LOCUS       XM_039088815            3397 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NOP2/Sun RNA methyltransferase 3
            (Nsun3), transcript variant X5, mRNA.
ACCESSION   XM_039088815
VERSION     XM_039088815.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3397
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3397
                     /gene="Nsun3"
                     /note="NOP2/Sun RNA methyltransferase 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 long SRA reads, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100360437"
                     /db_xref="RGD:2322119"
     CDS             1388..2665
                     /gene="Nsun3"
                     /codon_start=1
                     /product="tRNA (cytosine(34)-C(5))-methyltransferase,
                     mitochondrial isoform X2"
                     /protein_id="XP_038944743.1"
                     /db_xref="GeneID:100360437"
                     /db_xref="RGD:2322119"
                     /translation="MNAAVLIPVTAAVQIHHYRSCLKNRRDVLISPSLWQYAVLFNRF
                     SYPSELEKTLLLRGYHTVLQDALPHYPKSMKCYLSRTADRMPSERHQPGRLKTYYLLN
                     AASLLPVLALEVKDGETVLDLCAAPGGKSIALLQCAYPGYLLCNEYDRLRGRWLRQTL
                     ESFIPQPLRNVIKVSELDGREVGDAQPATFDKVLVDAPCSNDRSWLFSSDSQKATYRI
                     CQRNNLPALQVGLLRSAIKALRPGGLLIYSTCTLSKAENQDVISEILTSDSNIVPMDI
                     SGIARTFSQDFTFAPTDQKCSLLVIPEKGKAWGPMYIAKLKKGMSTRKWQGELCSSSP
                     PLPRTHSHSVSRRKRTGFLKTTRHVKIKYDEATNTKKSVISELDVVNHQEEKNPKSRH
                     KSQKPTCFHSQESHKNTKLLSMISMQRTWYRLV"
ORIGIN      
        1 cgagaacgga aacaggaaat gtcaggcagc cgtggcctcc aagcaggacc cggaagtgtg
       61 gcgtttcttt gtgttcttcg gcgaactctt aaggaataac tgtagcttgc gagctcaggc
      121 gggaccatgc tgactcgggt gaggacttcg gcggtcgagc gtccaggact gaagccgccg
      181 agagacaggg ctgactggga tggggcccac actgcccaaa gcccggaacc atgctgagtg
      241 tggtcctggt gtttctcctg tccgtccgct ttcactgcag gatctggccc cggggctggc
      301 gctgaaatgc gggtgacatt gttctcggcc ctaggtgcac ccgagtgatg aagggagatc
      361 cagaaagtca gggcgatgct tatttccgta actaatattt ttttacgttg acggcaaggt
      421 tgccgaggtg atatatatct atagtgttac ttaaaacaaa acttttatga cttctgaatt
      481 cttaggatac attcccatct aacctgtgcc ttactcttgg gtaattgcca ctttgagaaa
      541 caccagtttc ataagtaggt agactatgga tgaagtaatt ttgttacaag taaagaattg
      601 cttccatggc aggaactgac attttagaaa acatttcttt aaaagcagga agccccactc
      661 ctgattacct aatggcagta gcttgctgag gccgcaggag ggttagttta tagtatggct
      721 ttagggtatg gctccacgca cccctgtgtg tagtaacagc actaattggt ccagagtgga
      781 ttttttaaaa ggatgtgaag ttggaagggg aacttacagg gagtctgggc ggagttagag
      841 tggtgtggga gcgtggttat caaaatatgt tgtctacatg aatgaaatcc tcaaggaata
      901 aatacagata taaaaaattt aagggcatgt aaatgtcaaa tttcaataaa cgtgtgatat
      961 cacagtgtgt tgtcagcaat ttttttctta tcgtagctga aagcaaaatc agaggggaag
     1021 cttgcaaaac agctatgcag agttgtgctg gatcagtttg acaaacagta ttcgaaagaa
     1081 cttggggatt gctggagtaa agtaaggcca ccttccatgg tctgcctttc tatggaacct
     1141 tcactatgac gtgttacacc tgaaccaaga gtcttagagt gaagaggaag gatcctctgt
     1201 gcctttggta cttgatgttc tgccccctcc ttccgtatgc agttaaagag tcggtacaaa
     1261 tctctcagca ccttgtagca tgtaacctaa ataagtggtc tgaggtaacc cttgtgaagc
     1321 attgccagga aaaggcaaaa gcctcagaaa ctggtcatct cagaggaaaa gccagaggtc
     1381 tgcagaaatg aatgcagctg ttctcatccc agtcacagca gcagtccaga ttcaccatta
     1441 cagatcctgt ctgaaaaatc gcagggatgt tctgatatct ccatcgctgt ggcaatatgc
     1501 tgtcctcttc aaccgattca gttatccctc tgaactggaa aagaccttgc tcttgcgggg
     1561 ctatcacaca gtccttcagg acgctttgcc acattatccc aagtcaatga agtgttacct
     1621 cagccgaact gcagaccgaa tgccttcaga acgacatcag ccgggacgtt tgaagacata
     1681 ctacctgctt aatgctgctt ctcttcttcc agtcctggct ctggaagtga aggatgggga
     1741 gacagtcctg gacttgtgtg ccgctcctgg aggcaaatcc atagctctgc ttcagtgcgc
     1801 ttatccaggt tatcttctct gtaacgagta tgatcgcctg agaggaagat ggctgagaca
     1861 gacgttggaa tctttcatcc cacagccttt gagaaatgta attaaagtgt ctgaattgga
     1921 tggcagagaa gtgggggatg cccagcctgc gacgtttgac aaggtgttag ttgatgctcc
     1981 gtgttcaaat gatcgaagct ggctgttctc ctcagactct cagaaagcta cctataggat
     2041 ttgtcaaagg aacaatttgc ctgccctcca agtaggactc ttaaggtctg caattaaagc
     2101 cttacgtcct ggaggactac tcatatattc tacatgcacg ctttccaagg ctgaaaatca
     2161 agatgtgatc agtgagatct tgacttccga cagtaacatc gtacccatgg atattagtgg
     2221 gatagcaagg actttctccc aagactttac atttgctccc actgaccaga aatgcagcct
     2281 tttggtgatt cctgaaaagg gcaaagcttg gggtccaatg tatatagcca aactgaaaaa
     2341 aggcatgagt acaagaaagt ggcagggcga actttgttct tcgtcacctc ctctcccccg
     2401 gacacactcc cattcggtct cacgtcggaa aagaacaggc ttcttaaaga caaccagaca
     2461 tgtcaaaata aaatatgacg aggcaacaaa taccaaaaaa tctgtcatat cagagttgga
     2521 cgtggtaaac catcaagagg aaaagaaccc caagagcagg cacaagagtc agaaacccac
     2581 ttgttttcac agccaggagt cccataaaaa taccaaacta ttatctatga taagtatgca
     2641 gaggacctgg tatagactcg tgtaggccct gtgctgcttg tttcaggctc tgtgagctca
     2701 aggggaaagg gacctcttgt aatcaactca aaatatatac aagcactatc taaggacttc
     2761 aacctgctat cacccttgat gagtgtcttt tcctgttgcc ctccatccct ctacctttcg
     2821 aaatctttcc actattcttc aggaaccctt tagctctgaa gggagggatt tgacagagac
     2881 ttccagtcta gatttttctc accataatgt ctggctgaag gtctatgcag gttcaaatat
     2941 tttcgaatac atttgtttta taatgttaat gctcctgtgt gccaatgatc caagtatcaa
     3001 tatttaattt tcccacaatg agttaaaaga atagactgct ttcacaattg tgttcactgg
     3061 tctgagagat gcaaattcaa taaaagaatc taatctatta aggacaagct tcggcatgta
     3121 ttcagtgtgc taaggtttca acgtgaaata tgttcagtga taagactgga atgccagtgg
     3181 ataaatccat aatgtcttct ggatgatcct tcaaaccttc taggaatatc caaggatatt
     3241 agctgtttca aaatagaaaa gagctattcc cagcaatcaa ggacagtgag aaaaacaggt
     3301 cttaaagtac catatgaaga ggctatagaa aagtcttatt ttttaataaa caactgttta
     3361 taaaaacaac tgttaataaa caaatgtttt ttttaat
//
