LOCUS       XM_039088819            2230 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NOP2/Sun RNA methyltransferase 3
            (Nsun3), transcript variant X9, mRNA.
ACCESSION   XM_039088819
VERSION     XM_039088819.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2230
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2230
                     /gene="Nsun3"
                     /note="NOP2/Sun RNA methyltransferase 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 2 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:100360437"
                     /db_xref="RGD:2322119"
     CDS             221..1498
                     /gene="Nsun3"
                     /codon_start=1
                     /product="tRNA (cytosine(34)-C(5))-methyltransferase,
                     mitochondrial isoform X2"
                     /protein_id="XP_038944747.1"
                     /db_xref="GeneID:100360437"
                     /db_xref="RGD:2322119"
                     /translation="MNAAVLIPVTAAVQIHHYRSCLKNRRDVLISPSLWQYAVLFNRF
                     SYPSELEKTLLLRGYHTVLQDALPHYPKSMKCYLSRTADRMPSERHQPGRLKTYYLLN
                     AASLLPVLALEVKDGETVLDLCAAPGGKSIALLQCAYPGYLLCNEYDRLRGRWLRQTL
                     ESFIPQPLRNVIKVSELDGREVGDAQPATFDKVLVDAPCSNDRSWLFSSDSQKATYRI
                     CQRNNLPALQVGLLRSAIKALRPGGLLIYSTCTLSKAENQDVISEILTSDSNIVPMDI
                     SGIARTFSQDFTFAPTDQKCSLLVIPEKGKAWGPMYIAKLKKGMSTRKWQGELCSSSP
                     PLPRTHSHSVSRRKRTGFLKTTRHVKIKYDEATNTKKSVISELDVVNHQEEKNPKSRH
                     KSQKPTCFHSQESHKNTKLLSMISMQRTWYRLV"
ORIGIN      
        1 gggaccatgc tgactcggct gaaagcaaaa tcagagggga agcttgcaaa acagctatgc
       61 agagttgtgc tggatcagtt tgacaaacag tattcgaaag aacttgggga ttgctggagt
      121 aaagtaagtg gtctgaggta acccttgtga agcattgcca ggaaaaggca aaagcctcag
      181 aaactggtca tctcagagga aaagccagag gtctgcagaa atgaatgcag ctgttctcat
      241 cccagtcaca gcagcagtcc agattcacca ttacagatcc tgtctgaaaa atcgcaggga
      301 tgttctgata tctccatcgc tgtggcaata tgctgtcctc ttcaaccgat tcagttatcc
      361 ctctgaactg gaaaagacct tgctcttgcg gggctatcac acagtccttc aggacgcttt
      421 gccacattat cccaagtcaa tgaagtgtta cctcagccga actgcagacc gaatgccttc
      481 agaacgacat cagccgggac gtttgaagac atactacctg cttaatgctg cttctcttct
      541 tccagtcctg gctctggaag tgaaggatgg ggagacagtc ctggacttgt gtgccgctcc
      601 tggaggcaaa tccatagctc tgcttcagtg cgcttatcca ggttatcttc tctgtaacga
      661 gtatgatcgc ctgagaggaa gatggctgag acagacgttg gaatctttca tcccacagcc
      721 tttgagaaat gtaattaaag tgtctgaatt ggatggcaga gaagtggggg atgcccagcc
      781 tgcgacgttt gacaaggtgt tagttgatgc tccgtgttca aatgatcgaa gctggctgtt
      841 ctcctcagac tctcagaaag ctacctatag gatttgtcaa aggaacaatt tgcctgccct
      901 ccaagtagga ctcttaaggt ctgcaattaa agccttacgt cctggaggac tactcatata
      961 ttctacatgc acgctttcca aggctgaaaa tcaagatgtg atcagtgaga tcttgacttc
     1021 cgacagtaac atcgtaccca tggatattag tgggatagca aggactttct cccaagactt
     1081 tacatttgct cccactgacc agaaatgcag ccttttggtg attcctgaaa agggcaaagc
     1141 ttggggtcca atgtatatag ccaaactgaa aaaaggcatg agtacaagaa agtggcaggg
     1201 cgaactttgt tcttcgtcac ctcctctccc ccggacacac tcccattcgg tctcacgtcg
     1261 gaaaagaaca ggcttcttaa agacaaccag acatgtcaaa ataaaatatg acgaggcaac
     1321 aaataccaaa aaatctgtca tatcagagtt ggacgtggta aaccatcaag aggaaaagaa
     1381 ccccaagagc aggcacaaga gtcagaaacc cacttgtttt cacagccagg agtcccataa
     1441 aaataccaaa ctattatcta tgataagtat gcagaggacc tggtatagac tcgtgtaggc
     1501 cctgtgctgc ttgtttcagg ctctgtgagc tcaaggggaa agggacctct tgtaatcaac
     1561 tcaaaatata tacaagcact atctaaggac ttcaacctgc tatcaccctt gatgagtgtc
     1621 ttttcctgtt gccctccatc cctctacctt tcgaaatctt tccactattc ttcaggaacc
     1681 ctttagctct gaagggaggg atttgacaga gacttccagt ctagattttt ctcaccataa
     1741 tgtctggctg aaggtctatg caggttcaaa tattttcgaa tacatttgtt ttataatgtt
     1801 aatgctcctg tgtgccaatg atccaagtat caatatttaa ttttcccaca atgagttaaa
     1861 agaatagact gctttcacaa ttgtgttcac tggtctgaga gatgcaaatt caataaaaga
     1921 atctaatcta ttaaggacaa gcttcggcat gtattcagtg tgctaaggtt tcaacgtgaa
     1981 atatgttcag tgataagact ggaatgccag tggataaatc cataatgtct tctggatgat
     2041 ccttcaaacc ttctaggaat atccaaggat attagctgtt tcaaaataga aaagagctat
     2101 tcccagcaat caaggacagt gagaaaaaca ggtcttaaag taccatatga agaggctata
     2161 gaaaagtctt attttttaat aaacaactgt ttataaaaac aactgttaat aaacaaatgt
     2221 tttttttaat
//
