LOCUS       XM_039088811            2175 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus NOP2/Sun RNA methyltransferase 3
            (Nsun3), transcript variant X1, mRNA.
ACCESSION   XM_039088811
VERSION     XM_039088811.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2175
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2175
                     /gene="Nsun3"
                     /note="NOP2/Sun RNA methyltransferase 3; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 4 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:100360437"
                     /db_xref="RGD:2322119"
     CDS             121..1443
                     /gene="Nsun3"
                     /codon_start=1
                     /product="tRNA (cytosine(34)-C(5))-methyltransferase,
                     mitochondrial isoform X1"
                     /protein_id="XP_038944739.1"
                     /db_xref="GeneID:100360437"
                     /db_xref="RGD:2322119"
                     /translation="MLTRLKAKSEGKLAKQLCRVVLDQFDKQYSKELGDCWSKVRDVL
                     ISPSLWQYAVLFNRFSYPSELEKTLLLRGYHTVLQDALPHYPKSMKCYLSRTADRMPS
                     ERHQPGRLKTYYLLNAASLLPVLALEVKDGETVLDLCAAPGGKSIALLQCAYPGYLLC
                     NEYDRLRGRWLRQTLESFIPQPLRNVIKVSELDGREVGDAQPATFDKVLVDAPCSNDR
                     SWLFSSDSQKATYRICQRNNLPALQVGLLRSAIKALRPGGLLIYSTCTLSKAENQDVI
                     SEILTSDSNIVPMDISGIARTFSQDFTFAPTDQKCSLLVIPEKGKAWGPMYIAKLKKG
                     MSTRKWQGELCSSSPPLPRTHSHSVSRRKRTGFLKTTRHVKIKYDEATNTKKSVISEL
                     DVVNHQEEKNPKSRHKSQKPTCFHSQESHKNTKLLSMISMQRTWYRLV"
ORIGIN      
        1 cggaaacagg aaatgtcagg cagccgtggc ctccaagcag gacccggaag tgtggcgttt
       61 ctttgtgttc ttcggcgaac tcttaaggaa taactgtagc ttgcgagctc aggcgggacc
      121 atgctgactc ggctgaaagc aaaatcagag gggaagcttg caaaacagct atgcagagtt
      181 gtgctggatc agtttgacaa acagtattcg aaagaacttg gggattgctg gagtaaagta
      241 agggatgttc tgatatctcc atcgctgtgg caatatgctg tcctcttcaa ccgattcagt
      301 tatccctctg aactggaaaa gaccttgctc ttgcggggct atcacacagt ccttcaggac
      361 gctttgccac attatcccaa gtcaatgaag tgttacctca gccgaactgc agaccgaatg
      421 ccttcagaac gacatcagcc gggacgtttg aagacatact acctgcttaa tgctgcttct
      481 cttcttccag tcctggctct ggaagtgaag gatggggaga cagtcctgga cttgtgtgcc
      541 gctcctggag gcaaatccat agctctgctt cagtgcgctt atccaggtta tcttctctgt
      601 aacgagtatg atcgcctgag aggaagatgg ctgagacaga cgttggaatc tttcatccca
      661 cagcctttga gaaatgtaat taaagtgtct gaattggatg gcagagaagt gggggatgcc
      721 cagcctgcga cgtttgacaa ggtgttagtt gatgctccgt gttcaaatga tcgaagctgg
      781 ctgttctcct cagactctca gaaagctacc tataggattt gtcaaaggaa caatttgcct
      841 gccctccaag taggactctt aaggtctgca attaaagcct tacgtcctgg aggactactc
      901 atatattcta catgcacgct ttccaaggct gaaaatcaag atgtgatcag tgagatcttg
      961 acttccgaca gtaacatcgt acccatggat attagtggga tagcaaggac tttctcccaa
     1021 gactttacat ttgctcccac tgaccagaaa tgcagccttt tggtgattcc tgaaaagggc
     1081 aaagcttggg gtccaatgta tatagccaaa ctgaaaaaag gcatgagtac aagaaagtgg
     1141 cagggcgaac tttgttcttc gtcacctcct ctcccccgga cacactccca ttcggtctca
     1201 cgtcggaaaa gaacaggctt cttaaagaca accagacatg tcaaaataaa atatgacgag
     1261 gcaacaaata ccaaaaaatc tgtcatatca gagttggacg tggtaaacca tcaagaggaa
     1321 aagaacccca agagcaggca caagagtcag aaacccactt gttttcacag ccaggagtcc
     1381 cataaaaata ccaaactatt atctatgata agtatgcaga ggacctggta tagactcgtg
     1441 taggccctgt gctgcttgtt tcaggctctg tgagctcaag gggaaaggga cctcttgtaa
     1501 tcaactcaaa atatatacaa gcactatcta aggacttcaa cctgctatca cccttgatga
     1561 gtgtcttttc ctgttgccct ccatccctct acctttcgaa atctttccac tattcttcag
     1621 gaacccttta gctctgaagg gagggatttg acagagactt ccagtctaga tttttctcac
     1681 cataatgtct ggctgaaggt ctatgcaggt tcaaatattt tcgaatacat ttgttttata
     1741 atgttaatgc tcctgtgtgc caatgatcca agtatcaata tttaattttc ccacaatgag
     1801 ttaaaagaat agactgcttt cacaattgtg ttcactggtc tgagagatgc aaattcaata
     1861 aaagaatcta atctattaag gacaagcttc ggcatgtatt cagtgtgcta aggtttcaac
     1921 gtgaaatatg ttcagtgata agactggaat gccagtggat aaatccataa tgtcttctgg
     1981 atgatccttc aaaccttcta ggaatatcca aggatattag ctgtttcaaa atagaaaaga
     2041 gctattccca gcaatcaagg acagtgagaa aaacaggtct taaagtacca tatgaagagg
     2101 ctatagaaaa gtcttatttt ttaataaaca actgtttata aaaacaactg ttaataaaca
     2161 aatgtttttt ttaat
//
