LOCUS       XM_039088813            4094 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NOP2/Sun RNA methyltransferase 3
            (Nsun3), transcript variant X3, mRNA.
ACCESSION   XM_039088813
VERSION     XM_039088813.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4094
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4094
                     /gene="Nsun3"
                     /note="NOP2/Sun RNA methyltransferase 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 4 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:100360437"
                     /db_xref="RGD:2322119"
     CDS             2085..3362
                     /gene="Nsun3"
                     /codon_start=1
                     /product="tRNA (cytosine(34)-C(5))-methyltransferase,
                     mitochondrial isoform X2"
                     /protein_id="XP_038944741.1"
                     /db_xref="GeneID:100360437"
                     /db_xref="RGD:2322119"
                     /translation="MNAAVLIPVTAAVQIHHYRSCLKNRRDVLISPSLWQYAVLFNRF
                     SYPSELEKTLLLRGYHTVLQDALPHYPKSMKCYLSRTADRMPSERHQPGRLKTYYLLN
                     AASLLPVLALEVKDGETVLDLCAAPGGKSIALLQCAYPGYLLCNEYDRLRGRWLRQTL
                     ESFIPQPLRNVIKVSELDGREVGDAQPATFDKVLVDAPCSNDRSWLFSSDSQKATYRI
                     CQRNNLPALQVGLLRSAIKALRPGGLLIYSTCTLSKAENQDVISEILTSDSNIVPMDI
                     SGIARTFSQDFTFAPTDQKCSLLVIPEKGKAWGPMYIAKLKKGMSTRKWQGELCSSSP
                     PLPRTHSHSVSRRKRTGFLKTTRHVKIKYDEATNTKKSVISELDVVNHQEEKNPKSRH
                     KSQKPTCFHSQESHKNTKLLSMISMQRTWYRLV"
ORIGIN      
        1 atttaggggg gttggggatt tagctcagtg gtagagcgct tgcctagcaa gcggaaggcc
       61 ctgggttcag tcctcagatc tggggaggaa aaaaaaaaga tatttaggaa ataaaatgaa
      121 atggcaacta ttatttcagc aatgctacgt tttctatcga accgtgaata gtgacatata
      181 taatgaattc atgaggattt taatatgcaa aggtattcat tcatatgaaa tatctaaaga
      241 accacacact ttccattttt aggtttttac gttcaaatga tacctactta agtactgtgt
      301 ttctggtttt tcttctgggg ctgtagcata gagttaaagt aatctgccta aatttattta
      361 gctggttagt aagtagagtt ggaagttctg cccactctga gtcccgatct ccactgctga
      421 cggtactatg cctcatacct ggcatgtaat taagcatact tgggtgattt aaaacaaaag
      481 atttacaaga agtatttttg tctggtcttt tcagtcactt ggctattcat aacctgtgat
      541 gagttgattt ttctacttca tatacccaga aaggtttata aattactata tgaccctgaa
      601 caaaatgacc agtgaacctt aaagccatgt aattagctgt gccttctgct ctaccttttt
      661 ggtaggattt catggtaatg tttgcataag catgtactaa atttgccata ggcaaaataa
      721 aactttctca gaaacacaaa ccatggaagg tagcctaggg gaaataggaa cagaattaca
      781 tgtttgtttt atagctattt gcaaacctaa tgttatactt catttaagta cttttactat
      841 cagcattctt ctcctccccc tcatctagaa ggaattcaca tttctcagat ttttgcagca
      901 gtgggcaagg cttggtttca cggtttccgt aattgagcat ttgctgtact tgcttccagc
      961 gtggtccctt cagggaagag tgtagcaaac cttggcgttt gcagccatgt gatatcatgt
     1021 tacactatgc agttcttttc ggactgagtg cattgcttct gtttttgagc agttactctt
     1081 agttctcctg ttcaggattc tctagtgcat gttattactg tctggtaaac ccatgctgct
     1141 ttcaggattt acttgggttc tctcctatgg cggcatcact gtgagtctcg tttcttcgct
     1201 ccattatctc tttagtatct ttgtaataaa gaaacttcat tgggaagtag gtctggggtt
     1261 ttctcttacc tcttcagagg tgatctcgga gtccttgaaa atgtactgat aatgataaga
     1321 gtcagacgtt tacctgggga tttgtgccac acctgctagt ctaacaaggg agatgtcgac
     1381 cacaaataag ggaataacct gcagaagggt tggcatctaa gtaaaggtga ctggtctgga
     1441 tggacagtca gttaagtctc tgtgacagaa tctccaaaaa gagctgggta cttaggtttt
     1501 gtgagcatcc ttggttggca ttattacctc accctgctgt tacagcgctg tgttccctcc
     1561 cttcatggca ttgtgtctag gagattcttc attttaaaac caacaccacc cctctgagca
     1621 gccctgtgag gtacagtcgt ttccactcac agatagtcag atggagacac agaagtcaaa
     1681 taactcgtga atgggtacat atcgtatatc tggagaggga aagcttgtat gttattctta
     1741 gtcattctgt tatgctgctt ctcagtgctg tcgtgcttta ctgtgttatc ctgtccaccc
     1801 taggccacct tccatggtct gcctttctat ggaaccttca ctatgacgtg ttacacctga
     1861 accaagagtc ttagagtgaa gaggaaggat cctctgtgcc tttggtactt gatgttctgc
     1921 cccctccttc cgtatgcagt taaagagtcg gtacaaatct ctcagcacct tgtagcatgt
     1981 aacctaaata agtggtctga ggtaaccctt gtgaagcatt gccaggaaaa ggcaaaagcc
     2041 tcagaaactg gtcatctcag aggaaaagcc agaggtctgc agaaatgaat gcagctgttc
     2101 tcatcccagt cacagcagca gtccagattc accattacag atcctgtctg aaaaatcgca
     2161 gggatgttct gatatctcca tcgctgtggc aatatgctgt cctcttcaac cgattcagtt
     2221 atccctctga actggaaaag accttgctct tgcggggcta tcacacagtc cttcaggacg
     2281 ctttgccaca ttatcccaag tcaatgaagt gttacctcag ccgaactgca gaccgaatgc
     2341 cttcagaacg acatcagccg ggacgtttga agacatacta cctgcttaat gctgcttctc
     2401 ttcttccagt cctggctctg gaagtgaagg atggggagac agtcctggac ttgtgtgccg
     2461 ctcctggagg caaatccata gctctgcttc agtgcgctta tccaggttat cttctctgta
     2521 acgagtatga tcgcctgaga ggaagatggc tgagacagac gttggaatct ttcatcccac
     2581 agcctttgag aaatgtaatt aaagtgtctg aattggatgg cagagaagtg ggggatgccc
     2641 agcctgcgac gtttgacaag gtgttagttg atgctccgtg ttcaaatgat cgaagctggc
     2701 tgttctcctc agactctcag aaagctacct ataggatttg tcaaaggaac aatttgcctg
     2761 ccctccaagt aggactctta aggtctgcaa ttaaagcctt acgtcctgga ggactactca
     2821 tatattctac atgcacgctt tccaaggctg aaaatcaaga tgtgatcagt gagatcttga
     2881 cttccgacag taacatcgta cccatggata ttagtgggat agcaaggact ttctcccaag
     2941 actttacatt tgctcccact gaccagaaat gcagcctttt ggtgattcct gaaaagggca
     3001 aagcttgggg tccaatgtat atagccaaac tgaaaaaagg catgagtaca agaaagtggc
     3061 agggcgaact ttgttcttcg tcacctcctc tcccccggac acactcccat tcggtctcac
     3121 gtcggaaaag aacaggcttc ttaaagacaa ccagacatgt caaaataaaa tatgacgagg
     3181 caacaaatac caaaaaatct gtcatatcag agttggacgt ggtaaaccat caagaggaaa
     3241 agaaccccaa gagcaggcac aagagtcaga aacccacttg ttttcacagc caggagtccc
     3301 ataaaaatac caaactatta tctatgataa gtatgcagag gacctggtat agactcgtgt
     3361 aggccctgtg ctgcttgttt caggctctgt gagctcaagg ggaaagggac ctcttgtaat
     3421 caactcaaaa tatatacaag cactatctaa ggacttcaac ctgctatcac ccttgatgag
     3481 tgtcttttcc tgttgccctc catccctcta cctttcgaaa tctttccact attcttcagg
     3541 aaccctttag ctctgaaggg agggatttga cagagacttc cagtctagat ttttctcacc
     3601 ataatgtctg gctgaaggtc tatgcaggtt caaatatttt cgaatacatt tgttttataa
     3661 tgttaatgct cctgtgtgcc aatgatccaa gtatcaatat ttaattttcc cacaatgagt
     3721 taaaagaata gactgctttc acaattgtgt tcactggtct gagagatgca aattcaataa
     3781 aagaatctaa tctattaagg acaagcttcg gcatgtattc agtgtgctaa ggtttcaacg
     3841 tgaaatatgt tcagtgataa gactggaatg ccagtggata aatccataat gtcttctgga
     3901 tgatccttca aaccttctag gaatatccaa ggatattagc tgtttcaaaa tagaaaagag
     3961 ctattcccag caatcaagga cagtgagaaa aacaggtctt aaagtaccat atgaagaggc
     4021 tatagaaaag tcttattttt taataaacaa ctgtttataa aaacaactgt taataaacaa
     4081 atgttttttt taat
//
