LOCUS       XM_039112828            5830 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus neurexin 1 (Nrxn1), transcript variant
            X13, mRNA.
ACCESSION   XM_039112828
VERSION     XM_039112828.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039112828.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5830
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5830
                     /gene="Nrxn1"
                     /gene_synonym="Nrxn1b"
                     /note="neurexin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 21 ESTs, 10 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 47 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:60391"
                     /db_xref="RGD:628659"
     CDS             1328..5830
                     /gene="Nrxn1"
                     /gene_synonym="Nrxn1b"
                     /codon_start=1
                     /product="neurexin-1 isoform X13"
                     /protein_id="XP_038968756.1"
                     /db_xref="GeneID:60391"
                     /db_xref="RGD:628659"
                     /translation="MGTALVQHGGCCLLCLSLLLLGCWAELGSGLEFPGAEGQWTRFP
                     KWNACCESEMSFQLKTRSARGLVLYFDDEGFCDFLELILTRGGRLQLSFSIFCAEPAT
                     LLADTPVNDGAWHSVRIRRQFRNTTLYIDRAEAKWVEVKSKRRDMTVFSGLFVGGLPP
                     ELRAAALKLTLASVREREPFKGWIRDVRVNSSQALPVDGSEVKLDEEPPNSGGGSPCE
                     AGDEGDGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQEDNNVEGLAHLMMGDQGKE
                     EYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSADYVNLALKNG
                     AVSLVINLGSGAFEALVEPVNGKFNDNAWHDVKVTRNLRQHSGIGHAMVTISVDGILT
                     TTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLKEVVYKNNDVRLELSR
                     LAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKWNAKKTGSISFDFRTTE
                     PNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIKIKALQKKV
                     NDGEWYHVDFQRDGRSGTISVNTLRTPYTAPGESEILDLDDELYLGGLPENKAGLVFP
                     TEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEIQSTAGVKPSCSRETAKPCLSNPCK
                     NNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSL
                     RFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLDCIRINCNSSKGPETLFAGY
                     NLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSS
                     VPSNFIGHLQSLTFNGMAYIDLCKNGDIDYCELNARFGFRNIIADPVTFKTKSSYVAL
                     ATLQAYTSMHLFFQFKTTSLDGLILYNSGDGNDFIVVELVKGYLHYVFDLGNGANLIK
                     GSSNKPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGVAKE
                     TYKSLPKLVHAKEGFQGCLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQEDSC
                     SNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRPSTRAD
                     RLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIIN
                     DGKYHVVRFTRSGGNATLQVDSWPVIERYPAGNNDNERLAIARQRIPYRLGRVVDEWL
                     LDKGRQLTIFNSQATIIIGGKEQGQPFQGQLSGLYYNGLKVLNMAAENDANIAIVGNV
                     RLVGEVPSSMTTESTATAMQSEMSTSIMETTTTLATSTARRGKPPTKEPISQTTDDIL
                     VASAECPSDDEDIDPCEPSSANPTRVGGREPYPGSAEVIRESSSTTGMVVGIVAAAAL
                     CILILLYAMYKYRNRDEGSYHVDESRNYISNSAQSNGAVVKEKQPSSAKSANKNKKNK
                     DKEYYV"
ORIGIN      
        1 cgagtgacta gttagaagtg cttgtggcaa gtctccgccc aagattcccc ccgcaagggg
       61 aagatgccaa ggtagaggca ccttgcttct cagcatctga acttggaagg ggctgcagct
      121 gccagctgag gccacccttt ccttagccag aggaccggcc agccgctctc catggtactg
      181 cggagagctc agctccgccc ttctctttca gaaggacagc acccggcgtc acgtaaccca
      241 gccttctcgg gcttcaccac cgcctcttcc ttcccctttt ccctctcctc ctcctgctcc
      301 ccctgctgct cccctccttt ccatgttctt cccttccgca ctcttggaga tagacgctca
      361 agcctgacgc ctcggaaaaa ggcagcagca gtcgccttat ccttagacct caagaaattc
      421 gctttgacca tacatgtttc tgggtctggc tcgagctgag gggaataacc aggcagattt
      481 ctgggttcat ataaaacaac aaaatacaat caaaatgcat caccaacata cacccaattg
      541 acatgctgga atcttagggt ggtcttgcag agacaaagac aagagaagag ctgttgggat
      601 tgatttcacc atctaacagc ttctggctgt ctcacaccag ggtttgagac ctaccgacag
      661 gactcgtagg gcatacacag gaaatttggc cttggcatca gtggtgctgg aagcctgtga
      721 tatgacagta ggcctctgaa gctattctgg tgtatcactc tgccccttct ccttctgtgt
      781 ttggagccaa catctggagg agcctcgagg cctgccaagc agccgaaggt cctggcttag
      841 ttctggcttc gtgttcttct ctgagaaaag tgtgttcttt ctgattctgc tctcctattg
      901 ctggcaccac gccggtggta gttgaaggtg ttggttctgc aagagtgaag tacctgatgg
      961 tgccacagat gcccttactt aacatcatcg tttgtaaatg aatcagtgat ctctcttgag
     1021 cctcggtggc cttctttttc agaacgttgc ctccaaagtg tatcctccct ttggcctgga
     1081 agttctgtgg ctatcccata ctactggggt ctctgctttc cagttggaag gggactactg
     1141 ggagagagga aggggctgct ggaagcgaag aagaaggaaa aaagagctga aggagggtgc
     1201 gcccctccca ctgccgcctc ccccatccct cccactcctc tggggacccc cattctccgt
     1261 gacgttgtcc aggaccactt cgaccctgtc gcccccagct cccccccgcc gcaccccagc
     1321 cccgagcatg gggacggcgc tggtccagca tgggggctgc tgtctcctct gcctgtcgct
     1381 gctgctgttg ggctgctggg cagagctggg cagtgggctg gagttcccag gcgctgaggg
     1441 ccagtggacg cgcttcccca agtggaacgc gtgctgcgag agtgagatga gcttccagct
     1501 gaagacacgc agcgcccgcg gcctcgtgct ctacttcgac gacgagggct tctgcgactt
     1561 cctcgagctc atcctgacac gcggcggccg cttgcagctc agcttctcca tcttctgcgc
     1621 cgagcccgcc acgctgttgg ccgacacgcc agtcaacgac ggcgcctggc acagcgtgcg
     1681 catccgccgc cagttccgca acaccactct ctacatcgac cgcgctgagg ccaagtgggt
     1741 ggaggtcaag tccaagcgca gggacatgac ggtgttcagt gggctgttcg tgggcggcct
     1801 gccgcctgaa ctgcgagccg ctgcgctcaa gctcaccctg gcctcggtgc gtgagcggga
     1861 gcccttcaag ggctggatcc gtgatgtcag ggtcaactcg tcccaggcgc tgccggtgga
     1921 cggcagcgag gtcaagctgg acgaagagcc gcccaatagc gggggcggga gcccgtgcga
     1981 ggcgggcgat gagggcgacg gcggcgtgtg cctcaacggg ggcgtgtgct ccgtggtcga
     2041 cgaccaggcc gtgtgtgact gctcgaggac cggtttccgt ggcaaagact gcagccaaga
     2101 agacaacaat gtagaaggtc tggcgcacct gatgatgggc gaccaaggaa aagaagagta
     2161 tattgccaca ttcaagggat ctgagtactt ctgctacgac ttatcccaaa accccattca
     2221 aagcagcagc gacgaaataa ctctgtcctt taaaactctt cagaggaatg gactgatgct
     2281 tcacacaggg aaatcggctg attatgtcaa ccttgccttg aaaaatggag ctgtctctct
     2341 ggtcattaat ttgggatcag gggcctttga agcgctagtg gagcccgtga atggaaagtt
     2401 taatgataat gcctggcatg atgtgaaagt caccaggaat ctgcgtcagc actcaggcat
     2461 tggacacgct atggtgacaa tatcagtgga tgggattctt accacaacgg gctacacgca
     2521 agaagattac accatgctgg ggtctgatga ctttttctat gttggaggca gccccagcac
     2581 agccgacctt ccagggtcac cagtcagtaa caactttatg ggctgtctca aagaggtcgt
     2641 atataaaaat aatgatgtaa gactggagtt atcgcgactt gccaagcaag gagatcctaa
     2701 gatgaagatc catggtgtgg tggcttttaa gtgtgaaaat gtggcaacct tagacccaat
     2761 cacttttgag accccagaat ctttcatttc tttgcctaag tggaatgcaa agaaaacagg
     2821 ctcaatatca tttgatttcc gtacaacgga gccaaatggc ctcatcttgt ttagccatgg
     2881 caagccaaga catcagaagg atgccaagca cccgcagatg attaaggttg acttttttgc
     2941 tattgaaatg ctggatggcc acttgtacct cctcttagac atgggatcag gtactataaa
     3001 aatcaaagcc cttcagaaga aagtcaatga tggagaatgg tatcacgtgg atttccagcg
     3061 agatggacgg tcaggtacca tttctgtcaa cacacttcgt actccctaca cagctcccgg
     3121 tgagagtgag atcctagacc tcgatgatga gttgtatctg ggtggcttgc cagaaaataa
     3181 ggctggcctg gtcttcccca ctgaggtgtg gactgctctg ctcaactatg gctacgtagg
     3241 ctgcatccgg gatctattca ttgatggcca gagcaaagat atccggcaga tggcggaaat
     3301 tcagagtact gctggagtga agccatcctg ctcaagggag actgcaaaac catgccttag
     3361 caatccttgc aaaaacaatg gcatgtgcag ggatggctgg aacagatacg tctgtgattg
     3421 ctctggaaca ggctatctcg gcaggtcctg tgagagagag gcaacggttt tgagctacga
     3481 tgggagtatg tttatgaaaa ttcagctccc tgtggtgatg cacactgagg ccgaggacgt
     3541 ttccttacgg ttcagatccc agcgtgcgta cggcattctg atggcgacca cttctagaga
     3601 ctccgcagat acccttcgac tggagctaga tgcagggcgc gtgaaactca cggtcaatct
     3661 agattgtatc aggattaact gtaattccag caaaggtcct gagacccttt ttgccggcta
     3721 taacctcaat gataatgaat ggcacacagt acgtgtggtt cggcgaggaa aaagtttaaa
     3781 gctaaccgtg gatgatcaac aagccatgac aggccaaatg gcaggtgatc atacaaggct
     3841 ggagtttcat aacatagaga caggcatcat cacagaacga cgctatcttt cttctgtccc
     3901 ctccaacttc attgggcacc tgcaaagcct cacatttaat ggaatggcat acattgactt
     3961 gtgcaaaaat ggtgatatag attattgtga actcaatgcc aggtttggat tcaggaacat
     4021 catcgcggat cctgtcacct tcaagaccaa atcaagctat gttgccttag ctacattgca
     4081 agcctacact tctatgcatc tatttttcca attcaagaca acatccctag atggactaat
     4141 tctgtataac agtggggatg gaaatgactt tattgtggtt gaattagtta aagggtactt
     4201 acattatgtg tttgacttgg gaaatggtgc taacctcatc aaagggagct caaacaaacc
     4261 actcaacgac aatcagtggc acaatgtgat gatttcaagg gacaccagca atctccacac
     4321 agtaaagatc gacacaaaaa tcacaacaca aatcactgcg ggagccagaa acttagacct
     4381 caagagtgac ttgtatattg gaggagtggc taaagaaaca tacaaatcgt tgccgaaact
     4441 ggtccatgct aaagaaggct ttcaaggttg cctggcatct gtggacttga atggcaggct
     4501 tccagacctc atatctgatg ctcttttctg caatgggcaa attgagagag gatgcgaagg
     4561 gcccagcaca acctgtcaag aggactcatg ttcaaatcaa ggcgtgtgct tgcagcaatg
     4621 ggatggcttt agctgtgact gtagcatgac ttccttcagt ggcccgctct gcaatgaccc
     4681 tgggacgacg tatatcttta gcaaaggtgg tggacaaatt acatataagt ggcctcctaa
     4741 tgaccgaccc agtacacgag cagacaggct ggccatcggg tttagcactg ttcagaagga
     4801 agcagtgttg gtgcgtgtgg acagttcctc aggcctgggt gactaccttg agctgcacat
     4861 acaccaagga aaaattggag ttaaatttaa tgttgggaca gatgacatcg ccattgagga
     4921 gtccaatgca atcattaatg atggaaaata ccatgtagtg cgtttcacga ggagtggtgg
     4981 caatgccacg ttacaggtgg acagctggcc agtcatcgaa cgataccctg caggaaacaa
     5041 tgataacgag cgcctggcga ttgctagaca gcgaattcca tatcgacttg gtcgagtagt
     5101 tgatgaatgg ctactcgaca aagggcgtca gctcacaatc ttcaatagcc aagcaaccat
     5161 aataattggc gggaaagagc agggccagcc cttccagggc cagctctctg ggctttacta
     5221 caatggcttg aaagttctga atatggcggc agagaacgat gccaacatcg ccatagtggg
     5281 aaatgtgagg ctggtcggtg aagtgccttc ctctatgaca actgagtcga cagccactgc
     5341 catgcagtcc gagatgtcca cctcaatcat ggagaccacc acaaccctgg ctaccagcac
     5401 agctcgacga ggaaagcccc ccacaaagga gcctatcagc cagaccacgg atgatatcct
     5461 tgtggcctcg gcagagtgtc ccagcgacga tgaggacatt gacccctgtg agccgagctc
     5521 agccaacccc acccgagtgg gcggccgcga accataccca ggctcggcag aggtgatccg
     5581 ggagtctagc agtaccactg gcatggtggt ggggattgtc gcagcagcag ctctgtgcat
     5641 cctcatcctc ctctatgcca tgtacaagta cagaaaccgg gatgaaggct catatcacgt
     5701 ggatgagagt cgaaactaca tcagtaactc agcacagtcc aatggggctg tggtcaagga
     5761 gaagcagccc agcagtgcga aaagcgccaa caaaaacaag aagaacaagg ataaggagta
     5821 ttatgtctga
//
