatccca
      661 cagcctttga gaaatgtaat taaagtgtct gaattggatg gcagagaagt gggggatgcc
      721 cagcctgcga cgtttgacaa ggtgttagtt gatgctccgt gttcaaatga tcgaagctgg
      781 ctgttctcct cagactctca gaaagctacc tataggattt gtcaaaggaa caatttgcct
      841 gccctccaag taggactctt aaggttcttc gtcacctcct ctcccccgga cacactccca
      901 ttcggtctca cgtcggaaaa gaacaggctt cttaaagaca accagacatg tcaaaataaa
      961 atatgacgag gcaacaaata ccaaaaaatc tgtcatatca gagttggacg tggtaaacca
     1021 tcaagaggaa aagaacccca agagcaggca caagagtcag aaacccactt gttttcacag
     1081 ccaggagtcc cataaaaat
//
