LOCUS       XM_039111639            6912 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus neurexin 3 (Nrxn3), transcript variant
            X16, mRNA.
ACCESSION   XM_039111639
VERSION     XM_039111639.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6912
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6912
                     /gene="Nrxn3"
                     /note="neurexin 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 22 ESTs, 9 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 11 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:116508"
                     /db_xref="RGD:620212"
     CDS             1..4788
                     /gene="Nrxn3"
                     /codon_start=1
                     /product="neurexin-3 isoform X15"
                     /protein_id="XP_038967567.1"
                     /db_xref="GeneID:116508"
                     /db_xref="RGD:620212"
                     /translation="MSFTLHSVFFTLKVSIFLGSLVGLCLGLEFMGLPNQWARYLRWD
                     ASTRSDLSFQFKTNVSTGLLLYLDDGGVCDFLCLSLVDGRVQLRFSMDCAETTVLSNK
                     QVNDSSWHFLMVSRDRVRTGLVIDGEGQSGELRPQRPYMDVVSDLFLGGVPADIRPSA
                     LTLDGVQNMPGFKGLMLDLKYGNSEPRLLGSQSVQLEAEGPCGERPCENGGICFLLDG
                     HPTCDCSTTGYGGTLCSEDVSQGPGLSHLMMSEQGRSKAREENVATFRGSEYLCYDLS
                     QNPIQSSSDEITLSFKTWQRNGLILHTGKSADYVNLALKDGAVSLVINLGSGAFEAIV
                     EPVNGKFNDNAWHDVKVTRNLRQHSGIGHAMVTISVDGILTTTGYTQEDYTMLGSDDF
                     FYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDIRLELSRLARIGDTKMKIYGEVVF
                     KCENVATLDPINFETPEAYISLPKWNTKRMGSISFDFRTTEPNGLILFTHGKPQERKD
                     VRSQKNTKVDFFAVELLDGNLYLLLDMGSGTIKVKATQKKANDGEWYHVDIQRDGRSG
                     TISVNSRRTPFTASGESEILDLEGDMYLGGLPENRAGLILPTELWTAMLNYGYVGCIR
                     DLFIDGRSKNIRQLAEMQNAAGVKSSCSRMSAKQCDSYPCKNNAVCKDGWNRFICDCT
                     GTGYWGRTCEREASILSYDGSMYMKVIMPMVMHTEAEDVSFRFMSQRAYGLLVATTSR
                     DSADTLRLELDGGRVKLMVNLDCIRINCNSSKGPETLYAGQKLNDNEWHTVRVVRRGK
                     SLKLTVDDDVAEGTMVGDHTRLEFHNIETGIMTEKRYISVVPSSFIGHLQSLMFNGLL
                     YIDLCKNGDIDYCELKARFGLRNIIADPVTFKTKSSYLTLATLQAYTSMHLFFQFKTT
                     SADGFILFNSGDGNDFIAVELVKGYIHYVFDLGNGPNVIKGNSDRPLNDNQWHNVVIT
                     RDNSNTHSLKVDTKVVTQVINGAKNLDLKGDLYMAGLAQGMYSNLPKLVASRDGFQGC
                     LASVDLNGRLPDLINDALHRSGQIDRGCEVALTKADLQGPSTTCQEDSCANQGVCMQQ
                     WEGFTCDCSMTSYSGNQCNDPGATYIFGKSGGLILYTWPANDRPSTRSDRLAVGFSTT
                     VKDGILVRIDSAPGLGDFLQLHIEQGKIGVVFNIGTVDISIKEERTPVNDGKYHVVRF
                     TRNGGNATLQVDNWPVNEHYPTGNTDNERLQMVKQKIPFKYNRPVEEWLQEKGRQLTI
                     FNTQAQIAIGGKDKGRLFQGQLSGLYYDGLKVLNMAAENNPNIKINGSVRLVGEVPSV
                     SGTTQTTSMPPEMSTTVMETTTTMATTTTRKNRSTASIQPTSDDLVSSAECSSDDEDF
                     VECEPSTGRSDKSLSTSIFEGGYKAHAPKWESKDFRPNKVSETSRTTTTSLSPELIRF
                     TASSSSGMVPKLPAGKMNNRDLKPQPDIVLLPLPTAYELDSTKLKSPLITSPMFRNVP
                     TANPTEPGIRRVPGASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSY
                     QVDETRNYISNSAQSNGTLMKEKQASSKSGHKKQKNKDKEYYV"
ORIGIN      
        1 atgagcttta ccctccactc agttttcttc accctgaagg tgagcatctt tctgggctcc
       61 ctggtggggc tctgcctggg tctggagttc atgggcctcc ctaaccagtg ggcccgctat
      121 ctacgctggg atgctagcac gcgcagtgac ctgagcttcc agttcaagac caatgtttcc
      181 actgggctgc tcctgtattt ggatgatggt ggtgtctgtg acttcctctg cctctccctg
      241 gtggatggcc gtgttcagct ccgctttagc atggactgcg ccgagaccac tgtgttgtcc
      301 aacaagcagg tgaacgacag cagttggcac ttcctcatgg tgagccgtga ccgtgtgcgc
      361 actgggctgg tgattgatgg tgagggccag tctggtgagc tacggcccca gcggccctac
      421 atggatgtgg tcagtgattt gttcctcggt ggcgtccccg ctgacattcg accttctgcc
      481 ctgacccttg atggagtaca gaacatgcct ggctttaagg gattaatgct ggatctcaag
      541 tatggcaact cggaacctcg gcttctcggg agccagagtg tccagttaga agcagaggga
      601 ccctgtggcg agcgtccctg tgaaaatggt gggatctgct tcctcttgga tggtcatccc
      661 acctgtgact gttctaccac tggctatggc ggcacactct gctcagaaga tgtcagtcaa
      721 ggtccaggcc tctcccatct tatgatgagt gaacaaggta gaagtaaagc tcgagaggag
      781 aacgtggcca ccttccgagg ctcagagtat ctgtgctatg acctgtccca gaaccccatc
      841 cagagcagca gcgatgaaat caccctttcc tttaagacct ggcaacgcaa tgggctcatc
      901 ctccacacgg gcaagtcggc cgactatgtt aacctggctc tgaaggatgg tgcggtctcc
      961 ttggtcatta acctggggtc cggggccttt gaggccattg tggagccagt gaatgggaaa
     1021 ttcaacgaca acgcctggca tgatgtcaaa gtgacacgca atcttcggca gcactcaggc
     1081 atcggacacg ctatggtgac aatctctgtg gatggcatcc taacaacaac aggctacact
     1141 caagaggact acaccatgct gggctcagat gacttcttct atgttggtgg aagcccaagc
     1201 actgcggact tgccaggctc acctgtgagc aacaacttca tgggctgcct taaagaggtt
     1261 gtttataaga ataatgacat ccgtctggag ctgtctcgct tggcccggat tggggacacc
     1321 aagatgaaaa tctatggtga agttgtgttc aagtgtgaga acgtggccac tctggacccc
     1381 atcaactttg agaccccaga ggcttacatc agcttgccca agtggaacac caaacgtatg
     1441 ggttccatct cctttgactt tcgcaccact gagcccaacg gtctgatcct cttcactcac
     1501 gggaaacccc aagaaaggaa agacgtccgg agccagaaga acacaaaagt tgacttcttt
     1561 gctgtggaac ttcttgatgg caacctgtat ttgctgcttg acatgggctc tggcaccatc
     1621 aaagtgaagg ccactcagaa gaaagccaat gatggggaat ggtaccacgt ggacattcag
     1681 cgggatggca gatcaggtac catatctgtg aacagcaggc gcacaccgtt caccgccagt
     1741 ggggaaagtg aaatcttgga cctggagggg gacatgtatc tgggcggact gccagagaac
     1801 cgggctggcc tcattctccc cacggagctc tggactgcca tgctcaacta cggttatgtg
     1861 ggctgcatcc gcgacctgtt catcgatggg cgcagcaaaa acatccggca gctggcggag
     1921 atgcagaatg cagcaggcgt caagtcctcc tgttcacgca tgagcgccaa gcagtgtgac
     1981 agctacccct gcaagaacaa tgcggtgtgc aaggacggct ggaaccgctt catctgcgac
     2041 tgcactggca ccggctactg gggtagaacc tgtgaaagag aggcatccat cctgagctat
     2101 gacggcagca tgtatatgaa ggtcatcatg cccatggtga tgcacacaga ggcagaggat
     2161 gtttccttcc ggttcatgtc ccagcgagcc tatgggctac tggtagcgac tacctccagg
     2221 gattctgcag atacactgcg tctagagttg gatggtgggc gtgtcaagct catggttaac
     2281 ttagactgta tcaggataaa ctgtaactcc agcaaaggac ctgagaccct gtacgcaggg
     2341 cagaagctca atgacaatga gtggcatacc gtccgggtag tgcgaagagg aaaaagcctt
     2401 aaactaacag tggacgatga tgtggctgag ggtacgatgg tgggcgacca cacccgcctg
     2461 gagttccaca atattgagac tggtatcatg acggagaagc gttacatctc cgtggtcccc
     2521 tccagtttca tcggccatct acagagcctc atgttcaatg gcttgctgta catcgatttg
     2581 tgcaaaaatg gtgacatcga ctactgcgaa ctgaaggctc gttttggact gagaaacatc
     2641 atcgctgacc ctgtcacttt taagaccaag agcagctacc tgacccttgc caccctccag
     2701 gcttacactt ccatgcatct ctttttccag ttcaagacca cttcagctga tggcttcatt
     2761 ctcttcaaca gtggtgatgg caatgatttt attgcagttg aattggtcaa ggggtacata
     2821 cactatgtgt ttgatcttgg caatggtccc aatgtgatca aaggcaacag tgaccgtcct
     2881 ctgaatgaca accagtggca caacgttgtc atcactcggg acaacagtaa tacccacagc
     2941 ctgaaagtgg acaccaaggt agtcactcag gtcatcaatg gtgccaagaa tctggatttg
     3001 aaaggtgacc tctatatggc tggcttagcc cagggcatgt atagcaacct tccaaagctc
     3061 gtggcctctc gggatggatt tcagggttgc ctggcctctg tggacttgaa tgggcgcctg
     3121 cctgatctca tcaacgatgc tctccacagg agtggacaga ttgatcgagg ctgtgaagtt
     3181 gcgttgacca aagctgacct gcaaggaccc agtacaacct gtcaggagga ttcatgtgcc
     3241 aaccaggggg tttgcatgca gcagtgggaa ggttttacat gtgactgctc catgacatca
     3301 tattctggaa accagtgcaa tgaccctggt gccacatata tctttgggaa aagcggtggt
     3361 ctcatcctct acacctggcc agcaaatgac agacccagca cacgctctga ccgcctcgcc
     3421 gtgggattca gcaccactgt gaaggatggt atcttagtac gcatcgacag tgcccctgga
     3481 cttggcgact ttctccagct tcacatagaa caagggaaaa ttggagttgt cttcaatatt
     3541 ggcacagttg acatctccat caaagaagag agaacccctg tcaacgatgg caaataccat
     3601 gtggtgcgct tcaccagaaa tgggggcaat gcaacccttc aggtggacaa ctggccagtg
     3661 aatgagcatt atcctacagg caacactgat aatgaacgcc tccaaatggt aaaacagaaa
     3721 atccccttca aatataatcg gcctgtagag gagtggctgc aggaaaaagg ccggcagcta
     3781 accatcttca acacccaggc gcaaatagcc atcggaggaa aggacaaagg acgtctcttc
     3841 caaggccaac tctctgggct ctattatgat ggtttgaaag tactgaacat ggcggctgag
     3901 aacaacccta atattaaaat caatggaagt gtccggctag tgggagaagt cccatcagtc
     3961 tcgggaacaa cacaaacaac ctccatgcca cctgaaatgt ctaccactgt catggaaacc
     4021 accaccacga tggctacgac caccacccgc aaaaaccgct ctacagccag cattcagcca
     4081 acatcagatg accttgtttc atctgctgaa tgctcaagtg atgatgaaga ctttgtcgag
     4141 tgtgaaccaa gtacaggtag gtcagataag agtctttcca cttcaatctt cgaaggtggc
     4201 tacaaagcgc atgcgcccaa gtgggaatcc aaggacttta gacctaacaa agtctcggaa
     4261 actagtagaa ctacaaccac ctctttgtcc cctgagctga tccgcttcac agcgtcctcc
     4321 tcgtctggga tggtgcccaa attgccagct ggcaaaatga ataaccgtga tctcaaaccc
     4381 cagcctgata tagtcttgct tccgttgccc actgcctatg agctagacag caccaaactg
     4441 aagagcccac taattacttc ccccatgttc cgtaatgtgc ccacagcaaa ccccacggag
     4501 ccaggaatca gacgggttcc gggggcctca gaggtgatcc gggagtccag cagtacaaca
     4561 gggatggtcg tcggcattgt ggctgctgcc gccctctgca tcttgatcct cctgtacgcc
     4621 atgtacaagt acaggaacag ggacgagggg tcctatcaag tggacgagac gaggaactac
     4681 atcagcaact cggcccagag caacggcacg ctcatgaagg agaaacaagc cagctccaag
     4741 agcggccata agaaacagaa aaacaaggac aaggagtatt atgtgtaaac atcacaccac
     4801 cagtcgtatg cgaattgaaa acagaattat ttctatacac acacctgaat actttgacaa
     4861 tgagatttaa cttgttggat atgttcggtg agttggggta taccacgact atggtgggaa
     4921 aaaccatttt taaaaggaca catacgatgg tgtatctctc tgtaatggtg agccatggtg
     4981 caaggtcata gcctttgcct gaagacagaa aattctctct gccctgctgt atcataaagc
     5041 acacacttag tgccctggag caagtccatg actccacttg actttggaag cttccttctc
     5101 tccgggacct tttgaaaggg gtagaagact atgtgactta cttgttcctt cgatccaagt
     5161 gagtctgtaa tgatgtttgt gactctcgac tgtaacaatg ttggcttatt ttttgtttgt
     5221 ttgtttaatt atgtaaaaaa acaaaaacaa aaaaatgaga aaagaaaaat gctttaaaaa
     5281 aatacaaaca aaacaataca aaaaaaaaaa aaaacccaga aataccctta tctggttctg
     5341 accagtgtgc gtgtaacttt ccaagacctg aggggaaaat aacttttggg ttttcattta
     5401 ttttttgaca atgactgcac gtaagaagag aaggaaaaag aattactcag aaaaaaagta
     5461 tgagactctt gccatatgaa ctcaaactca accatggcat tcactccacg tagcaggttg
     5521 tggtgtctct agaatcaatc gttagtttcc taatgctttg gtgaacccat gtggtgaatg
     5581 ataatccgtt tgcaaagcag gtccccaaga tctaattcca atatttgcca ttcaaaccta
     5641 cgacagatgg gttttggggc tggtgtcttg gtttcactta acaaatactg tccctgtcca
     5701 tcaacccaaa ctgtgtgaac agggcaaaca taagcctcac aaattaaagc agagcctttc
     5761 caagggaagg aaagaaggga aagggggtgg actgggtctg tgaaatgcat gtaaacaaag
     5821 aaaaaaaaac acaaaacaaa aacgaaaaga caatgctagc atctgtttca acagactgac
     5881 tgcaggggag ttcccaactc gtaatgcaac cacaaatggt cacacaagcc gcgtcatggc
     5941 cgagtgtgaa agtcatagtt attcccctcc cctcgacatg ataacggttt ccatgtggtt
     6001 taactttgta gcctgatgtg agtaaatcct ttccatctcc tcatgtctcc cttcgcccaa
     6061 tcttttttta aaagacaaat aaataaatga ataaagctgc tgtgacacac acacaaaaag
     6121 gaatttaata gtataatata tataaataaa tatatataca gatatattta tcatggtatg
     6181 tttggtggga tgactgacac agaaacctgt taaagtcttg aagtggaatg agaatgttat
     6241 tttaaaagaa aaaaataaca aaacaacaaa aaagtaaacc ttaaaatgtg aagaaagtgt
     6301 gagtttcttt ttcgttttgt cacagttaac tgtgtcaaag agaatttaaa caacagacaa
     6361 cagaaacttc tcagattttg tttacatatt ttactacatt tttgctggta taacccctca
     6421 gtcgtgtatg tacataccgc tttaagaact gttatttcct ttctgtctgt ttattcggtt
     6481 tgtgttccat tctctttctg tcttcttttt gtaaagagga agcaatgtac agagtaaaaa
     6541 aaaataataa taaacaaact ggtttcgttg ccatagccat tcaaaaagca agaagataaa
     6601 acaggacaca tgctcgcaca gaggcgaggt gtgtcatctg gaggggcagg cgtatgcgat
     6661 ttctcttgta cagatgaaaa ccaatcagct gtttagattt agaaatctac tcttgctggt
     6721 ctttgtaagt tgcatgaata tttgactttg aaaaacaatt atcctaaaga catggggcag
     6781 aaggcgcagt ttaaacaatg gcaagccttc actgatgtgt atggaaagtg gtgttcctcc
     6841 ttatccgaga tctcaatgtg ttaagagttt cccttttttt tttttttggt tgttgtcatt
     6901 aaaaagacag ga
//
